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tsoc
openmm
Commits
66bcd1e0
Commit
66bcd1e0
authored
Apr 21, 2014
by
Jason Swails
Browse files
Fix the mbondi radii specification (for the HCT GB model in CHARMM files).
parent
8dfd8921
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wrappers/python/simtk/openmm/app/charmmpsffile.py
wrappers/python/simtk/openmm/app/charmmpsffile.py
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wrappers/python/simtk/openmm/app/charmmpsffile.py
View file @
66bcd1e0
...
@@ -1596,7 +1596,7 @@ def _mbondi_radii(atom_list):
...
@@ -1596,7 +1596,7 @@ def _mbondi_radii(atom_list):
else
:
else
:
radii
[
i
]
=
1.2
radii
[
i
]
=
1.2
# Radius of C atom depends on what type it is
# Radius of C atom depends on what type it is
elif
atom
.
atomic_number
==
6
:
elif
atom
.
type
.
atomic_number
==
6
:
radii
[
i
]
=
1.7
radii
[
i
]
=
1.7
# All other elements have fixed radii for all types/partners
# All other elements have fixed radii for all types/partners
elif
atom
.
type
.
atomic_number
==
7
:
elif
atom
.
type
.
atomic_number
==
7
:
...
...
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