GitLab

* Add Eigen library.

* Working for simple test.

* Apply changes to config params.

* Handle nan data.

* Update docs.

* Add test.

* Only load raw data if boosting=gbdt_linear

* Remove unneeded code.

* Minor updates.

* Update to work with sk-learn interface.

* Update to work with chunked datasets.

* Throw error if we try to create a Booster with an already-constructed dataset having incompatible parameters.

* Save raw data in binary dataset file.

* Update docs and fix parameter checking.

* Fix dataset loading.

* Add test for regularization.

* Fix bugs when saving and loading tree.

* Add test for load/save linear model.

* Remove unneeded code.

* Fix case where not enough leaf data for linear model.

* Simplify code.

* Speed up code.

* Speed up code.

* Simplify code.

* Speed up code.

* Fix bugs.

* Working version.

* Store feature data column-wise (not fully working yet).

* Fix bugs.

* Speed up.

* Speed up.

* Remove unneeded code.

* Small speedup.

* Speed up.

* Minor updates.

* Remove unneeded code.

* Fix bug.

* Fix bug.

* Speed up.

* Speed up.

* Simplify code.

* Remove unneeded code.

* Fix bug, add more tests.

* Fix bug and add test.

* Only store numerical features

* Fix bug and speed up using templates.

* Speed up prediction.

* Fix bug with regularisation

* Visual studio files.

* Working version

* Only check nans if necessary

* Store coeff matrix as an array.

* Align cache lines

* Align cache lines

* Preallocation coefficient calculation matrices

* Small speedups

* Small speedup

* Reverse cache alignment changes

* Change to dynamic schedule

* Update docs.

* Refactor so that linear tree learner is not a separate class.

* Add refit capability.

* Speed up

* Small speedups.

* Speed up add prediction to score.

* Fix bug

* Fix bug and speed up.

* Speed up dataload.

* Speed up dataload

* Use vectors instead of pointers

* Fix bug

* Add OMP exception handling.

* Change return type of LGBM_BoosterGetLinear to bool

* Change return type of LGBM_BoosterGetLinear back to int, only parameter type needed to change

* Remove unused internal_parent_ property of tree

* Remove unused parameter to CreateTreeLearner

* Remove reference to LinearTreeLearner

* Minor style issues

* Remove unneeded check

* Reverse temporary testing change

* Fix Visual Studio project files

* Restore LightGBM.vcxproj.filters

* Speed up

* Speed up

* Simplify code

* Update docs

* Simplify code

* Initialise storage space for max num threads

* Move Eigen to include directory and delete unused files

* Remove old files.

* Fix so it compiles with mingw

* Fix gpu tree learner

* Change AddPredictionToScore back to const

* Fix python lint error

* Fix C++ lint errors

* Change eigen to a submodule

* Update comment

* Add the eigen folder

* Try to fix build issues with eigen

* Remove eigen files

* Add eigen as submodule

* Fix include paths

* Exclude eigen files from Python linter

* Ignore eigen folders for pydocstyle

* Fix C++ linting errors

* Fix docs

* Fix docs

* Exclude eigen directories from doxygen

* Update manifest to include eigen

* Update build_r to include eigen files

* Fix compiler warnings

* Store raw feature data as float

* Use float for calculating linear coefficients

* Remove eigen directory from GLOB

* Don't compile linear model code when building R package

* Fix doxygen issue

* Fix lint issue

* Fix lint issue

* Remove uneeded code

* Restore delected lines

* Restore delected lines

* Change return type of has_raw to bool

* Update docs

* Rename some variables and functions for readability

* Make tree_learner parameter const in AddScore

* Fix style issues

* Pass vectors as const reference when setting tree properties

* Make temporary storage of serial_tree_learner mutable so we can make the object's methods const

* Remove get_raw_size, use num_numeric_features instead

* Fix typo

* Make contains_nan_ and any_nan_ properties immutable again

* Remove data_has_nan_ property of tree

* Remove temporary test code

* Make linear_tree a dataset param

* Fix lint error

* Make LinearTreeLearner a separate class

* Fix lint errors

* Fix lint error

* Add linear_tree_learner.o

* Simulate omp_get_max_threads if openmp is not available

* Update PushOneData to also store raw data.

* Cast size to int

* Fix bug in ReshapeRaw

* Speed up code with multithreading

* Use OMP_NUM_THREADS

* Speed up with multithreading

* Update to use ArrayToString

* Fix tests

* Fix test

* Fix bug introduced in merge

* Minor updates

* Update docs

* [docs] fix R documentation builds (fixes #3655)

* use RTD config

* Update setup.py

* Update .appveyor.yml

* Update .travis.yml

* Update .vsts-ci.yml

* Update __init__.py

* Update test.sh

* Update test_windows.ps1

* Update advanced_example.py

* Update requirements_base.txt

* Update conf.py

* Update conf.py

* Update test_engine.py

* Update utils.py

* Update dockerfile-r

* Update README.md

* Update dockerfile.gpu

* Update test_consistency.py

* Update basic.py

* Update compat.py

* Update engine.py

* Update sklearn.py

* Update sklearn.py

* Update callback.py

* Update setup.py

* Update __init__.py

* Update plotting.py

* Update sklearn.py

* Update engine.py

* Update compat.py

* Update callback.py

* Update basic.py

* Update compat.py

* Update basic.py

* Update basic.py

* Update compat.py

* Update compat.py

* Update plotting.py

* Update engine.py

* Update basic.py

* Update sklearn.py

* Update compat.py

* Update engine.py

* Update engine.py

* Update callback.py

* Update basic.py

* Update basic.py

* Update basic.py

* Update basic.py

* Update basic.py

* Update sklearn.py

* Update sklearn.py

* Update plotting.py

* Update sklearn.py

* Update compat.py

* Update compat.py

* Update engine.py

* Update plotting.py

* Update sklearn.py

* Update basic.py

* Update basic.py

* Update basic.py

* Update basic.py

* Update compat.py

* Update compat.py

* Update compat.py

* Update engine.py

* Update basic.py

* Update compat.py

* Update basic.py

* Update basic.py

* Update basic.py

* Update compat.py

* Update compat.py

* Update basic.py

* Update basic.py

* Update .vsts-ci.yml

* Update .vsts-ci.yml

* Update conf.py

* Revert "Update dockerfile-r"

This reverts commit 4ff6ffc7e3eeda24cc6a59a3bb0c973f02d9d71c.

* [R-package] [docs] fix broken plots in pkgdown site (fixes #3276)

* upgrade CMake

* Move all examples to dontrun

* update docs

* fix nested dontrun

* remove :: in examples

* run_dontrun in pkgdown
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [R-package] [docs] replace build_r_site.R with pkgdown::build_site()

* fix paths

* fix continuation

* new_process arg

* [R-package] [docs] remove devtools dependency for docs builds

* linting

* updating docs conda env

* empty roxygenize()

* env for R libraries

* get logs

* remove comment

* added pkgdown URLs

* more paths

* fix incorrect YAML keys

* update DESCRIPTION URL link

* more URL changes

* revert DESCRIPTION changes

* remove ca-certificates

* empty commit

* Update docs/conf.py
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* empty commit

* remove outdated line in build_r.R
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [R-package] fix R examples and lgb.plot.interpretation

* remove space in gitignore

* try data.table from conda-forge

* update FAQ
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* fix RTD builds

* more pins

* hotfix

* removed unnecessary pinning

* added R-package docs generation routines

* change theme to be more consistent with sphinx_rtd_theme on main site in terms of color scheme

* placed man folder with old Rd files back

* specify full path to conda and make script more readable by one line - one pkg

* removed commented lines from build_r_site script

* made one line - one argument in build_reference() call

* pin R package versions

* fixed conflict

* limit number of files to scan for autosummary generation

* reorganize conf.py

* 🎨 `sphinx.ext.autosummary` for generating Python-API summaries

Add `docs/.gitignore` to not track autosummary stubs
Add `sphinx.ext.autosummary` in `docs/conf.py`
  Add 'members' and 'inherited-members' as default parameters
  Add 'autosummary = True' for setting output with `:toctree:`
Add `.. autosummary::` tags to replace `.. autoclass::`

Previously the `Python-API.rst` dumped all of the Python API onto
a single page.

This replaces the Python-API documentation with an index listing
all modules, and paginates all functions and classes onto
separate pages.

* ✏️ Corrections following feedback

Drop `docs/.gitignore` to use the general `.gitignore`
Add `show-inheritance` to `autodoc_default_flags` in `docs/conf.py`
Fix `both` to `class` in `autoclass_content` in `docs/conf.py`

* ✏️ Replacing deprecated Sphinx parameter

Fix deprecated `autodoc_default_flags` to `autodoc_default_options`

* ✏️ Adding `autodoc_default_flags` in to support early Sphinx versions

Add `autodoc_default_flags` with parameters from
  `autodoc_default_options`

* use file to install deps for docs

* added C_API docs

* use breathe without exhale

* added missed params descriptions and make Doxygen fail for warnings

* escape char hotfix

* ignore unknown directive for rstcheck

* better handle env variable

* hotfix for 'Unknown directive type' error with C_API=NO

* Update .gitignore

* fixed pylint

* use already defined constants in conf.py

* do not suppress Doxygen's output

* addressed review comments

* removed unneeded import

* Small aesthetic improvements to RTD docs

* fixed markdown table in Development-Guide

* removed unnecessary blank line in conf.py

* added docstring style test and fixed errors in existing docstrings

* hotfix

* hotfix

* fix grammar

* hotfix

* run pytest for docs folder too

* fixed pylint error and some minor style issues

* added definition of LightGBM to ReadTheDocs main page

* bold LightGBM

* Rename rst_links_fix.js to script.js

* fix js name in config

* delegated not showing hidden items to the rtd_theme

* refactored docs

* fixed docs building at Python 2.x

* updated docs building guide

* get back Python 3 at Travis

* test commit for OSX

* be more precise with python version inpylint task

* turned warnings into errors

* removed linkchecker validation from osx

* removed warning about not included into any toctree

* docs config cleanup

* refined deprecation warnings mechanism

* refine docs mock mechanism

* be more precise with python version in check-docs task

* redused the number of code lines

* refined venv deployment

* rollback python version in check-docs task

* revert 'refine docs mock mechanism'. autodoc_mock_imports seems to be not working

* added targets for big images

* rollback to default python version in check-docs task

* break long lines for mobile view

* replaced pip with conda where it's possible

* fixed typos and hotfixes

* converted gcc-tips.Rmd; added ref to gcc-tips

* renamed files

* renamed Advanced-Topics

* renamed README

* renamed Parameters-Tuning

* renamed FAQ

* fixed refs to FAQ

* fixed undecodable source characters

* renamed Features

* renamed Quick-Start

* fixed undecodable source characters in Features

* renamed Python-Intro

* renamed GPU-Tutorial

* renamed GPU-Windows

* fixed markdown

* fixed undecodable source characters in GPU-Windows

* renamed Parameters

* fixed markdown

* removed recommonmark dependence

* hotfixes

* added anchors to links

* fixed 404

* fixed typos

* added more anchors

* removed sphinxcontrib-napoleon dependence

* removed outdated line in Travis config

* fixed max-width of the ReadTheDocs theme

* added horizontal align to images

* fixed Python-API references

* moved Features section to ReadTheDocs

* fixed index of ReadTheDocs

* moved Experiments section to ReadTheDocs

* fixed capital letter

* fixed citing

* moved Parallel Learning section to ReadTheDocs

* fixed markdown

* fixed Python-API

* fixed link to Quick-Start

* fixed gpu docker README

* moved Installation Guide from wiki to ReadTheDocs

* removed references to wiki

* fixed capital letters in headings

* hotfixes

* fixed non-Unicode symbols and reference to Python API

* fixed citing references

* fixed links in .md files

* fixed links in .rst files

* store images locally in the repo

* fixed missed word

* fixed indent in Experiments.rst

* fixed 'Duplicate implicit target name' message which is successfully
resolved by adding anchors

* less verbose

* prevented maito: ref creation

* fixed indents

* fixed 404

* fixed 403

* fixed 301

* fixed fake anchors

* fixed file extentions

* fixed Sphinx warnings

* added StrikerRUS profile link to FAQ

* added henry0312 profile link to FAQ

http://www.sphinx-doc.org/en/stable/ext/autodoc.html#confval-autoclass_content

If scikit-learn isn't installed (and Read the Docs doesn't have it),
LGBMDeprecated aren't created and can't be imported.

* docs: move files into general

* docs: initial commit for Read the Docs

http://docs.readthedocs.io/en/latest/getting_started.html

just running `sphinx-quickstart`

* docs: update conf.py

* docs: add requirements.txt

* docs: add README.md

* fix tests

* docs: put original docs back