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tsoc
openmm
Commits
796b5603
Commit
796b5603
authored
Jun 11, 2009
by
Peter Eastman
Browse files
CUDA local force kernel applied periodic boundary conditions incorrectly.
parent
4bf75f3d
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platforms/cuda/src/kernels/kCalculateLocalForces.cu
platforms/cuda/src/kernels/kCalculateLocalForces.cu
+2
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platforms/cuda/src/kernels/kCalculateLocalForces.cu
View file @
796b5603
...
...
@@ -547,8 +547,8 @@ __global__ void kCalculateLocalForces_kernel()
d
.
y
=
a1
.
y
-
a2
.
y
;
d
.
z
=
a1
.
z
-
a2
.
z
;
d
.
x
-=
floor
(
d
.
x
/
cSim
.
periodicBoxSizeX
+
0.5
f
)
*
cSim
.
periodicBoxSizeX
;
d
.
y
-=
floor
(
d
.
x
/
cSim
.
periodicBoxSizeY
+
0.5
f
)
*
cSim
.
periodicBoxSizeY
;
d
.
z
-=
floor
(
d
.
x
/
cSim
.
periodicBoxSizeZ
+
0.5
f
)
*
cSim
.
periodicBoxSizeZ
;
d
.
y
-=
floor
(
d
.
y
/
cSim
.
periodicBoxSizeY
+
0.5
f
)
*
cSim
.
periodicBoxSizeY
;
d
.
z
-=
floor
(
d
.
z
/
cSim
.
periodicBoxSizeZ
+
0.5
f
)
*
cSim
.
periodicBoxSizeZ
;
float
r2
=
DOT3
(
d
,
d
);
float
inverseR
=
1.0
f
/
sqrt
(
r2
);
float
sig2
=
inverseR
*
LJ14
.
y
;
...
...
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