Merge pull request #857 from peastman/doxygen

Fixed an error in doxygen comments

openmmapi/include/openmm/CustomAngleForce.h

@@ -194,7 +194,7 @@ public:
     /**
      * Update the per-angle parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setAngleParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setAngleParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * This method has several limitations.  The only information it updates is the values of per-angle parameters.

openmmapi/include/openmm/CustomBondForce.h

@@ -191,7 +191,7 @@ public:
     /**
      * Update the per-bond parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setBondParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setBondParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * This method has several limitations.  The only information it updates is the values of per-bond parameters.

openmmapi/include/openmm/CustomCompoundBondForce.h

@@ -289,7 +289,7 @@ public:
     /**
      * Update the per-bond parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setBondParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setBondParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * This method has several limitations.  The only information it updates is the values of per-bond parameters.

openmmapi/include/openmm/CustomExternalForce.h

@@ -191,7 +191,7 @@ public:
     /**
      * Update the per-particle parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setParticleParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setParticleParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * This method has several limitations.  The only information it updates is the values of per-particle parameters.

openmmapi/include/openmm/CustomGBForce.h

@@ -515,7 +515,7 @@ public:
     /**
      * Update the per-particle parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setParticleParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setParticleParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * This method has several limitations.  The only information it updates is the values of per-particle parameters.

openmmapi/include/openmm/CustomHbondForce.h

@@ -435,7 +435,7 @@ public:
      * Update the per-donor and per-acceptor parameters in a Context to match those stored in this Force object.  This method
      * provides an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
      * Simply call setDonorParameters() and setAcceptorParameters() to modify this object's parameters, then call
-     * updateParametersInState() to copy them over to the Context.
+     * updateParametersInContext() to copy them over to the Context.
      * 
      * This method has several limitations.  The only information it updates is the values of per-donor and per-acceptor parameters.
      * All other aspects of the Force (the energy function, nonbonded method, cutoff distance, etc.) are unaffected and can only

openmmapi/include/openmm/CustomTorsionForce.h

@@ -197,7 +197,7 @@ public:
     /**
      * Update the per-torsion parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setTorsionParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setTorsionParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * This method has several limitations.  The only information it updates is the values of per-torsion parameters.

openmmapi/include/openmm/GBSAOBCForce.h

@@ -176,7 +176,7 @@ public:
      * Update the particle parameters in a Context to match those stored in this Force object.  This method
      * provides an efficient method to update certain parameters in an existing Context without needing to
      * reinitialize it.  Simply call setParticleParameters() to modify this object's parameters, then call
-     * updateParametersInState() to copy them over to the Context.
+     * updateParametersInContext() to copy them over to the Context.
      * 
      * The only information this method updates is the values of per-particle parameters.  All other aspects
      * of the Force (the nonbonded method, the cutoff distance, etc.) are unaffected and can only be changed

openmmapi/include/openmm/HarmonicAngleForce.h

@@ -95,7 +95,7 @@ public:
     /**
      * Update the per-angle parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setAngleParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setAngleParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * The only information this method updates is the values of per-angle parameters.  The set of particles involved

openmmapi/include/openmm/HarmonicBondForce.h

@@ -92,7 +92,7 @@ public:
     /**
      * Update the per-bond parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setBondParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setBondParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * The only information this method updates is the values of per-bond parameters.  The set of particles involved

openmmapi/include/openmm/NonbondedForce.h

@@ -343,7 +343,7 @@ public:
      * Update the particle and exception parameters in a Context to match those stored in this Force object.  This method
      * provides an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
      * Simply call setParticleParameters() and setExceptionParameters() to modify this object's parameters, then call
-     * updateParametersInState() to copy them over to the Context.
+     * updateParametersInContext() to copy them over to the Context.
      * 
      * This method has several limitations.  The only information it updates is the parameters of particles and exceptions.
      * All other aspects of the Force (the nonbonded method, the cutoff distance, etc.) are unaffected and can only be

openmmapi/include/openmm/PeriodicTorsionForce.h

@@ -101,7 +101,7 @@ public:
     /**
      * Update the per-torsion parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setTorsionParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setTorsionParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * The only information this method updates is the values of per-torsion parameters.  The set of particles involved

openmmapi/include/openmm/RBTorsionForce.h

@@ -110,7 +110,7 @@ public:
     /**
      * Update the per-torsion parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setTorsionParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setTorsionParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * The only information this method updates is the values of per-torsion parameters.  The set of particles involved

plugins/amoeba/openmmapi/include/openmm/AmoebaAngleForce.h

@@ -159,7 +159,7 @@ public:
     /**
      * Update the per-angle parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setAngleParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setAngleParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * The only information this method updates is the values of per-angle parameters.  The set of particles involved

plugins/amoeba/openmmapi/include/openmm/AmoebaBondForce.h

@@ -131,7 +131,7 @@ public:
     /**
      * Update the per-bond parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setBondParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setBondParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * The only information this method updates is the values of per-bond parameters.  The set of particles involved

plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h

@@ -156,7 +156,7 @@ public:
     /**
      * Update the per-particle parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setParticleParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setParticleParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * The only information this method updates is the values of per-particle parameters.  All other aspects of the Force

plugins/amoeba/openmmapi/include/openmm/AmoebaInPlaneAngleForce.h

@@ -164,7 +164,7 @@ public:
     /**
      * Update the per-angle parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setAngleParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setAngleParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * The only information this method updates is the values of per-angle parameters.  The set of particles involved

plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h

@@ -340,7 +340,7 @@ public:
     /**
      * Update the multipole parameters in a Context to match those stored in this Force object.  This method
      * provides an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setMultipoleParameters() to modify this object's parameters, then call updateParametersInState() to
+     * Simply call setMultipoleParameters() to modify this object's parameters, then call updateParametersInContext() to
      * copy them over to the Context.
      * 
      * This method has several limitations.  The only information it updates is the parameters of multipoles.

plugins/amoeba/openmmapi/include/openmm/AmoebaOutOfPlaneBendForce.h

@@ -156,7 +156,7 @@ public:
     /**
      * Update the per-bend term parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setOutOfPlaneBendParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setOutOfPlaneBendParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * The only information this method updates is the values of per-bend term parameters.  The set of particles involved

plugins/amoeba/openmmapi/include/openmm/AmoebaPiTorsionForce.h

@@ -106,7 +106,7 @@ public:
     /**
      * Update the per-torsion parameters in a Context to match those stored in this Force object.  This method provides
      * an efficient method to update certain parameters in an existing Context without needing to reinitialize it.
-     * Simply call setPiTorsionParameters() to modify this object's parameters, then call updateParametersInState()
+     * Simply call setPiTorsionParameters() to modify this object's parameters, then call updateParametersInContext()
      * to copy them over to the Context.
      * 
      * The only information this method updates is the values of per-torsion parameters.  The set of particles involved