MANIFEST.in

include setup.py
include *.py
include *.txt
global-include README
recursive-include simtk     *.txt *.py
recursive-include openmm    *.txt *.py *.so *.dll *.lib *.dylib *.h
recursive-include src       *.txt *.py *.i *.c *.cxx *.h *.sh Doxyfile
prune src/swig_doxygen/doxygen/html
prune src/swig_doxygen/doxygen/xml
global-exclude CMakeLists.txt