Fix up some of the documentation and add the usesPeriodicBoundaryConditions to

the barostats and andersen thermostat.

openmmapi/include/openmm/AndersenThermostat.h

@@ -117,6 +117,13 @@ public:
     void setRandomNumberSeed(int seed) {
         randomNumberSeed = seed;
     }
+    /**
+     * Returns whether or not this force makes use of periodic boundary
+     * conditions.
+     *
+     * @returns true if force uses PBC and false otherwise
+     */
+    bool usesPeriodicBoundaryConditions() const {return false;}
 protected:
     ForceImpl* createImpl() const;
 private:

openmmapi/include/openmm/CMMotionRemover.h

@@ -61,6 +61,13 @@ public:
     void setFrequency(int freq) {
         frequency = freq;
     }
+    /**
+     * Returns whether or not this force makes use of periodic boundary
+     * conditions.
+     *
+     * @returns true if force uses PBC and false otherwise
+     */
+    bool usesPeriodicBoundaryConditions() const {return false;}
 protected:
     ForceImpl* createImpl() const;
 private:

openmmapi/include/openmm/CustomGBForce.h

@@ -527,7 +527,7 @@ public:
      * Returns whether or not this force makes use of periodic boundary
      * conditions.
      *
-     * @returns true if nonbondedMethod uses PBC and false otherwise
+     * @returns true if force uses PBC and false otherwise
      */
     bool usesPeriodicBoundaryConditions() const {
         return nonbondedMethod == CustomGBForce::CutoffPeriodic;

openmmapi/include/openmm/CustomHbondForce.h

@@ -447,7 +447,7 @@ public:
      * Returns whether or not this force makes use of periodic boundary
      * conditions.
      *
-     * @returns true if nonbondedMethod uses PBC and false otherwise
+     * @returns true if force uses PBC and false otherwise
      */
     bool usesPeriodicBoundaryConditions() const {
         return nonbondedMethod == CustomHbondForce::CutoffPeriodic;

openmmapi/include/openmm/CustomManyParticleForce.h

@@ -465,7 +465,7 @@ public:
      * Returns whether or not this force makes use of periodic boundary
      * conditions.
      *
-     * @returns true if nonbondedMethod uses PBC and false otherwise
+     * @returns true if force uses PBC and false otherwise
      */
     bool usesPeriodicBoundaryConditions() const {
         return nonbondedMethod == CustomManyParticleForce::CutoffPeriodic;

openmmapi/include/openmm/CustomNonbondedForce.h

@@ -468,7 +468,7 @@ public:
      * Returns whether or not this force makes use of periodic boundary
      * conditions.
      *
-     * @returns true if nonbondedMethod uses PBC and false otherwise
+     * @returns true if force uses PBC and false otherwise
      */
     bool usesPeriodicBoundaryConditions() const {
         return nonbondedMethod == CustomNonbondedForce::CutoffPeriodic;

openmmapi/include/openmm/CustomTorsionForce.h

@@ -209,7 +209,7 @@ public:
      * Returns whether or not this force makes use of periodic boundary
      * conditions.
      *
-     * @returns true if nonbondedMethod uses PBC and false otherwise
+     * @returns true if force uses PBC and false otherwise
      */
     bool usesPeriodicBoundaryConditions() const {return false;}
 protected:

openmmapi/include/openmm/GBSAOBCForce.h

@@ -188,7 +188,7 @@ public:
      * Returns whether or not this force makes use of periodic boundary
      * conditions.
      *
-     * @returns true if nonbondedMethod uses PBC and false otherwise
+     * @returns true if force uses PBC and false otherwise
      */
     bool usesPeriodicBoundaryConditions() const {
         return nonbondedMethod == GBSAOBCForce::CutoffPeriodic;

openmmapi/include/openmm/GBVIForce.h

@@ -233,7 +233,7 @@ public:
      * Returns whether or not this force makes use of periodic boundary
      * conditions.
      *
-     * @returns true if nonbondedMethod uses PBC and false otherwise
+     * @returns true if force uses PBC and false otherwise
      */
     bool usesPeriodicBoundaryConditions() const {
         return nonbondedMethod == GBVIForce::CutoffPeriodic;

openmmapi/include/openmm/HarmonicAngleForce.h

@@ -106,7 +106,7 @@ public:
      * Returns whether or not this force makes use of periodic boundary
      * conditions.
      *
-     * @returns true if nonbondedMethod uses PBC and false otherwise
+     * @returns true if force uses PBC and false otherwise
      */
     bool usesPeriodicBoundaryConditions() const {return false;}
 protected:

openmmapi/include/openmm/HarmonicBondForce.h

@@ -103,7 +103,7 @@ public:
      * Returns whether or not this force makes use of periodic boundary
      * conditions.
      *
-     * @returns true if nonbondedMethod uses PBC and false otherwise
+     * @returns true if force uses PBC and false otherwise
      */
     bool usesPeriodicBoundaryConditions() const {return false;}
 protected:

openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h

@@ -171,6 +171,13 @@ public:
     void setRandomNumberSeed(int seed) {
         randomNumberSeed = seed;
     }
+    /**
+     * Returns whether or not this force makes use of periodic boundary
+     * conditions.
+     *
+     * @returns true if force uses PBC and false otherwise
+     */
+    bool usesPeriodicBoundaryConditions() const {return true;}
 protected:
     ForceImpl* createImpl() const;
 private:

openmmapi/include/openmm/MonteCarloBarostat.h

@@ -127,6 +127,13 @@ public:
     void setRandomNumberSeed(int seed) {
         randomNumberSeed = seed;
     }
+    /**
+     * Returns whether or not this force makes use of periodic boundary
+     * conditions.
+     *
+     * @returns true if force uses PBC and false otherwise
+     */
+    bool usesPeriodicBoundaryConditions() const {return true;}
 protected:
     ForceImpl* createImpl() const;
 private:

openmmapi/include/openmm/MonteCarloMembraneBarostat.h

@@ -224,6 +224,13 @@ public:
     void setRandomNumberSeed(int seed) {
         randomNumberSeed = seed;
     }
+    /**
+     * Returns whether or not this force makes use of periodic boundary
+     * conditions.
+     *
+     * @returns true if force uses PBC and false otherwise
+     */
+    bool usesPeriodicBoundaryConditions() const {return true;}
 protected:
     ForceImpl* createImpl() const;
 private:

openmmapi/include/openmm/NonbondedForce.h

@@ -356,7 +356,7 @@ public:
      * Returns whether or not this force makes use of periodic boundary
      * conditions.
      *
-     * @returns true if nonbondedMethod uses PBC and false otherwise
+     * @returns true if force uses PBC and false otherwise
      */
     bool usesPeriodicBoundaryConditions() const {
         return nonbondedMethod == NonbondedForce::CutoffPeriodic ||

openmmapi/include/openmm/PeriodicTorsionForce.h

@@ -112,7 +112,7 @@ public:
      * Returns whether or not this force makes use of periodic boundary
      * conditions.
      *
-     * @returns true if nonbondedMethod uses PBC and false otherwise
+     * @returns true if force uses PBC and false otherwise
      */
     bool usesPeriodicBoundaryConditions() const {return false;}
 protected:

openmmapi/include/openmm/RBTorsionForce.h

@@ -121,7 +121,7 @@ public:
      * Returns whether or not this force makes use of periodic boundary
      * conditions.
      *
-     * @returns true if nonbondedMethod uses PBC and false otherwise
+     * @returns true if force uses PBC and false otherwise
      */
     bool usesPeriodicBoundaryConditions() const {return false;}
 protected: