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Jaime Rodríguez-Guerra authored
* Add draft GHA-based CI for Linux * Fix events * Dup key * Fix path * Update env vars * More fixes * Fix env vars again * add doxygen * add sudo * Typo * upgrade CUDA * escape newlines * more backslashes * fix CUDA_APT * more env vars fixes * fix missing file * acumulate env_vars * build python wrappers only if requested * add pytest * use $GITHUB_ENV https://docs.github.com/en/free-pro-team@latest/actions/reference/workflow-commands-for-github-actions#environment-files * use ${GITHUB_WORKSPACE} * Pin older gromacs * add windows * Provide default values for unbound vars * fixes * this is powershell not cmd * update envs * win fix * make windows use cmd * Change install prefix * fixes * better env files * Increase timeout threshold * set xcode to 10.x * specify action version * fix sdk in macos * split jobs a bit more * build wrappers even if tests failed for core * revert & resort build/test * fix run logic? * install envs in D:\ * add more cudas * allow longer test times * sudo that * fix cuda ver checks * another little fix * one more * missing package * missing dev packages * missing backslash * add nvprof * factor scripts out * export CUDA_PATH * no quotes in env var * add more cudas * fix ci name * fix flags * typo * missing parenthesis * add cuda 11.2 urls * add retry loops for online installations * add library existence tests * verbose * fix sets * CPU and PME are not built in GPU variants; do not test for those * quote? * fix windows checks * add macos opencl * disable opencl tests on macos (but build anyway) * add docs * cd into build for docs! * install then cd * pin sphinxcontrib-bibtex * we need tex in the system * split docs into a separate job * simplify retrying * simplify retrying 2 * do install * fix tlmgr installation * more tex packages * one more * one more * add textcomp to docs * usepackage[utf8]{inputenc} * switch to xelatex? * add xetex * more fonts * do not use xindy * tables can't contain blocks and use tabularcolumns at the same time https://www.sphinx-doc.org/en/master/usage/restructuredtext/directives.html?highlight=tabular#directive-tabularcolumns * build libs in docs too * update docs deps; bring in pdfs * kill server after 404 checks * chage 404 checker * explicit locations needed * cumulative exit codes * override set -e * update README badges * add ppc / arm * missing vbar * not it * one too many extensions * do not test gromacs * manage workspace * source conda.sh * add python version to matrix vars * source first thing * disable unbound checks * add compilers * some more cuda stuff * add CPU only ppc64le * link through stubs * One more way to obtain HOST_USER_ID? * let cmake find cf's opencl * Try with GCC7 * add timeouts for docker based runs * add several attempts for stochastic failures * add tests with conda forge compilers * do not parallelize pytest in docker runs * exclude some known slow tests * enable ccache * forgot conda shell * No need for macos sdk retries * \ -> ^ * fix timestampt windows * export env vars for current step too * unneeded quotes windows? * disable compression on windows? * add ccache in docker too * group commands * fix syntax error * fix version spec * Increase timeout in Docker runs * heh, it's double colon * fix cache timestamp in windows * escape % with %% * ccache in docs too * don't use wrapper package in windows; call vcvarsall directly * More docker variants * Handle ccache env vars in yaml * Re-enable parallel pytest in Docker runs * Delete unwanted azure ymls that I didn't end up using * add some comments * Update badge URL * is that path messing with windows ccache? * add CI-README * Reduce CI matrix * increase timeouts * Add GCC7 on PPC QEmu again (temporarily, just for debugging) * add docker instructions for local debugging * fix start_docker_locally * skip some url checks in docs * Use new package name * update link
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