Implemented serialization for TabulatedFunctions

serialization/include/openmm/serialization/TabulatedFunctionProxies.h

+#ifndef OPENMM_TABULATEDFUNCTION_PROXIES_H_
+#define OPENMM_TABULATEDFUNCTION_PROXIES_H_
+
+/* -------------------------------------------------------------------------- *
+ *                                   OpenMM                                   *
+ * -------------------------------------------------------------------------- *
+ * This is part of the OpenMM molecular simulation toolkit originating from   *
+ * Simbios, the NIH National Center for Physics-Based Simulation of           *
+ * Biological Structures at Stanford, funded under the NIH Roadmap for        *
+ * Medical Research, grant U54 GM072970. See https://simtk.org.               *
+ *                                                                            *
+ * Portions copyright (c) 2014 Stanford University and the Authors.           *
+ * Authors: Peter Eastman                                                     *
+ * Contributors:                                                              *
+ *                                                                            *
+ * Permission is hereby granted, free of charge, to any person obtaining a    *
+ * copy of this software and associated documentation files (the "Software"), *
+ * to deal in the Software without restriction, including without limitation  *
+ * the rights to use, copy, modify, merge, publish, distribute, sublicense,   *
+ * and/or sell copies of the Software, and to permit persons to whom the      *
+ * Software is furnished to do so, subject to the following conditions:       *
+ *                                                                            *
+ * The above copyright notice and this permission notice shall be included in *
+ * all copies or substantial portions of the Software.                        *
+ *                                                                            *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
+ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,   *
+ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL    *
+ * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,    *
+ * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR      *
+ * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE  *
+ * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
+ * -------------------------------------------------------------------------- */
+
+#include "openmm/internal/windowsExport.h"
+#include "openmm/serialization/SerializationProxy.h"
+
+namespace OpenMM {
+
+/**
+ * This is a proxy for serializing Continuous1DFunction objects.
+ */
+    
+class OPENMM_EXPORT Continuous1DFunctionProxy : public SerializationProxy {
+public:
+    Continuous1DFunctionProxy();
+    void serialize(const void* object, SerializationNode& node) const;
+    void* deserialize(const SerializationNode& node) const;
+};
+
+/**
+ * This is a proxy for serializing Continuous2DFunction objects.
+ */
+    
+class OPENMM_EXPORT Continuous2DFunctionProxy : public SerializationProxy {
+public:
+    Continuous2DFunctionProxy();
+    void serialize(const void* object, SerializationNode& node) const;
+    void* deserialize(const SerializationNode& node) const;
+};
+
+/**
+ * This is a proxy for serializing Continuous3DFunction objects.
+ */
+    
+class OPENMM_EXPORT Continuous3DFunctionProxy : public SerializationProxy {
+public:
+    Continuous3DFunctionProxy();
+    void serialize(const void* object, SerializationNode& node) const;
+    void* deserialize(const SerializationNode& node) const;
+};
+
+/**
+ * This is a proxy for serializing Discrete1DFunction objects.
+ */
+    
+class OPENMM_EXPORT Discrete1DFunctionProxy : public SerializationProxy {
+public:
+    Discrete1DFunctionProxy();
+    void serialize(const void* object, SerializationNode& node) const;
+    void* deserialize(const SerializationNode& node) const;
+};
+
+/**
+ * This is a proxy for serializing Discrete2DFunction objects.
+ */
+    
+class OPENMM_EXPORT Discrete2DFunctionProxy : public SerializationProxy {
+public:
+    Discrete2DFunctionProxy();
+    void serialize(const void* object, SerializationNode& node) const;
+    void* deserialize(const SerializationNode& node) const;
+};
+
+/**
+ * This is a proxy for serializing Discrete3DFunction objects.
+ */
+    
+class OPENMM_EXPORT Discrete3DFunctionProxy : public SerializationProxy {
+public:
+    Discrete3DFunctionProxy();
+    void serialize(const void* object, SerializationNode& node) const;
+    void* deserialize(const SerializationNode& node) const;
+};
+
+} // namespace OpenMM
+
+#endif /*OPENMM_TABULATEDFUNCTION_PROXIES_H_*/

serialization/src/CustomCompoundBondForceProxy.cpp

@@ -73,6 +73,9 @@ void CustomCompoundBondForceProxy::serialize(const void* object, SerializationNo
             node.setDoubleProperty(key.str(), params[j]);
         }
     }
+    SerializationNode& functions = node.createChildNode("Functions");
+    for (int i = 0; i < force.getNumTabulatedFunctions(); i++)
+        functions.createChildNode("Function", &force.getTabulatedFunction(i)).setStringProperty("name", force.getTabulatedFunctionName(i));
 }
 
 void* CustomCompoundBondForceProxy::deserialize(const SerializationNode& node) const {
@@ -110,6 +113,22 @@ void* CustomCompoundBondForceProxy::deserialize(const SerializationNode& node) c
             }
             force->addBond(particles, params);
         }
+        const SerializationNode& functions = node.getChildNode("Functions");
+        for (int i = 0; i < (int) functions.getChildren().size(); i++) {
+            const SerializationNode& function = functions.getChildren()[i];
+            if (function.hasProperty("type")) {
+                force->addTabulatedFunction(function.getStringProperty("name"), function.decodeObject<TabulatedFunction>());
+            }
+            else {
+                // This is an old file created before TabulatedFunction existed.
+                
+                const SerializationNode& valuesNode = function.getChildNode("Values");
+                vector<double> values;
+                for (int j = 0; j < (int) valuesNode.getChildren().size(); j++)
+                    values.push_back(valuesNode.getChildren()[j].getDoubleProperty("v"));
+                force->addTabulatedFunction(function.getStringProperty("name"), new Continuous1DFunction(values, function.getDoubleProperty("min"), function.getDoubleProperty("max")));
+            }
+        }
         return force;
     }
     catch (...) {

serialization/src/CustomGBForceProxy.cpp

@@ -87,16 +87,8 @@ void CustomGBForceProxy::serialize(const void* object, SerializationNode& node)
         exclusions.createChildNode("Exclusion").setIntProperty("p1", particle1).setIntProperty("p2", particle2);
     }
     SerializationNode& functions = node.createChildNode("Functions");
-    for (int i = 0; i < force.getNumFunctions(); i++) {
-        string name;
-        vector<double> values;
-        double min, max;
-        force.getFunctionParameters(i, name, values, min, max);
-        SerializationNode& node = functions.createChildNode("Function").setStringProperty("name", name).setDoubleProperty("min", min).setDoubleProperty("max", max);
-        SerializationNode& valuesNode = node.createChildNode("Values");
-        for (int j = 0; j < (int) values.size(); j++)
-            valuesNode.createChildNode("Value").setDoubleProperty("v", values[j]);
-    }
+    for (int i = 0; i < force.getNumTabulatedFunctions(); i++)
+        functions.createChildNode("Function", &force.getTabulatedFunction(i)).setStringProperty("name", force.getTabulatedFunctionName(i));
 }
 
 void* CustomGBForceProxy::deserialize(const SerializationNode& node) const {
@@ -147,11 +139,18 @@ void* CustomGBForceProxy::deserialize(const SerializationNode& node) const {
         const SerializationNode& functions = node.getChildNode("Functions");
         for (int i = 0; i < (int) functions.getChildren().size(); i++) {
             const SerializationNode& function = functions.getChildren()[i];
-            const SerializationNode& valuesNode = function.getChildNode("Values");
-            vector<double> values;
-            for (int j = 0; j < (int) valuesNode.getChildren().size(); j++)
-                values.push_back(valuesNode.getChildren()[j].getDoubleProperty("v"));
-            force->addFunction(function.getStringProperty("name"), values, function.getDoubleProperty("min"), function.getDoubleProperty("max"));
+            if (function.hasProperty("type")) {
+                force->addTabulatedFunction(function.getStringProperty("name"), function.decodeObject<TabulatedFunction>());
+            }
+            else {
+                // This is an old file created before TabulatedFunction existed.
+                
+                const SerializationNode& valuesNode = function.getChildNode("Values");
+                vector<double> values;
+                for (int j = 0; j < (int) valuesNode.getChildren().size(); j++)
+                    values.push_back(valuesNode.getChildren()[j].getDoubleProperty("v"));
+                force->addTabulatedFunction(function.getStringProperty("name"), new Continuous1DFunction(values, function.getDoubleProperty("min"), function.getDoubleProperty("max")));
+            }
         }
         return force;
     }

serialization/src/CustomHbondForceProxy.cpp

@@ -92,16 +92,8 @@ void CustomHbondForceProxy::serialize(const void* object, SerializationNode& nod
         exclusions.createChildNode("Exclusion").setIntProperty("donor", donor).setIntProperty("acceptor", acceptor);
     }
     SerializationNode& functions = node.createChildNode("Functions");
-    for (int i = 0; i < force.getNumFunctions(); i++) {
-        string name;
-        vector<double> values;
-        double min, max;
-        force.getFunctionParameters(i, name, values, min, max);
-        SerializationNode& node = functions.createChildNode("Function").setStringProperty("name", name).setDoubleProperty("min", min).setDoubleProperty("max", max);
-        SerializationNode& valuesNode = node.createChildNode("Values");
-        for (int j = 0; j < (int) values.size(); j++)
-            valuesNode.createChildNode("Value").setDoubleProperty("v", values[j]);
-    }
+    for (int i = 0; i < force.getNumTabulatedFunctions(); i++)
+        functions.createChildNode("Function", &force.getTabulatedFunction(i)).setStringProperty("name", force.getTabulatedFunctionName(i));
 }
 
 void* CustomHbondForceProxy::deserialize(const SerializationNode& node) const {
@@ -159,11 +151,18 @@ void* CustomHbondForceProxy::deserialize(const SerializationNode& node) const {
         const SerializationNode& functions = node.getChildNode("Functions");
         for (int i = 0; i < (int) functions.getChildren().size(); i++) {
             const SerializationNode& function = functions.getChildren()[i];
-            const SerializationNode& valuesNode = function.getChildNode("Values");
-            vector<double> values;
-            for (int j = 0; j < (int) valuesNode.getChildren().size(); j++)
-                values.push_back(valuesNode.getChildren()[j].getDoubleProperty("v"));
-            force->addFunction(function.getStringProperty("name"), values, function.getDoubleProperty("min"), function.getDoubleProperty("max"));
+            if (function.hasProperty("type")) {
+                force->addTabulatedFunction(function.getStringProperty("name"), function.decodeObject<TabulatedFunction>());
+            }
+            else {
+                // This is an old file created before TabulatedFunction existed.
+                
+                const SerializationNode& valuesNode = function.getChildNode("Values");
+                vector<double> values;
+                for (int j = 0; j < (int) valuesNode.getChildren().size(); j++)
+                    values.push_back(valuesNode.getChildren()[j].getDoubleProperty("v"));
+                force->addTabulatedFunction(function.getStringProperty("name"), new Continuous1DFunction(values, function.getDoubleProperty("min"), function.getDoubleProperty("max")));
+            }
         }
         return force;
     }

serialization/src/CustomNonbondedForceProxy.cpp

@@ -74,16 +74,8 @@ void CustomNonbondedForceProxy::serialize(const void* object, SerializationNode&
         exclusions.createChildNode("Exclusion").setIntProperty("p1", particle1).setIntProperty("p2", particle2);
     }
     SerializationNode& functions = node.createChildNode("Functions");
-    for (int i = 0; i < force.getNumFunctions(); i++) {
-        string name;
-        vector<double> values;
-        double min, max;
-        force.getFunctionParameters(i, name, values, min, max);
-        SerializationNode& node = functions.createChildNode("Function").setStringProperty("name", name).setDoubleProperty("min", min).setDoubleProperty("max", max);
-        SerializationNode& valuesNode = node.createChildNode("Values");
-        for (int j = 0; j < (int) values.size(); j++)
-            valuesNode.createChildNode("Value").setDoubleProperty("v", values[j]);
-    }
+    for (int i = 0; i < force.getNumTabulatedFunctions(); i++)
+        functions.createChildNode("Function", &force.getTabulatedFunction(i)).setStringProperty("name", force.getTabulatedFunctionName(i));
 }
 
 void* CustomNonbondedForceProxy::deserialize(const SerializationNode& node) const {
@@ -124,11 +116,18 @@ void* CustomNonbondedForceProxy::deserialize(const SerializationNode& node) cons
         const SerializationNode& functions = node.getChildNode("Functions");
         for (int i = 0; i < (int) functions.getChildren().size(); i++) {
             const SerializationNode& function = functions.getChildren()[i];
-            const SerializationNode& valuesNode = function.getChildNode("Values");
-            vector<double> values;
-            for (int j = 0; j < (int) valuesNode.getChildren().size(); j++)
-                values.push_back(valuesNode.getChildren()[j].getDoubleProperty("v"));
-            force->addFunction(function.getStringProperty("name"), values, function.getDoubleProperty("min"), function.getDoubleProperty("max"));
+            if (function.hasProperty("type")) {
+                force->addTabulatedFunction(function.getStringProperty("name"), function.decodeObject<TabulatedFunction>());
+            }
+            else {
+                // This is an old file created before TabulatedFunction existed.
+                
+                const SerializationNode& valuesNode = function.getChildNode("Values");
+                vector<double> values;
+                for (int j = 0; j < (int) valuesNode.getChildren().size(); j++)
+                    values.push_back(valuesNode.getChildren()[j].getDoubleProperty("v"));
+                force->addTabulatedFunction(function.getStringProperty("name"), new Continuous1DFunction(values, function.getDoubleProperty("min"), function.getDoubleProperty("max")));
+            }
         }
         return force;
     }

serialization/src/SerializationProxyRegistration.cpp

@@ -30,6 +30,7 @@
  * -------------------------------------------------------------------------- */
 
 #include "openmm/AndersenThermostat.h"
+#include "openmm/BrownianIntegrator.h"
 #include "openmm/CMAPTorsionForce.h"
 #include "openmm/CMMotionRemover.h"
 #include "openmm/CustomAngleForce.h"
@@ -38,26 +39,26 @@
 #include "openmm/CustomExternalForce.h"
 #include "openmm/CustomGBForce.h"
 #include "openmm/CustomHbondForce.h"
+#include "openmm/CustomIntegrator.h"
 #include "openmm/CustomNonbondedForce.h"
 #include "openmm/CustomTorsionForce.h"
-#include "openmm/HarmonicAngleForce.h"
 #include "openmm/GBSAOBCForce.h"
 #include "openmm/GBVIForce.h"
+#include "openmm/HarmonicAngleForce.h"
 #include "openmm/HarmonicBondForce.h"
+#include "openmm/LangevinIntegrator.h"
 #include "openmm/MonteCarloBarostat.h"
 #include "openmm/NonbondedForce.h"
 #include "openmm/PeriodicTorsionForce.h"
 #include "openmm/RBTorsionForce.h"
 #include "openmm/System.h"
-
-#include "openmm/BrownianIntegrator.h"
-#include "openmm/CustomIntegrator.h"
-#include "openmm/LangevinIntegrator.h"
+#include "openmm/TabulatedFunction.h"
 #include "openmm/VariableLangevinIntegrator.h"
 #include "openmm/VariableVerletIntegrator.h"
 #include "openmm/VerletIntegrator.h"
 
 #include "openmm/serialization/SerializationProxy.h"
+#include "openmm/serialization/BrownianIntegratorProxy.h"
 #include "openmm/serialization/AndersenThermostatProxy.h"
 #include "openmm/serialization/CMAPTorsionForceProxy.h"
 #include "openmm/serialization/CMMotionRemoverProxy.h"
@@ -67,23 +68,21 @@
 #include "openmm/serialization/CustomExternalForceProxy.h"
 #include "openmm/serialization/CustomGBForceProxy.h"
 #include "openmm/serialization/CustomHbondForceProxy.h"
+#include "openmm/serialization/CustomIntegratorProxy.h"
 #include "openmm/serialization/CustomNonbondedForceProxy.h"
 #include "openmm/serialization/CustomTorsionForceProxy.h"
 #include "openmm/serialization/GBSAOBCForceProxy.h"
 #include "openmm/serialization/GBVIForceProxy.h"
 #include "openmm/serialization/HarmonicAngleForceProxy.h"
 #include "openmm/serialization/HarmonicBondForceProxy.h"
+#include "openmm/serialization/LangevinIntegratorProxy.h"
 #include "openmm/serialization/MonteCarloBarostatProxy.h"
 #include "openmm/serialization/NonbondedForceProxy.h"
 #include "openmm/serialization/PeriodicTorsionForceProxy.h"
 #include "openmm/serialization/RBTorsionForceProxy.h"
-#include "openmm/serialization/SystemProxy.h"
-
 #include "openmm/serialization/StateProxy.h"
-
-#include "openmm/serialization/BrownianIntegratorProxy.h"
-#include "openmm/serialization/CustomIntegratorProxy.h"
-#include "openmm/serialization/LangevinIntegratorProxy.h"
+#include "openmm/serialization/SystemProxy.h"
+#include "openmm/serialization/TabulatedFunctionProxies.h"
 #include "openmm/serialization/VariableLangevinIntegratorProxy.h"
 #include "openmm/serialization/VariableVerletIntegratorProxy.h"
 #include "openmm/serialization/VerletIntegratorProxy.h"
@@ -104,29 +103,35 @@ using namespace OpenMM;
 
 extern "C" void registerSerializationProxies() {
     SerializationProxy::registerProxy(typeid(AndersenThermostat), new AndersenThermostatProxy());
+    SerializationProxy::registerProxy(typeid(BrownianIntegrator), new BrownianIntegratorProxy());
     SerializationProxy::registerProxy(typeid(CMAPTorsionForce), new CMAPTorsionForceProxy());
     SerializationProxy::registerProxy(typeid(CMMotionRemover), new CMMotionRemoverProxy());
+    SerializationProxy::registerProxy(typeid(Continuous1DFunction), new Continuous1DFunctionProxy());
+    SerializationProxy::registerProxy(typeid(Continuous2DFunction), new Continuous2DFunctionProxy());
+    SerializationProxy::registerProxy(typeid(Continuous3DFunction), new Continuous3DFunctionProxy());
     SerializationProxy::registerProxy(typeid(CustomAngleForce), new CustomAngleForceProxy());
     SerializationProxy::registerProxy(typeid(CustomBondForce), new CustomBondForceProxy());
     SerializationProxy::registerProxy(typeid(CustomCompoundBondForce), new CustomCompoundBondForceProxy());
     SerializationProxy::registerProxy(typeid(CustomExternalForce), new CustomExternalForceProxy());
     SerializationProxy::registerProxy(typeid(CustomGBForce), new CustomGBForceProxy());
     SerializationProxy::registerProxy(typeid(CustomHbondForce), new CustomHbondForceProxy());
+    SerializationProxy::registerProxy(typeid(CustomIntegrator), new CustomIntegratorProxy());
     SerializationProxy::registerProxy(typeid(CustomNonbondedForce), new CustomNonbondedForceProxy());
     SerializationProxy::registerProxy(typeid(CustomTorsionForce), new CustomTorsionForceProxy());
+    SerializationProxy::registerProxy(typeid(Discrete1DFunction), new Discrete1DFunctionProxy());
+    SerializationProxy::registerProxy(typeid(Discrete2DFunction), new Discrete2DFunctionProxy());
+    SerializationProxy::registerProxy(typeid(Discrete3DFunction), new Discrete3DFunctionProxy());
     SerializationProxy::registerProxy(typeid(GBSAOBCForce), new GBSAOBCForceProxy());
     SerializationProxy::registerProxy(typeid(GBVIForce), new GBVIForceProxy());
     SerializationProxy::registerProxy(typeid(HarmonicAngleForce), new HarmonicAngleForceProxy());
     SerializationProxy::registerProxy(typeid(HarmonicBondForce), new HarmonicBondForceProxy());
+    SerializationProxy::registerProxy(typeid(LangevinIntegrator), new LangevinIntegratorProxy());
     SerializationProxy::registerProxy(typeid(MonteCarloBarostat), new MonteCarloBarostatProxy());
     SerializationProxy::registerProxy(typeid(NonbondedForce), new NonbondedForceProxy());
     SerializationProxy::registerProxy(typeid(PeriodicTorsionForce), new PeriodicTorsionForceProxy());
     SerializationProxy::registerProxy(typeid(RBTorsionForce), new RBTorsionForceProxy());
     SerializationProxy::registerProxy(typeid(System), new SystemProxy());
     SerializationProxy::registerProxy(typeid(State), new StateProxy());
-    SerializationProxy::registerProxy(typeid(BrownianIntegrator), new BrownianIntegratorProxy());
-    SerializationProxy::registerProxy(typeid(CustomIntegrator), new CustomIntegratorProxy());
-    SerializationProxy::registerProxy(typeid(LangevinIntegrator), new LangevinIntegratorProxy());
     SerializationProxy::registerProxy(typeid(VariableLangevinIntegrator), new VariableLangevinIntegratorProxy());
     SerializationProxy::registerProxy(typeid(VariableVerletIntegrator), new VariableVerletIntegratorProxy());
     SerializationProxy::registerProxy(typeid(VerletIntegrator), new VerletIntegratorProxy());

serialization/src/TabulatedFunctionProxies.cpp

+/* -------------------------------------------------------------------------- *
+ *                                   OpenMM                                   *
+ * -------------------------------------------------------------------------- *
+ * This is part of the OpenMM molecular simulation toolkit originating from   *
+ * Simbios, the NIH National Center for Physics-Based Simulation of           *
+ * Biological Structures at Stanford, funded under the NIH Roadmap for        *
+ * Medical Research, grant U54 GM072970. See https://simtk.org.               *
+ *                                                                            *
+ * Portions copyright (c) 2014 Stanford University and the Authors.           *
+ * Authors: Peter Eastman                                                     *
+ * Contributors:                                                              *
+ *                                                                            *
+ * Permission is hereby granted, free of charge, to any person obtaining a    *
+ * copy of this software and associated documentation files (the "Software"), *
+ * to deal in the Software without restriction, including without limitation  *
+ * the rights to use, copy, modify, merge, publish, distribute, sublicense,   *
+ * and/or sell copies of the Software, and to permit persons to whom the      *
+ * Software is furnished to do so, subject to the following conditions:       *
+ *                                                                            *
+ * The above copyright notice and this permission notice shall be included in *
+ * all copies or substantial portions of the Software.                        *
+ *                                                                            *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
+ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,   *
+ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL    *
+ * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,    *
+ * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR      *
+ * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE  *
+ * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
+ * -------------------------------------------------------------------------- */
+
+#include "openmm/serialization/TabulatedFunctionProxies.h"
+#include "openmm/serialization/SerializationNode.h"
+#include "openmm/TabulatedFunction.h"
+#include <sstream>
+
+using namespace OpenMM;
+using namespace std;
+
+Continuous1DFunctionProxy::Continuous1DFunctionProxy() : SerializationProxy("Continuous1DFunction") {
+}
+
+void Continuous1DFunctionProxy::serialize(const void* object, SerializationNode& node) const {
+    node.setIntProperty("version", 1);
+    const Continuous1DFunction& function = *reinterpret_cast<const Continuous1DFunction*>(object);
+    double min, max;
+    vector<double> values;
+    function.getFunctionParameters(values, min, max);
+    node.setDoubleProperty("min", min);
+    node.setDoubleProperty("max", max);
+    SerializationNode& valuesNode = node.createChildNode("Values");
+    for (int j = 0; j < (int) values.size(); j++)
+        valuesNode.createChildNode("Value").setDoubleProperty("v", values[j]);
+}
+
+void* Continuous1DFunctionProxy::deserialize(const SerializationNode& node) const {
+    if (node.getIntProperty("version") != 1)
+        throw OpenMMException("Unsupported version number");
+    const SerializationNode& valuesNode = node.getChildNode("Values");
+    vector<double> values;
+    for (int j = 0; j < (int) valuesNode.getChildren().size(); j++)
+        values.push_back(valuesNode.getChildren()[j].getDoubleProperty("v"));
+    return new Continuous1DFunction(values, node.getDoubleProperty("min"), node.getDoubleProperty("max"));
+}
+
+Continuous2DFunctionProxy::Continuous2DFunctionProxy() : SerializationProxy("Continuous2DFunction") {
+}
+
+void Continuous2DFunctionProxy::serialize(const void* object, SerializationNode& node) const {
+    node.setIntProperty("version", 1);
+    const Continuous2DFunction& function = *reinterpret_cast<const Continuous2DFunction*>(object);
+    int xsize, ysize;
+    double xmin, xmax, ymin, ymax;
+    vector<double> values;
+    function.getFunctionParameters(xsize, ysize, values, xmin, xmax, ymin, ymax);
+    node.setDoubleProperty("xsize", xsize);
+    node.setDoubleProperty("ysize", ysize);
+    node.setDoubleProperty("xmin", xmin);
+    node.setDoubleProperty("xmax", xmax);
+    node.setDoubleProperty("ymin", ymin);
+    node.setDoubleProperty("ymax", ymax);
+    SerializationNode& valuesNode = node.createChildNode("Values");
+    for (int j = 0; j < (int) values.size(); j++)
+        valuesNode.createChildNode("Value").setDoubleProperty("v", values[j]);
+}
+
+void* Continuous2DFunctionProxy::deserialize(const SerializationNode& node) const {
+    if (node.getIntProperty("version") != 1)
+        throw OpenMMException("Unsupported version number");
+    const SerializationNode& valuesNode = node.getChildNode("Values");
+    vector<double> values;
+    for (int j = 0; j < (int) valuesNode.getChildren().size(); j++)
+        values.push_back(valuesNode.getChildren()[j].getDoubleProperty("v"));
+    return new Continuous2DFunction(node.getIntProperty("xsize"), node.getIntProperty("ysize"), values,
+            node.getDoubleProperty("xmin"), node.getDoubleProperty("xmax"), node.getDoubleProperty("ymin"), node.getDoubleProperty("ymax"));
+}
+
+Continuous3DFunctionProxy::Continuous3DFunctionProxy() : SerializationProxy("Continuous3DFunction") {
+}
+
+void Continuous3DFunctionProxy::serialize(const void* object, SerializationNode& node) const {
+    node.setIntProperty("version", 1);
+    const Continuous3DFunction& function = *reinterpret_cast<const Continuous3DFunction*>(object);
+    int xsize, ysize, zsize;
+    double xmin, xmax, ymin, ymax, zmin, zmax;
+    vector<double> values;
+    function.getFunctionParameters(xsize, ysize, zsize, values, xmin, xmax, ymin, ymax, zmin, zmax);
+    node.setDoubleProperty("xsize", xsize);
+    node.setDoubleProperty("ysize", ysize);
+    node.setDoubleProperty("zsize", zsize);
+    node.setDoubleProperty("xmin", xmin);
+    node.setDoubleProperty("xmax", xmax);
+    node.setDoubleProperty("ymin", ymin);
+    node.setDoubleProperty("ymax", ymax);
+    node.setDoubleProperty("zmin", zmin);
+    node.setDoubleProperty("zmax", zmax);
+    SerializationNode& valuesNode = node.createChildNode("Values");
+    for (int j = 0; j < (int) values.size(); j++)
+        valuesNode.createChildNode("Value").setDoubleProperty("v", values[j]);
+}
+
+void* Continuous3DFunctionProxy::deserialize(const SerializationNode& node) const {
+    if (node.getIntProperty("version") != 1)
+        throw OpenMMException("Unsupported version number");
+    const SerializationNode& valuesNode = node.getChildNode("Values");
+    vector<double> values;
+    for (int j = 0; j < (int) valuesNode.getChildren().size(); j++)
+        values.push_back(valuesNode.getChildren()[j].getDoubleProperty("v"));
+    return new Continuous3DFunction(node.getIntProperty("xsize"), node.getIntProperty("ysize"), node.getIntProperty("zsize"), values,
+            node.getDoubleProperty("xmin"), node.getDoubleProperty("xmax"), node.getDoubleProperty("ymin"), node.getDoubleProperty("ymax"),
+            node.getDoubleProperty("zmin"), node.getDoubleProperty("zmax"));
+}
+
+Discrete1DFunctionProxy::Discrete1DFunctionProxy() : SerializationProxy("Discrete1DFunction") {
+}
+
+void Discrete1DFunctionProxy::serialize(const void* object, SerializationNode& node) const {
+    node.setIntProperty("version", 1);
+    const Discrete1DFunction& function = *reinterpret_cast<const Discrete1DFunction*>(object);
+    vector<double> values;
+    function.getFunctionParameters(values);
+    SerializationNode& valuesNode = node.createChildNode("Values");
+    for (int j = 0; j < (int) values.size(); j++)
+        valuesNode.createChildNode("Value").setDoubleProperty("v", values[j]);
+}
+
+void* Discrete1DFunctionProxy::deserialize(const SerializationNode& node) const {
+    if (node.getIntProperty("version") != 1)
+        throw OpenMMException("Unsupported version number");
+    const SerializationNode& valuesNode = node.getChildNode("Values");
+    vector<double> values;
+    for (int j = 0; j < (int) valuesNode.getChildren().size(); j++)
+        values.push_back(valuesNode.getChildren()[j].getDoubleProperty("v"));
+    return new Discrete1DFunction(values);
+}
+
+Discrete2DFunctionProxy::Discrete2DFunctionProxy() : SerializationProxy("Discrete2DFunction") {
+}
+
+void Discrete2DFunctionProxy::serialize(const void* object, SerializationNode& node) const {
+    node.setIntProperty("version", 1);
+    const Discrete2DFunction& function = *reinterpret_cast<const Discrete2DFunction*>(object);
+    int xsize, ysize;
+    vector<double> values;
+    function.getFunctionParameters(xsize, ysize, values);
+    node.setDoubleProperty("xsize", xsize);
+    node.setDoubleProperty("ysize", ysize);
+    SerializationNode& valuesNode = node.createChildNode("Values");
+    for (int j = 0; j < (int) values.size(); j++)
+        valuesNode.createChildNode("Value").setDoubleProperty("v", values[j]);
+}
+
+void* Discrete2DFunctionProxy::deserialize(const SerializationNode& node) const {
+    if (node.getIntProperty("version") != 1)
+        throw OpenMMException("Unsupported version number");
+    const SerializationNode& valuesNode = node.getChildNode("Values");
+    vector<double> values;
+    for (int j = 0; j < (int) valuesNode.getChildren().size(); j++)
+        values.push_back(valuesNode.getChildren()[j].getDoubleProperty("v"));
+    return new Discrete2DFunction(node.getIntProperty("xsize"), node.getIntProperty("ysize"), values);
+}
+
+Discrete3DFunctionProxy::Discrete3DFunctionProxy() : SerializationProxy("Discrete3DFunction") {
+}
+
+void Discrete3DFunctionProxy::serialize(const void* object, SerializationNode& node) const {
+    node.setIntProperty("version", 1);
+    const Discrete3DFunction& function = *reinterpret_cast<const Discrete3DFunction*>(object);
+    int xsize, ysize, zsize;
+    vector<double> values;
+    function.getFunctionParameters(xsize, ysize, zsize, values);
+    node.setDoubleProperty("xsize", xsize);
+    node.setDoubleProperty("ysize", ysize);
+    node.setDoubleProperty("zsize", zsize);
+    SerializationNode& valuesNode = node.createChildNode("Values");
+    for (int j = 0; j < (int) values.size(); j++)
+        valuesNode.createChildNode("Value").setDoubleProperty("v", values[j]);
+}
+
+void* Discrete3DFunctionProxy::deserialize(const SerializationNode& node) const {
+    if (node.getIntProperty("version") != 1)
+        throw OpenMMException("Unsupported version number");
+    const SerializationNode& valuesNode = node.getChildNode("Values");
+    vector<double> values;
+    for (int j = 0; j < (int) valuesNode.getChildren().size(); j++)
+        values.push_back(valuesNode.getChildren()[j].getDoubleProperty("v"));
+    return new Discrete3DFunction(node.getIntProperty("xsize"), node.getIntProperty("ysize"), node.getIntProperty("zsize"), values);
+}

serialization/tests/TestSerializeCustomCompoundBondForce.cpp

@@ -62,6 +62,10 @@ void testSerialization() {
     particles[2] = 1;
     params[0] = 2.1;
     force.addBond(particles, params);
+    vector<double> values(10);
+    for (int i = 0; i < 10; i++)
+        values[i] = sin((double) i);
+    force.addTabulatedFunction("f", new Continuous1DFunction(values, 0.5, 1.5));
 
     // Serialize and then deserialize it.
 
@@ -95,6 +99,19 @@ void testSerialization() {
         for (int j = 0; j < (int) particles1.size(); j++)
             ASSERT_EQUAL(particles1[j], particles2[j]);
     }
+    ASSERT_EQUAL(force.getNumTabulatedFunctions(), force2.getNumTabulatedFunctions());
+    for (int i = 0; i < force.getNumTabulatedFunctions(); i++) {
+        double min1, min2, max1, max2;
+        vector<double> val1, val2;
+        dynamic_cast<Continuous1DFunction&>(force.getTabulatedFunction(i)).getFunctionParameters(val1, min1, max1);
+        dynamic_cast<Continuous1DFunction&>(force2.getTabulatedFunction(i)).getFunctionParameters(val2, min2, max2);
+        ASSERT_EQUAL(force.getTabulatedFunctionName(i), force2.getTabulatedFunctionName(i));
+        ASSERT_EQUAL(min1, min2);
+        ASSERT_EQUAL(max1, max2);
+        ASSERT_EQUAL(val1.size(), val2.size());
+        for (int j = 0; j < (int) val1.size(); j++)
+            ASSERT_EQUAL(val1[j], val2[j]);
+    }
 }
 
 int main() {

serialization/tests/TestSerializeCustomGBForce.cpp

@@ -63,7 +63,7 @@ void testSerialization() {
     vector<double> values(10);
     for (int i = 0; i < 10; i++)
         values[i] = sin((double) i);
-    force.addFunction("f", values, 0.5, 1.5);
+    force.addTabulatedFunction("f", new Discrete1DFunction(values));
 
     // Serialize and then deserialize it.
 
@@ -120,16 +120,12 @@ void testSerialization() {
         ASSERT_EQUAL(a1, a2);
         ASSERT_EQUAL(b1, b2);
     }
-    ASSERT_EQUAL(force.getNumFunctions(), force2.getNumFunctions());
-    for (int i = 0; i < force.getNumFunctions(); i++) {
-        string name1, name2;
-        double min1, min2, max1, max2;
+    ASSERT_EQUAL(force.getNumTabulatedFunctions(), force2.getNumTabulatedFunctions());
+    for (int i = 0; i < force.getNumTabulatedFunctions(); i++) {
         vector<double> val1, val2;
-        force.getFunctionParameters(i, name1, val1, min1, max1);
-        force2.getFunctionParameters(i, name2, val2, min2, max2);
-        ASSERT_EQUAL(name1, name2);
-        ASSERT_EQUAL(min1, min2);
-        ASSERT_EQUAL(max1, max2);
+        dynamic_cast<Discrete1DFunction&>(force.getTabulatedFunction(i)).getFunctionParameters(val1);
+        dynamic_cast<Discrete1DFunction&>(force2.getTabulatedFunction(i)).getFunctionParameters(val2);
+        ASSERT_EQUAL(force.getTabulatedFunctionName(i), force2.getTabulatedFunctionName(i));
         ASSERT_EQUAL(val1.size(), val2.size());
         for (int j = 0; j < (int) val1.size(); j++)
             ASSERT_EQUAL(val1[j], val2[j]);

serialization/tests/TestSerializeCustomHbondForce.cpp

@@ -66,7 +66,7 @@ void testSerialization() {
     vector<double> values(10);
     for (int i = 0; i < 10; i++)
         values[i] = sin((double) i);
-    force.addFunction("f", values, 0.5, 1.5);
+    force.addTabulatedFunction("f", new Discrete1DFunction(values));
 
     // Serialize and then deserialize it.
 
@@ -125,16 +125,12 @@ void testSerialization() {
         ASSERT_EQUAL(a1, a2);
         ASSERT_EQUAL(b1, b2);
     }
-    ASSERT_EQUAL(force.getNumFunctions(), force2.getNumFunctions());
-    for (int i = 0; i < force.getNumFunctions(); i++) {
-        string name1, name2;
-        double min1, min2, max1, max2;
+    ASSERT_EQUAL(force.getNumTabulatedFunctions(), force2.getNumTabulatedFunctions());
+    for (int i = 0; i < force.getNumTabulatedFunctions(); i++) {
         vector<double> val1, val2;
-        force.getFunctionParameters(i, name1, val1, min1, max1);
-        force2.getFunctionParameters(i, name2, val2, min2, max2);
-        ASSERT_EQUAL(name1, name2);
-        ASSERT_EQUAL(min1, min2);
-        ASSERT_EQUAL(max1, max2);
+        dynamic_cast<Discrete1DFunction&>(force.getTabulatedFunction(i)).getFunctionParameters(val1);
+        dynamic_cast<Discrete1DFunction&>(force2.getTabulatedFunction(i)).getFunctionParameters(val2);
+        ASSERT_EQUAL(force.getTabulatedFunctionName(i), force2.getTabulatedFunctionName(i));
         ASSERT_EQUAL(val1.size(), val2.size());
         for (int j = 0; j < (int) val1.size(); j++)
             ASSERT_EQUAL(val1[j], val2[j]);

serialization/tests/TestSerializeCustomNonbondedForce.cpp

@@ -98,14 +98,13 @@ void testSerialization() {
         ASSERT_EQUAL(a1, a2);
         ASSERT_EQUAL(b1, b2);
     }
-    ASSERT_EQUAL(force.getNumFunctions(), force2.getNumFunctions());
-    for (int i = 0; i < force.getNumFunctions(); i++) {
-        string name1, name2;
+    ASSERT_EQUAL(force.getNumTabulatedFunctions(), force2.getNumTabulatedFunctions());
+    for (int i = 0; i < force.getNumTabulatedFunctions(); i++) {
         double min1, min2, max1, max2;
         vector<double> val1, val2;
-        force.getFunctionParameters(i, name1, val1, min1, max1);
-        force2.getFunctionParameters(i, name2, val2, min2, max2);
-        ASSERT_EQUAL(name1, name2);
+        dynamic_cast<Continuous1DFunction&>(force.getTabulatedFunction(i)).getFunctionParameters(val1, min1, max1);
+        dynamic_cast<Continuous1DFunction&>(force2.getTabulatedFunction(i)).getFunctionParameters(val2, min2, max2);
+        ASSERT_EQUAL(force.getTabulatedFunctionName(i), force2.getTabulatedFunctionName(i));
         ASSERT_EQUAL(min1, min2);
         ASSERT_EQUAL(max1, max2);
         ASSERT_EQUAL(val1.size(), val2.size());

serialization/tests/TestSerializeTabulatedFunctions.cpp

+/* -------------------------------------------------------------------------- *
+ *                                   OpenMM                                   *
+ * -------------------------------------------------------------------------- *
+ * This is part of the OpenMM molecular simulation toolkit originating from   *
+ * Simbios, the NIH National Center for Physics-Based Simulation of           *
+ * Biological Structures at Stanford, funded under the NIH Roadmap for        *
+ * Medical Research, grant U54 GM072970. See https://simtk.org.               *
+ *                                                                            *
+ * Portions copyright (c) 2010-2014 Stanford University and the Authors.      *
+ * Authors: Peter Eastman                                                     *
+ * Contributors:                                                              *
+ *                                                                            *
+ * Permission is hereby granted, free of charge, to any person obtaining a    *
+ * copy of this software and associated documentation files (the "Software"), *
+ * to deal in the Software without restriction, including without limitation  *
+ * the rights to use, copy, modify, merge, publish, distribute, sublicense,   *
+ * and/or sell copies of the Software, and to permit persons to whom the      *
+ * Software is furnished to do so, subject to the following conditions:       *
+ *                                                                            *
+ * The above copyright notice and this permission notice shall be included in *
+ * all copies or substantial portions of the Software.                        *
+ *                                                                            *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
+ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,   *
+ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL    *
+ * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,    *
+ * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR      *
+ * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE  *
+ * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
+ * -------------------------------------------------------------------------- */
+
+#include "openmm/TabulatedFunction.h"
+#include "openmm/internal/AssertionUtilities.h"
+#include "openmm/serialization/XmlSerializer.h"
+#include <iostream>
+#include <sstream>
+
+using namespace OpenMM;
+using namespace std;
+
+void testContinuous1DFunction() {
+    // Create a function.
+
+    double min = 0.5, max = 1.5;
+    vector<double> values(60);
+    for (int i = 0; i < (int) values.size(); i++)
+        values[i] = sin((double) i);
+    Continuous1DFunction function(values, min, max);
+
+    // Serialize and then deserialize it.
+
+    stringstream buffer;
+    XmlSerializer::serialize<Continuous1DFunction>(&function, "Function", buffer);
+    Continuous1DFunction* copy = XmlSerializer::deserialize<Continuous1DFunction>(buffer);
+
+    // Compare the two forces to see if they are identical.
+
+    double min2, max2;
+    vector<double> values2;
+    copy->getFunctionParameters(values2, min2, max2);
+    ASSERT_EQUAL(min, min2);
+    ASSERT_EQUAL(max, max2);
+    ASSERT_EQUAL(values.size(), values2.size());
+    for (int j = 0; j < (int) values.size(); j++)
+        ASSERT_EQUAL(values[j], values2[j]);
+}
+
+void testContinuous2DFunction() {
+    // Create a function.
+
+    int xsize = 5, ysize = 12;
+    double xmin = 0.5, xmax = 1.5, ymin = 0.1, ymax = 5.0;
+    vector<double> values(xsize*ysize);
+    for (int i = 0; i < (int) values.size(); i++)
+        values[i] = sin((double) i);
+    Continuous2DFunction function(xsize, ysize, values, xmin, xmax, ymin, ymax);
+
+    // Serialize and then deserialize it.
+
+    stringstream buffer;
+    XmlSerializer::serialize<Continuous2DFunction>(&function, "Function", buffer);
+    Continuous2DFunction* copy = XmlSerializer::deserialize<Continuous2DFunction>(buffer);
+
+    // Compare the two forces to see if they are identical.
+
+    int xsize2, ysize2;
+    double xmin2, xmax2, ymin2, ymax2;
+    vector<double> values2;
+    copy->getFunctionParameters(xsize2, ysize2, values2, xmin2, xmax2, ymin2, ymax2);
+    ASSERT_EQUAL(xsize, xsize2);
+    ASSERT_EQUAL(ysize, ysize2);
+    ASSERT_EQUAL(xmin, xmin2);
+    ASSERT_EQUAL(xmax, xmax2);
+    ASSERT_EQUAL(ymin, ymin2);
+    ASSERT_EQUAL(ymax, ymax2);
+    ASSERT_EQUAL(values.size(), values2.size());
+    for (int j = 0; j < (int) values.size(); j++)
+        ASSERT_EQUAL(values[j], values2[j]);
+}
+
+void testContinuous3DFunction() {
+    // Create a function.
+
+    int xsize = 5, ysize = 4, zsize = 3;
+    double xmin = 0.5, xmax = 1.5, ymin = 0.1, ymax = 5.0, zmin = 0.3, zmax = 0.9;
+    vector<double> values(xsize*ysize*zsize);
+    for (int i = 0; i < (int) values.size(); i++)
+        values[i] = sin((double) i);
+    Continuous3DFunction function(xsize, ysize, zsize, values, xmin, xmax, ymin, ymax, zmin, zmax);
+
+    // Serialize and then deserialize it.
+
+    stringstream buffer;
+    XmlSerializer::serialize<Continuous3DFunction>(&function, "Function", buffer);
+    Continuous3DFunction* copy = XmlSerializer::deserialize<Continuous3DFunction>(buffer);
+
+    // Compare the two forces to see if they are identical.
+
+    int xsize2, ysize2, zsize2;
+    double xmin2, xmax2, ymin2, ymax2, zmin2, zmax2;
+    vector<double> values2;
+    copy->getFunctionParameters(xsize2, ysize2, zsize2, values2, xmin2, xmax2, ymin2, ymax2, zmin2, zmax2);
+    ASSERT_EQUAL(xsize, xsize2);
+    ASSERT_EQUAL(ysize, ysize2);
+    ASSERT_EQUAL(zsize, zsize2);
+    ASSERT_EQUAL(xmin, xmin2);
+    ASSERT_EQUAL(xmax, xmax2);
+    ASSERT_EQUAL(ymin, ymin2);
+    ASSERT_EQUAL(ymax, ymax2);
+    ASSERT_EQUAL(zmin, zmin2);
+    ASSERT_EQUAL(zmax, zmax2);
+    ASSERT_EQUAL(values.size(), values2.size());
+    for (int j = 0; j < (int) values.size(); j++)
+        ASSERT_EQUAL(values[j], values2[j]);
+}
+
+void testDiscrete1DFunction() {
+    // Create a function.
+
+    vector<double> values(60);
+    for (int i = 0; i < (int) values.size(); i++)
+        values[i] = sin((double) i);
+    Discrete1DFunction function(values);
+
+    // Serialize and then deserialize it.
+
+    stringstream buffer;
+    XmlSerializer::serialize<Discrete1DFunction>(&function, "Function", buffer);
+    Discrete1DFunction* copy = XmlSerializer::deserialize<Discrete1DFunction>(buffer);
+
+    // Compare the two forces to see if they are identical.
+
+    vector<double> values2;
+    copy->getFunctionParameters(values2);
+    ASSERT_EQUAL(values.size(), values2.size());
+    for (int j = 0; j < (int) values.size(); j++)
+        ASSERT_EQUAL(values[j], values2[j]);
+}
+
+void testDiscrete2DFunction() {
+    // Create a function.
+
+    int xsize = 5, ysize = 12;
+    vector<double> values(xsize*ysize);
+    for (int i = 0; i < (int) values.size(); i++)
+        values[i] = sin((double) i);
+    Discrete2DFunction function(xsize, ysize, values);
+
+    // Serialize and then deserialize it.
+
+    stringstream buffer;
+    XmlSerializer::serialize<Discrete2DFunction>(&function, "Function", buffer);
+    Discrete2DFunction* copy = XmlSerializer::deserialize<Discrete2DFunction>(buffer);
+
+    // Compare the two forces to see if they are identical.
+
+    int xsize2, ysize2;
+    vector<double> values2;
+    copy->getFunctionParameters(xsize2, ysize2, values2);
+    ASSERT_EQUAL(xsize, xsize2);
+    ASSERT_EQUAL(ysize, ysize2);
+    ASSERT_EQUAL(values.size(), values2.size());
+    for (int j = 0; j < (int) values.size(); j++)
+        ASSERT_EQUAL(values[j], values2[j]);
+}
+
+void testDiscrete3DFunction() {
+    // Create a function.
+
+    int xsize = 5, ysize = 4, zsize = 3;
+    vector<double> values(xsize*ysize*zsize);
+    for (int i = 0; i < (int) values.size(); i++)
+        values[i] = sin((double) i);
+    Discrete3DFunction function(xsize, ysize, zsize, values);
+
+    // Serialize and then deserialize it.
+
+    stringstream buffer;
+    XmlSerializer::serialize<Discrete3DFunction>(&function, "Function", buffer);
+    Discrete3DFunction* copy = XmlSerializer::deserialize<Discrete3DFunction>(buffer);
+
+    // Compare the two forces to see if they are identical.
+
+    int xsize2, ysize2, zsize2;
+    vector<double> values2;
+    copy->getFunctionParameters(xsize2, ysize2, zsize2, values2);
+    ASSERT_EQUAL(xsize, xsize2);
+    ASSERT_EQUAL(ysize, ysize2);
+    ASSERT_EQUAL(zsize, zsize2);
+    ASSERT_EQUAL(values.size(), values2.size());
+    for (int j = 0; j < (int) values.size(); j++)
+        ASSERT_EQUAL(values[j], values2[j]);
+}
+
+int main() {
+    try {
+        testContinuous1DFunction();
+        testContinuous2DFunction();
+        testContinuous3DFunction();
+        testDiscrete1DFunction();
+        testDiscrete2DFunction();
+        testDiscrete3DFunction();
+    }
+    catch(const exception& e) {
+        cout << "exception: " << e.what() << endl;
+        return 1;
+    }
+    cout << "Done" << endl;
+    return 0;
+}