customGBEnergyN2_nvidia.cl

#define TILE_SIZE 32
#define STORE_DERIVATIVE_1(INDEX) derivBuffers##INDEX[offset1] += deriv##INDEX##_1;
#define STORE_DERIVATIVE_2(INDEX) derivBuffers##INDEX[offset2] += local_deriv##INDEX[get_local_id(0)];

/**
 * Compute a force based on pair interactions.
 */

__kernel __attribute__((reqd_work_group_size(WORK_GROUP_SIZE, 1, 1)))
void computeN2Energy(__global float4* forceBuffers, __global float* energyBuffer, __local float4* local_force,
	__global float4* posq, __local float4* local_posq, __global unsigned int* exclusions, __global unsigned int* exclusionIndices,
        __local float4* tempBuffer, __global unsigned int* tiles,
#ifdef USE_CUTOFF
        __global unsigned int* interactionFlags, __global unsigned int* interactionCount, float4 periodicBoxSize, float4 invPeriodicBoxSize
#else
        unsigned int numTiles
#endif
        PARAMETER_ARGUMENTS) {
#ifdef USE_CUTOFF
    unsigned int numTiles = interactionCount[0];
#endif
    unsigned int totalWarps = get_global_size(0)/TILE_SIZE;
    unsigned int warp = get_global_id(0)/TILE_SIZE;
    unsigned int pos = warp*numTiles/totalWarps;
    unsigned int end = (warp+1)*numTiles/totalWarps;
    float energy = 0.0f;
    unsigned int lasty = 0xFFFFFFFF;

    while (pos < end) {
        // Extract the coordinates of this tile
        unsigned int x = tiles[pos];
        unsigned int y = ((x >> 2) & 0x7fff)*TILE_SIZE;
        bool hasExclusions = (x & 0x1);
        x = (x>>17)*TILE_SIZE;
        unsigned int tgx = get_local_id(0) & (TILE_SIZE-1);
        unsigned int tbx = get_local_id(0) - tgx;
        unsigned int atom1 = x + tgx;
        float4 force = 0.0f;
        float4 posq1 = posq[atom1];
        LOAD_ATOM1_PARAMETERS
        if (x == y) {
            // This tile is on the diagonal.

            local_posq[get_local_id(0)] = posq1;
            LOAD_LOCAL_PARAMETERS_FROM_1
            unsigned int xi = x/TILE_SIZE;
            unsigned int tile = xi+xi*PADDED_NUM_ATOMS/TILE_SIZE-xi*(xi+1)/2;
#ifdef USE_EXCLUSIONS
            unsigned int excl = exclusions[exclusionIndices[tile]+tgx];
#endif
            for (unsigned int j = 0; j < TILE_SIZE; j++) {
#ifdef USE_EXCLUSIONS
                bool isExcluded = !(excl & 0x1);
#endif
                int atom2 = tbx+j;
                float4 posq2 = local_posq[atom2];
                float4 delta = (float4) (posq2.xyz - posq1.xyz, 0.0f);
#ifdef USE_PERIODIC
                delta.x -= floor(delta.x*invPeriodicBoxSize.x+0.5f)*periodicBoxSize.x;
                delta.y -= floor(delta.y*invPeriodicBoxSize.y+0.5f)*periodicBoxSize.y;
                delta.z -= floor(delta.z*invPeriodicBoxSize.z+0.5f)*periodicBoxSize.z;
#endif
                float r2 = delta.x*delta.x + delta.y*delta.y + delta.z*delta.z;
#ifdef USE_CUTOFF
                if (r2 < CUTOFF_SQUARED) {
#endif
                float r = SQRT(r2);
                LOAD_ATOM2_PARAMETERS
                atom2 = y+j;
                float dEdR = 0.0f;
                float tempEnergy = 0.0f;
                if (atom1 < NUM_ATOMS && atom2 < NUM_ATOMS && atom1 != atom2) {
                    COMPUTE_INTERACTION
                    dEdR /= -r;
                }
                energy += 0.5f*tempEnergy;
                delta.xyz *= dEdR;
                force.xyz -= delta.xyz;
#ifdef USE_CUTOFF
                }
#endif
#ifdef USE_EXCLUSIONS
                excl >>= 1;
#endif
            }

            // Write results
#ifdef USE_OUTPUT_BUFFER_PER_BLOCK
            unsigned int offset1 = x + tgx + (x/TILE_SIZE)*PADDED_NUM_ATOMS;
#else
            unsigned int offset1 = x + tgx + warp*PADDED_NUM_ATOMS;
#endif
            forceBuffers[offset1].xyz += force.xyz;
            STORE_DERIVATIVES_1
        }
        else {
            // This is an off-diagonal tile.

            if (lasty != y) {
                unsigned int j = y + tgx;
                local_posq[get_local_id(0)] = posq[j];
                LOAD_LOCAL_PARAMETERS_FROM_GLOBAL
            }
            local_force[get_local_id(0)] = 0.0f;
            CLEAR_LOCAL_DERIVATIVES
#ifdef USE_CUTOFF
            unsigned int flags = interactionFlags[pos];
            if (!hasExclusions && flags == 0) {
                // No interactions in this tile.
            }
            else
#endif
            {
                // Compute the full set of interactions in this tile.

                unsigned int xi = x/TILE_SIZE;
                unsigned int yi = y/TILE_SIZE;
                unsigned int tile = xi+yi*PADDED_NUM_ATOMS/TILE_SIZE-yi*(yi+1)/2;
#ifdef USE_EXCLUSIONS
                unsigned int excl = (hasExclusions ? exclusions[exclusionIndices[tile]+tgx] : 0xFFFFFFFF);
                excl = (excl >> tgx) | (excl << (TILE_SIZE - tgx));
#endif
                unsigned int tj = tgx;
                for (unsigned int j = 0; j < TILE_SIZE; j++) {
#ifdef USE_EXCLUSIONS
                    bool isExcluded = !(excl & 0x1);
#endif
                    int atom2 = tbx+tj;
                    float4 posq2 = local_posq[atom2];
                    float4 delta = (float4) (posq2.xyz - posq1.xyz, 0.0f);
#ifdef USE_PERIODIC
                    delta.x -= floor(delta.x*invPeriodicBoxSize.x+0.5f)*periodicBoxSize.x;
                    delta.y -= floor(delta.y*invPeriodicBoxSize.y+0.5f)*periodicBoxSize.y;
                    delta.z -= floor(delta.z*invPeriodicBoxSize.z+0.5f)*periodicBoxSize.z;
#endif
                    float r2 = delta.x*delta.x + delta.y*delta.y + delta.z*delta.z;
#ifdef USE_CUTOFF
                    if (r2 < CUTOFF_SQUARED) {
#endif
                    float r = SQRT(r2);
                    LOAD_ATOM2_PARAMETERS
                    atom2 = y+tj;
                    float dEdR = 0.0f;
                    float tempEnergy = 0.0f;
                    if (atom1 < NUM_ATOMS && atom2 < NUM_ATOMS) {
                        COMPUTE_INTERACTION
                        dEdR /= -r;
                    }
		    energy += tempEnergy;
                    delta.xyz *= dEdR;
                    force.xyz -= delta.xyz;
                    atom2 = tbx+tj;
                    local_force[atom2].xyz += delta.xyz;
                    RECORD_DERIVATIVE_2
#ifdef USE_CUTOFF
                    }
#endif
#ifdef USE_EXCLUSIONS
                    excl >>= 1;
#endif
                    tj = (tj + 1) & (TILE_SIZE - 1);
                }
            }

            // Write results
#ifdef USE_OUTPUT_BUFFER_PER_BLOCK
            unsigned int offset1 = x + tgx + (y/TILE_SIZE)*PADDED_NUM_ATOMS;
            unsigned int offset2 = y + tgx + (x/TILE_SIZE)*PADDED_NUM_ATOMS;
#else
            unsigned int offset1 = x + tgx + warp*PADDED_NUM_ATOMS;
            unsigned int offset2 = y + tgx + warp*PADDED_NUM_ATOMS;
#endif
            forceBuffers[offset1].xyz += force.xyz;
            forceBuffers[offset2].xyz += local_force[get_local_id(0)].xyz;
            STORE_DERIVATIVES_1
            STORE_DERIVATIVES_2
            lasty = y;
        }
        pos++;
    }
    energyBuffer[get_global_id(0)] += energy;
}