Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
tsoc
openmm
Commits
1647f1e9
Commit
1647f1e9
authored
Mar 17, 2016
by
peastman
Browse files
Renamed enums that caused Fortran compiler errors
parent
38f8d5f4
Changes
6
Hide whitespace changes
Inline
Side-by-side
Showing
6 changed files
with
26 additions
and
26 deletions
+26
-26
openmmapi/include/openmm/CustomIntegrator.h
openmmapi/include/openmm/CustomIntegrator.h
+4
-4
openmmapi/src/CustomIntegrator.cpp
openmmapi/src/CustomIntegrator.cpp
+3
-3
openmmapi/src/CustomIntegratorUtilities.cpp
openmmapi/src/CustomIntegratorUtilities.cpp
+5
-5
platforms/cuda/src/CudaKernels.cpp
platforms/cuda/src/CudaKernels.cpp
+5
-5
platforms/opencl/src/OpenCLKernels.cpp
platforms/opencl/src/OpenCLKernels.cpp
+5
-5
platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp
.../reference/src/SimTKReference/ReferenceCustomDynamics.cpp
+4
-4
No files found.
openmmapi/include/openmm/CustomIntegrator.h
View file @
1647f1e9
...
@@ -9,7 +9,7 @@
...
@@ -9,7 +9,7 @@
* Biological Structures at Stanford, funded under the NIH Roadmap for *
* Biological Structures at Stanford, funded under the NIH Roadmap for *
* Medical Research, grant U54 GM072970. See https://simtk.org. *
* Medical Research, grant U54 GM072970. See https://simtk.org. *
* *
* *
* Portions copyright (c) 2011-201
2
Stanford University and the Authors. *
* Portions copyright (c) 2011-201
6
Stanford University and the Authors. *
* Authors: Peter Eastman *
* Authors: Peter Eastman *
* Contributors: *
* Contributors: *
* *
* *
...
@@ -266,15 +266,15 @@ public:
...
@@ -266,15 +266,15 @@ public:
/**
/**
* Begin an "if" block.
* Begin an "if" block.
*/
*/
Begin
IfBlock
=
6
,
IfBlock
Start
=
6
,
/**
/**
* Begin a while" block.
* Begin a while" block.
*/
*/
Begin
WhileBlock
=
7
,
WhileBlock
Start
=
7
,
/**
/**
* End an "if" or "while" block.
* End an "if" or "while" block.
*/
*/
End
Block
=
8
Block
End
=
8
};
};
/**
/**
* Create a CustomIntegrator.
* Create a CustomIntegrator.
...
...
openmmapi/src/CustomIntegrator.cpp
View file @
1647f1e9
...
@@ -248,21 +248,21 @@ int CustomIntegrator::addUpdateContextState() {
...
@@ -248,21 +248,21 @@ int CustomIntegrator::addUpdateContextState() {
int
CustomIntegrator
::
beginIfBlock
(
const
string
&
expression
)
{
int
CustomIntegrator
::
beginIfBlock
(
const
string
&
expression
)
{
if
(
owner
!=
NULL
)
if
(
owner
!=
NULL
)
throw
OpenMMException
(
"The integrator cannot be modified after it is bound to a context"
);
throw
OpenMMException
(
"The integrator cannot be modified after it is bound to a context"
);
computations
.
push_back
(
ComputationInfo
(
Begin
IfBlock
,
""
,
expression
));
computations
.
push_back
(
ComputationInfo
(
IfBlock
Start
,
""
,
expression
));
return
computations
.
size
()
-
1
;
return
computations
.
size
()
-
1
;
}
}
int
CustomIntegrator
::
beginWhileBlock
(
const
string
&
expression
)
{
int
CustomIntegrator
::
beginWhileBlock
(
const
string
&
expression
)
{
if
(
owner
!=
NULL
)
if
(
owner
!=
NULL
)
throw
OpenMMException
(
"The integrator cannot be modified after it is bound to a context"
);
throw
OpenMMException
(
"The integrator cannot be modified after it is bound to a context"
);
computations
.
push_back
(
ComputationInfo
(
Begin
WhileBlock
,
""
,
expression
));
computations
.
push_back
(
ComputationInfo
(
WhileBlock
Start
,
""
,
expression
));
return
computations
.
size
()
-
1
;
return
computations
.
size
()
-
1
;
}
}
int
CustomIntegrator
::
endBlock
()
{
int
CustomIntegrator
::
endBlock
()
{
if
(
owner
!=
NULL
)
if
(
owner
!=
NULL
)
throw
OpenMMException
(
"The integrator cannot be modified after it is bound to a context"
);
throw
OpenMMException
(
"The integrator cannot be modified after it is bound to a context"
);
computations
.
push_back
(
ComputationInfo
(
End
Block
,
""
,
""
));
computations
.
push_back
(
ComputationInfo
(
Block
End
,
""
,
""
));
return
computations
.
size
()
-
1
;
return
computations
.
size
()
-
1
;
}
}
...
...
openmmapi/src/CustomIntegratorUtilities.cpp
View file @
1647f1e9
...
@@ -87,7 +87,7 @@ void CustomIntegratorUtilities::analyzeComputations(const ContextImpl& context,
...
@@ -87,7 +87,7 @@ void CustomIntegratorUtilities::analyzeComputations(const ContextImpl& context,
for
(
int
step
=
0
;
step
<
numSteps
;
step
++
)
{
for
(
int
step
=
0
;
step
<
numSteps
;
step
++
)
{
string
expression
;
string
expression
;
integrator
.
getComputationStep
(
step
,
stepType
[
step
],
stepVariable
[
step
],
expression
);
integrator
.
getComputationStep
(
step
,
stepType
[
step
],
stepVariable
[
step
],
expression
);
if
(
stepType
[
step
]
==
CustomIntegrator
::
Begin
IfBlock
||
stepType
[
step
]
==
CustomIntegrator
::
Begin
WhileBlock
)
{
if
(
stepType
[
step
]
==
CustomIntegrator
::
IfBlock
Start
||
stepType
[
step
]
==
CustomIntegrator
::
WhileBlock
Start
)
{
// This step involves a condition.
// This step involves a condition.
string
lhs
,
rhs
;
string
lhs
,
rhs
;
...
@@ -158,9 +158,9 @@ void CustomIntegratorUtilities::analyzeComputations(const ContextImpl& context,
...
@@ -158,9 +158,9 @@ void CustomIntegratorUtilities::analyzeComputations(const ContextImpl& context,
vector
<
int
>
blockStart
;
vector
<
int
>
blockStart
;
blockEnd
.
resize
(
numSteps
,
-
1
);
blockEnd
.
resize
(
numSteps
,
-
1
);
for
(
int
step
=
0
;
step
<
numSteps
;
step
++
)
{
for
(
int
step
=
0
;
step
<
numSteps
;
step
++
)
{
if
(
stepType
[
step
]
==
CustomIntegrator
::
Begin
IfBlock
||
stepType
[
step
]
==
CustomIntegrator
::
Begin
WhileBlock
)
if
(
stepType
[
step
]
==
CustomIntegrator
::
IfBlock
Start
||
stepType
[
step
]
==
CustomIntegrator
::
WhileBlock
Start
)
blockStart
.
push_back
(
step
);
blockStart
.
push_back
(
step
);
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
End
Block
)
{
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
Block
End
)
{
if
(
blockStart
.
size
()
==
0
)
{
if
(
blockStart
.
size
()
==
0
)
{
stringstream
error
(
"CustomIntegrator: Unexpected end of block at computation "
);
stringstream
error
(
"CustomIntegrator: Unexpected end of block at computation "
);
error
<<
step
;
error
<<
step
;
...
@@ -207,7 +207,7 @@ void CustomIntegratorUtilities::enumeratePaths(int firstStep, vector<int> steps,
...
@@ -207,7 +207,7 @@ void CustomIntegratorUtilities::enumeratePaths(int firstStep, vector<int> steps,
jumps
[
step
]
=
-
1
;
jumps
[
step
]
=
-
1
;
step
=
nextStep
;
step
=
nextStep
;
}
}
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
Begin
IfBlock
)
{
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
IfBlock
Start
)
{
// Consider skipping the block.
// Consider skipping the block.
enumeratePaths
(
blockEnd
[
step
]
+
1
,
steps
,
jumps
,
blockEnd
,
stepType
,
needsForces
,
needsEnergy
,
invalidatesForces
,
forceGroup
,
computeBoth
);
enumeratePaths
(
blockEnd
[
step
]
+
1
,
steps
,
jumps
,
blockEnd
,
stepType
,
needsForces
,
needsEnergy
,
invalidatesForces
,
forceGroup
,
computeBoth
);
...
@@ -216,7 +216,7 @@ void CustomIntegratorUtilities::enumeratePaths(int firstStep, vector<int> steps,
...
@@ -216,7 +216,7 @@ void CustomIntegratorUtilities::enumeratePaths(int firstStep, vector<int> steps,
step
++
;
step
++
;
}
}
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
Begin
WhileBlock
&&
jumps
[
step
]
!=
-
2
)
{
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
WhileBlock
Start
&&
jumps
[
step
]
!=
-
2
)
{
// Consider skipping the block.
// Consider skipping the block.
enumeratePaths
(
blockEnd
[
step
]
+
1
,
steps
,
jumps
,
blockEnd
,
stepType
,
needsForces
,
needsEnergy
,
invalidatesForces
,
forceGroup
,
computeBoth
);
enumeratePaths
(
blockEnd
[
step
]
+
1
,
steps
,
jumps
,
blockEnd
,
stepType
,
needsForces
,
needsEnergy
,
invalidatesForces
,
forceGroup
,
computeBoth
);
...
...
platforms/cuda/src/CudaKernels.cpp
View file @
1647f1e9
...
@@ -6236,9 +6236,9 @@ void CudaIntegrateCustomStepKernel::prepareForComputation(ContextImpl& context,
...
@@ -6236,9 +6236,9 @@ void CudaIntegrateCustomStepKernel::prepareForComputation(ContextImpl& context,
for
(
int
step
=
0
;
step
<
numSteps
;
step
++
)
{
for
(
int
step
=
0
;
step
<
numSteps
;
step
++
)
{
string
expr
;
string
expr
;
integrator
.
getComputationStep
(
step
,
stepType
[
step
],
variable
[
step
],
expr
);
integrator
.
getComputationStep
(
step
,
stepType
[
step
],
variable
[
step
],
expr
);
if
(
stepType
[
step
]
==
CustomIntegrator
::
Begin
WhileBlock
)
if
(
stepType
[
step
]
==
CustomIntegrator
::
WhileBlock
Start
)
blockEnd
[
blockEnd
[
step
]]
=
step
;
// Record where to branch back to.
blockEnd
[
blockEnd
[
step
]]
=
step
;
// Record where to branch back to.
if
(
stepType
[
step
]
==
CustomIntegrator
::
ComputeGlobal
||
stepType
[
step
]
==
CustomIntegrator
::
Begin
IfBlock
||
stepType
[
step
]
==
CustomIntegrator
::
Begin
WhileBlock
)
if
(
stepType
[
step
]
==
CustomIntegrator
::
ComputeGlobal
||
stepType
[
step
]
==
CustomIntegrator
::
IfBlock
Start
||
stepType
[
step
]
==
CustomIntegrator
::
WhileBlock
Start
)
for
(
int
i
=
0
;
i
<
(
int
)
expression
[
step
].
size
();
i
++
)
for
(
int
i
=
0
;
i
<
(
int
)
expression
[
step
].
size
();
i
++
)
globalExpressions
[
step
].
push_back
(
expression
[
step
][
i
].
createCompiledExpression
());
globalExpressions
[
step
].
push_back
(
expression
[
step
][
i
].
createCompiledExpression
());
}
}
...
@@ -6685,15 +6685,15 @@ void CudaIntegrateCustomStepKernel::execute(ContextImpl& context, CustomIntegrat
...
@@ -6685,15 +6685,15 @@ void CudaIntegrateCustomStepKernel::execute(ContextImpl& context, CustomIntegrat
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
ConstrainVelocities
)
{
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
ConstrainVelocities
)
{
cu
.
getIntegrationUtilities
().
applyVelocityConstraints
(
integrator
.
getConstraintTolerance
());
cu
.
getIntegrationUtilities
().
applyVelocityConstraints
(
integrator
.
getConstraintTolerance
());
}
}
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
Begin
IfBlock
)
{
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
IfBlock
Start
)
{
if
(
!
evaluateCondition
(
step
))
if
(
!
evaluateCondition
(
step
))
nextStep
=
blockEnd
[
step
]
+
1
;
nextStep
=
blockEnd
[
step
]
+
1
;
}
}
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
Begin
WhileBlock
)
{
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
WhileBlock
Start
)
{
if
(
!
evaluateCondition
(
step
))
if
(
!
evaluateCondition
(
step
))
nextStep
=
blockEnd
[
step
]
+
1
;
nextStep
=
blockEnd
[
step
]
+
1
;
}
}
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
End
Block
)
{
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
Block
End
)
{
if
(
blockEnd
[
step
]
!=
-
1
)
if
(
blockEnd
[
step
]
!=
-
1
)
nextStep
=
blockEnd
[
step
];
// Return to the start of a while block.
nextStep
=
blockEnd
[
step
];
// Return to the start of a while block.
}
}
...
...
platforms/opencl/src/OpenCLKernels.cpp
View file @
1647f1e9
...
@@ -6513,9 +6513,9 @@ void OpenCLIntegrateCustomStepKernel::prepareForComputation(ContextImpl& context
...
@@ -6513,9 +6513,9 @@ void OpenCLIntegrateCustomStepKernel::prepareForComputation(ContextImpl& context
for
(
int
step
=
0
;
step
<
numSteps
;
step
++
)
{
for
(
int
step
=
0
;
step
<
numSteps
;
step
++
)
{
string
expr
;
string
expr
;
integrator
.
getComputationStep
(
step
,
stepType
[
step
],
variable
[
step
],
expr
);
integrator
.
getComputationStep
(
step
,
stepType
[
step
],
variable
[
step
],
expr
);
if
(
stepType
[
step
]
==
CustomIntegrator
::
Begin
WhileBlock
)
if
(
stepType
[
step
]
==
CustomIntegrator
::
WhileBlock
Start
)
blockEnd
[
blockEnd
[
step
]]
=
step
;
// Record where to branch back to.
blockEnd
[
blockEnd
[
step
]]
=
step
;
// Record where to branch back to.
if
(
stepType
[
step
]
==
CustomIntegrator
::
ComputeGlobal
||
stepType
[
step
]
==
CustomIntegrator
::
Begin
IfBlock
||
stepType
[
step
]
==
CustomIntegrator
::
Begin
WhileBlock
)
if
(
stepType
[
step
]
==
CustomIntegrator
::
ComputeGlobal
||
stepType
[
step
]
==
CustomIntegrator
::
IfBlock
Start
||
stepType
[
step
]
==
CustomIntegrator
::
WhileBlock
Start
)
for
(
int
i
=
0
;
i
<
(
int
)
expression
[
step
].
size
();
i
++
)
for
(
int
i
=
0
;
i
<
(
int
)
expression
[
step
].
size
();
i
++
)
globalExpressions
[
step
].
push_back
(
expression
[
step
][
i
].
createCompiledExpression
());
globalExpressions
[
step
].
push_back
(
expression
[
step
][
i
].
createCompiledExpression
());
}
}
...
@@ -6961,15 +6961,15 @@ void OpenCLIntegrateCustomStepKernel::execute(ContextImpl& context, CustomIntegr
...
@@ -6961,15 +6961,15 @@ void OpenCLIntegrateCustomStepKernel::execute(ContextImpl& context, CustomIntegr
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
ConstrainVelocities
)
{
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
ConstrainVelocities
)
{
cl
.
getIntegrationUtilities
().
applyVelocityConstraints
(
integrator
.
getConstraintTolerance
());
cl
.
getIntegrationUtilities
().
applyVelocityConstraints
(
integrator
.
getConstraintTolerance
());
}
}
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
Begin
IfBlock
)
{
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
IfBlock
Start
)
{
if
(
!
evaluateCondition
(
step
))
if
(
!
evaluateCondition
(
step
))
nextStep
=
blockEnd
[
step
]
+
1
;
nextStep
=
blockEnd
[
step
]
+
1
;
}
}
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
Begin
WhileBlock
)
{
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
WhileBlock
Start
)
{
if
(
!
evaluateCondition
(
step
))
if
(
!
evaluateCondition
(
step
))
nextStep
=
blockEnd
[
step
]
+
1
;
nextStep
=
blockEnd
[
step
]
+
1
;
}
}
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
End
Block
)
{
else
if
(
stepType
[
step
]
==
CustomIntegrator
::
Block
End
)
{
if
(
blockEnd
[
step
]
!=
-
1
)
if
(
blockEnd
[
step
]
!=
-
1
)
nextStep
=
blockEnd
[
step
];
// Return to the start of a while block.
nextStep
=
blockEnd
[
step
];
// Return to the start of a while block.
}
}
...
...
platforms/reference/src/SimTKReference/ReferenceCustomDynamics.cpp
View file @
1647f1e9
...
@@ -107,7 +107,7 @@ void ReferenceCustomDynamics::update(ContextImpl& context, int numberOfAtoms, ve
...
@@ -107,7 +107,7 @@ void ReferenceCustomDynamics::update(ContextImpl& context, int numberOfAtoms, ve
for
(
int
i
=
0
;
i
<
numSteps
;
i
++
)
{
for
(
int
i
=
0
;
i
<
numSteps
;
i
++
)
{
for
(
int
j
=
0
;
j
<
(
int
)
expressions
[
i
].
size
();
j
++
)
for
(
int
j
=
0
;
j
<
(
int
)
expressions
[
i
].
size
();
j
++
)
stepExpressions
[
i
].
push_back
(
expressions
[
i
][
j
].
createProgram
());
stepExpressions
[
i
].
push_back
(
expressions
[
i
][
j
].
createProgram
());
if
(
stepType
[
i
]
==
CustomIntegrator
::
Begin
WhileBlock
)
if
(
stepType
[
i
]
==
CustomIntegrator
::
WhileBlock
Start
)
blockEnd
[
blockEnd
[
i
]]
=
i
;
// Record where to branch back to.
blockEnd
[
blockEnd
[
i
]]
=
i
;
// Record where to branch back to.
}
}
...
@@ -213,17 +213,17 @@ void ReferenceCustomDynamics::update(ContextImpl& context, int numberOfAtoms, ve
...
@@ -213,17 +213,17 @@ void ReferenceCustomDynamics::update(ContextImpl& context, int numberOfAtoms, ve
globals
.
insert
(
context
.
getParameters
().
begin
(),
context
.
getParameters
().
end
());
globals
.
insert
(
context
.
getParameters
().
begin
(),
context
.
getParameters
().
end
());
break
;
break
;
}
}
case
CustomIntegrator
::
Begin
IfBlock
:
{
case
CustomIntegrator
::
IfBlock
Start
:
{
if
(
!
evaluateCondition
(
step
,
globals
))
if
(
!
evaluateCondition
(
step
,
globals
))
nextStep
=
blockEnd
[
step
]
+
1
;
nextStep
=
blockEnd
[
step
]
+
1
;
break
;
break
;
}
}
case
CustomIntegrator
::
Begin
WhileBlock
:
{
case
CustomIntegrator
::
WhileBlock
Start
:
{
if
(
!
evaluateCondition
(
step
,
globals
))
if
(
!
evaluateCondition
(
step
,
globals
))
nextStep
=
blockEnd
[
step
]
+
1
;
nextStep
=
blockEnd
[
step
]
+
1
;
break
;
break
;
}
}
case
CustomIntegrator
::
End
Block
:
{
case
CustomIntegrator
::
Block
End
:
{
if
(
blockEnd
[
step
]
!=
-
1
)
if
(
blockEnd
[
step
]
!=
-
1
)
nextStep
=
blockEnd
[
step
];
// Return to the start of a while block.
nextStep
=
blockEnd
[
step
];
// Return to the start of a while block.
break
;
break
;
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment