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tsoc
openmm
Commits
04436ceb
Commit
04436ceb
authored
Aug 06, 2019
by
peastman
Browse files
Fixed Bondi radius for Cl
parent
bf7aee53
Changes
1
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wrappers/python/simtk/openmm/app/internal/customgbforces.py
wrappers/python/simtk/openmm/app/internal/customgbforces.py
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wrappers/python/simtk/openmm/app/internal/customgbforces.py
View file @
04436ceb
...
...
@@ -250,7 +250,7 @@ def _bondi_radii(topology):
E
.
silicon
:
2.1
,
E
.
phosphorus
:
1.85
,
E
.
sulfur
:
1.8
,
E
.
chlorine
:
1.
5
,
E
.
chlorine
:
1.
7
,
}
if
_have_numpy
:
...
...
@@ -272,7 +272,7 @@ def _mbondi_radii(topology, all_bonds = None):
E
.
silicon
:
2.1
,
E
.
phosphorus
:
1.85
,
E
.
sulfur
:
1.8
,
E
.
chlorine
:
1.
5
,
E
.
chlorine
:
1.
7
,
}
if
_have_numpy
:
radii
=
numpy
.
empty
(
topology
.
getNumAtoms
(),
numpy
.
double
)
...
...
@@ -310,7 +310,7 @@ def _mbondi2_radii(topology, all_bonds = None):
E
.
silicon
:
2.1
,
E
.
phosphorus
:
1.85
,
E
.
sulfur
:
1.8
,
E
.
chlorine
:
1.
5
,
E
.
chlorine
:
1.
7
,
}
if
_have_numpy
:
radii
=
numpy
.
empty
(
topology
.
getNumAtoms
(),
numpy
.
double
)
...
...
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