ReferencePairIxn.h

/* Portions copyright (c) 2006 Stanford University and Simbios.
 * Contributors: Pande Group
 *
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 * a copy of this software and associated documentation files (the
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 * permit persons to whom the Software is furnished to do so, subject
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 * The above copyright notice and this permission notice shall be included
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#ifndef __ReferencePairIxn_H__
#define __ReferencePairIxn_H__

#include "openmm/Vec3.h"
#include "openmm/internal/windowsExport.h"
#include <vector>

namespace OpenMM {

class OPENMM_EXPORT ReferencePairIxn {

   private:

   public:

      /**---------------------------------------------------------------------------------------
      
         Constructor
      
         --------------------------------------------------------------------------------------- */

       ReferencePairIxn();

      /**---------------------------------------------------------------------------------------
      
         Destructor
      
         --------------------------------------------------------------------------------------- */

       ~ReferencePairIxn();

      /**---------------------------------------------------------------------------------------
      
         Calculate pair ixn
      
         @param numberOfAtoms    number of atoms
         @param atomCoordinates  atom coordinates
         @param atomParameters   atom parameters (charges, c6, c12, ...)     atomParameters[atomIndex][paramterIndex]
         @param exclusions       atom exclusion indices                      exclusions[atomIndex][atomToExcludeIndex]
         @param fixedParameters  non-atom parameters
         @param forces           force array (forces added)
         @param energyByAtom     atom energy
         @param totalEnergy      total energy
            
         --------------------------------------------------------------------------------------- */
          
      virtual void calculatePairIxn(int numberOfAtoms, std::vector<OpenMM::Vec3>& atomCoordinates,
                            double** atomParameters, int** exclusions,
                            double* fixedParameters, std::vector<OpenMM::Vec3>& forces,
                            double* energyByAtom, double* totalEnergy) const = 0;
      
};

} // namespace OpenMM

#endif // __ReferencePairIxn_H__