README.md

## OpenMM Examples

This directory contains various simple examples demonstrating the use of the
OpenMM Python and C++ APIs.

### Python API examples

The examples in `python-examples` demonstrate how to get a simple simulation up
and running  using the OpenMM Python API application layer.  The way of using
OpenMM illustrated here is primarily geared towards running biomolecular
simulations, but can be used for any kind of simulation that is to be set up by
reading from:
- Amber format files (see `python-examples/simulateAmber.py`)
- CHARMM format files (see `python-examples/simulateCharmm.py`)
- GROMACS format files (see `python-examples/simulateGromacs.py`)
- PDB (Protein Data Bank) files (to be used with OpenMM-compatible force fields; see `python-examples/simulatePdb.py`)

### C++ API examples

The examples in `cpp-examples` demonstrate the use of OpenMM's C++ API, and also
show how to use its C and Fortran bindings.  For more information, see
[the README file](cpp-examples/README.md) in this subdirectory.

### Extras

You can also find:
- [Extra utility scripts](extras/README.md) in `extras`
- A suite of benchmarks for OpenMM in `Benchmarks`