remove excessive comments

docs-source/python-api/conf.py

 # -*- coding: utf-8 -*-
-#
-# MDTraj documentation build configuration file, created by
-# sphinx-quickstart on Tue Jun 11 21:23:28 2013.
-#
-# This file is execfile()d with the current directory set to its containing dir.
-#
-# Note that not all possible configuration values are present in this
-# autogenerated file.
-#
-# All configuration values have a default; values that are commented out
-# serve to show the default.
 
 import sys
 import os
-
 import simtk.openmm.version
 
-# If extensions (or modules to document with autodoc) are in another directory,
-# add these directories to sys.path here. If the directory is relative to the
-# documentation root, use os.path.abspath to make it absolute, like shown here.
-#sys.path.insert(0, os.path.abspath('.'))
-
-# -- General configuration -----------------------------------------------------
-
-# If your documentation needs a minimal Sphinx version, state it here.
-#needs_sphinx = '1.0'
-
-# Add any Sphinx extension module names here, as strings. They can be extensions
-# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
 extensions = ['sphinx.ext.mathjax', 'sphinx.ext.ifconfig', 'sphinx.ext.autosummary',
               'sphinx.ext.autodoc', 'numpydoc', 'sphinx.ext.intersphinx',]
 
 autosummary_generate = True
 autodoc_default_flags = ['members', 'inherited-members']
 
-html_theme_options = {
-    'logo': 'OPENMMLogo.png',
-    'description': 'A high performance GPU molecular simulation toolkit',
-    'github_user': 'pandegroup',
-    'github_repo': 'openmm',
-    'travis_button': True,
-}
-
-html_sidebars = {
-    '**': [
-        'about.html',
-        'navigation.html',
-        'searchbox.html',
-    ]
-}
-
-
 _python_doc_base = 'http://docs.python.org/2.7'
 intersphinx_mapping = {
     _python_doc_base: None,
@@ -62,9 +21,6 @@ templates_path = ['_templates']
 # The suffix of source filenames.
 source_suffix = '.rst'
 
-# The encoding of source files.
-#source_encoding = 'utf-8-sig'
-
 # The master toctree document.
 master_doc = 'index'
 
@@ -72,76 +28,38 @@ master_doc = 'index'
 project = u'OpenMM'
 copyright = u'2015, Stanford University and the Authors'
 
-# The version info for the project you're documenting, acts as replacement for
-# |version| and |release|, also used in various other places throughout the
-# built documents.
-#
 # The short X.Y version.
 version = simtk.openmm.version.short_version
 # The full version, including alpha/beta/rc tags.
 release = simtk.openmm.version.full_version
 
-# The language for content autogenerated by Sphinx. Refer to documentation
-# for a list of supported languages.
-#language = None
-
-# There are two options for replacing |today|: either, you set today to some
-# non-false value, then it is used:
-#today = ''
-# Else, today_fmt is used as the format for a strftime call.
-#today_fmt = '%B %d, %Y'
-
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
 exclude_patterns = ['_build']
 
-# The reST default role (used for this markup: `text`) to use for all documents.
-#default_role = None
-
-# If true, '()' will be appended to :func: etc. cross-reference text.
-#add_function_parentheses = True
-
-# If true, the current module name will be prepended to all description
-# unit titles (such as .. function::).
-add_module_names = False
-
-# If true, sectionauthor and moduleauthor directives will be shown in the
-# output. They are ignored by default.
-#show_authors = False
 
 # The name of the Pygments (syntax highlighting) style to use.
 pygments_style = 'sphinx'
 
-# A list of ignored prefixes for module index sorting.
-#modindex_common_prefix = []
-
-
-# -- Options for HTML output ---------------------------------------------------
 
 # The theme to use for HTML and HTML Help pages.  See the documentation for
 # a list of builtin themes.
 html_theme = "alabaster"
+html_theme_options = {
+    'logo': 'OPENMMLogo.png',
+    'description': 'A high performance GPU molecular simulation toolkit',
+    'github_user': 'pandegroup',
+    'github_repo': 'openmm',
+    'travis_button': True,
+}
 
-# Theme options are theme-specific and customize the look and feel of a theme
-# further.  For a list of options available for each theme, see the
-# documentation.
-#html_theme_options = {}
 
 # Add any paths that contain custom themes here, relative to this directory.
 html_theme_path = []
 
-
-# The name for this set of Sphinx documents.  If None, it defaults to
-# "<project> v<release> documentation".
-#html_title = None
-
 # A shorter title for the navigation bar.  Default is the same as html_title.
 #html_short_title = None
 
-# The name of an image file (relative to this directory) to place at the top
-# of the sidebar.
-html_logo = ''
-
 # The name of an image file (within the static path) to use as favicon of the
 # docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
 # pixels large.
@@ -152,49 +70,14 @@ html_logo = ''
 # so a file named "default.css" will overwrite the builtin "default.css".
 html_static_path = ['_static']
 
-# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
-# using the given strftime format.
-#html_last_updated_fmt = '%b %d, %Y'
-
-# If true, SmartyPants will be used to convert quotes and dashes to
-# typographically correct entities.
-#html_use_smartypants = True
-
-# Custom sidebar templates, maps document names to template names.
-#html_sidebars = {}
-
-# Additional templates that should be rendered to pages, maps page names to
-# template names.
-#html_additional_pages = {}
-
-# If false, no module index is generated.
-#html_domain_indices = True
-
-# If false, no index is generated.
-#html_use_index = True
-
-# If true, the index is split into individual pages for each letter.
-#html_split_index = False
-
-# If true, links to the reST sources are added to the pages.
-#html_show_sourcelink = True
-
-# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
-#html_show_sphinx = True
-
-# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
-#html_show_copyright = True
-
-# If true, an OpenSearch description file will be output, and all pages will
-# contain a <link> tag referring to it.  The value of this option must be the
-# base URL from which the finished HTML is served.
-#html_use_opensearch = ''
-
-# This is the file name suffix for HTML files (e.g. ".xhtml").
-#html_file_suffix = None
+html_sidebars = {
+    '**': [
+        'about.html',
+        'navigation.html',
+        'searchbox.html',
+    ]
+}
 
-# Output file base name for HTML help builder.
-# htmlhelp_basename = ''
 
 autodoc_member_order = 'bysource'