AmoebaSASAForce.cpp 3.29 KB
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/* -------------------------------------------------------------------------- *
 *                                   OpenMM                                   *
 * -------------------------------------------------------------------------- *
 * This is part of the OpenMM molecular simulation toolkit originating from   *
 * Simbios, the NIH National Center for Physics-Based Simulation of           *
 * Biological Structures at Stanford, funded under the NIH Roadmap for        *
 * Medical Research, grant U54 GM072970. See https://simtk.org.               *
 *                                                                            *
 * Portions copyright (c) 2008-2009 Stanford University and the Authors.      *
 * Authors: Peter Eastman                                                     *
 * Contributors:                                                              *
 *                                                                            *
 * Permission is hereby granted, free of charge, to any person obtaining a    *
 * copy of this software and associated documentation files (the "Software"), *
 * to deal in the Software without restriction, including without limitation  *
 * the rights to use, copy, modify, merge, publish, distribute, sublicense,   *
 * and/or sell copies of the Software, and to permit persons to whom the      *
 * Software is furnished to do so, subject to the following conditions:       *
 *                                                                            *
 * The above copyright notice and this permission notice shall be included in *
 * all copies or substantial portions of the Software.                        *
 *                                                                            *
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,   *
 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL    *
 * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,    *
 * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR      *
 * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE  *
 * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
 * -------------------------------------------------------------------------- */

#include "openmm/Force.h"
#include "openmm/OpenMMException.h"
#include "AmoebaSASAForce.h"
#include "internal/AmoebaSASAForceImpl.h"

using namespace OpenMM;

AmoebaSASAForce::AmoebaSASAForce() : probeRadius(0.14) {
}

int AmoebaSASAForce::addParticle( double radius, double weight) {
    particles.push_back(ParticleInfo(radius, weight));
    return particles.size()-1;
}

void AmoebaSASAForce::getParticleParameters(int index, double& radius, double& weight) const {
    radius = particles[index].radius;
    weight = particles[index].weight;
}

void AmoebaSASAForce::setParticleParameters(int index, double radius, double weight) {
    particles[index].radius = radius;
    particles[index].weight = weight;
}

double AmoebaSASAForce::getProbeRadius() const {
    return probeRadius;
}

void AmoebaSASAForce::setProbeRadius(double distance) {
    probeRadius = distance;
}

ForceImpl* AmoebaSASAForce::createImpl() {
    return new AmoebaSASAForceImpl(*this);
}