__init__.py 1.19 KB
Newer Older
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
"""
OpenMM Application
"""
__docformat__ = "epytext en"

__author__ = "Peter Eastman"
__copyright__ = "Copyright 2011, Stanford University and Peter Eastman"
__credits__ = []
__license__ = "MIT"
__maintainer__ = "Peter Eastman"
__email__ = "peastman@stanford.edu"

from topology import Topology, Chain, Residue, Atom
from pdbfile import PDBFile
from forcefield import ForceField
from simulation import Simulation
from pdbreporter import PDBReporter
from amberprmtopfile import AmberPrmtopFile
from amberinpcrdfile import AmberInpcrdFile
from dcdfile import DCDFile
Peter Eastman's avatar
Peter Eastman committed
21
from gromacsgrofile import GromacsGroFile
Peter Eastman's avatar
Peter Eastman committed
22
from gromacstopfile import GromacsTopFile
23
from desmonddmsfile import DesmondDMSFile
24
from dcdreporter import DCDReporter
25
from modeller import Modeller
Peter Eastman's avatar
Peter Eastman committed
26
from statedatareporter import StateDataReporter
27
from element import Element
28
29
30
31
32
33
34
35
36
37
38
39
40

# Enumerated values

NoCutoff = forcefield.NoCutoff
CutoffNonPeriodic = forcefield.CutoffNonPeriodic
CutoffPeriodic = forcefield.CutoffPeriodic
Ewald = forcefield.Ewald
PME = forcefield.PME

HBonds = forcefield.HBonds
AllBonds = forcefield.AllBonds
HAngles = forcefield.HAngles

41
42
43
44
HCT = amberprmtopfile.HCT
OBC1 = amberprmtopfile.OBC1
OBC2 = amberprmtopfile.OBC2
GBn = amberprmtopfile.GBn