GitLab

* [python-package][dask] handle failures parsing work host names

* add tests

* revert local testing changes

* unify values of `best_iteration` for sklearn and standard APIs

* update Dask test

* add C API function that returns all param names with aliases

* add C API function that returns all param names with aliases

* add R code

* test R code

* remove debug CI

* fix R lint

* refactor

* run CI

* fix R

* fix

* revert CI checks

* revert changes in docs

* Try to make function `const`
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* add `const` in cpp file

* address review comments and sync with `master`
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* in predict(), respect params set via `set_params()` after fit()

* continue

* add test

* fix return name

* hotfix

* simplify

* fix argument types in custom eval function for Dask estimators

* revert changes to docstrings

* fix argument names in Dask test

* Update test_plotting.py

* Update dask.py

* Update sklearn.py

* Update test_sklearn.py

* Update basic.py

* Update engine.py

* Update test_engine.py

* Update basic.py

* Update basic.py

* Update engine.py

* add customized parser support

* fix typo of parser_config_file description

* make delimiter as parameter of JoinedLines

* initial changes

* initial version

* better handling of cases

* warn only with positive threshold

* remove early_stopping_threshold from high-level functions

* remove remaining early_stopping_threshold

* update test to use callback

* better handling of cases

* rename threshold to min_delta

enhance parameter description

update tests

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* reduce num_boost_round in tests

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* trigger ci
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Nikita Titov <nekit94-12@hotmail.com>

* respect objective aliases

* Update test_sklearn.py

* revert removal of blank lines

* add argument name which is being overwritten in warning message

* issue fix #4601

* fix issue 4601 it2

* add tests for issue 4601

* fix warning

* fix warning

* add new line at end

* remove last line at end

* fix lint warning

* address comments

* address comments

* address comments

* fix address

* address comments

* revert seed

* fix recursive force split issue

* fix build error

* fix lint warning

[ci][tests][python] remove assertion for `filename` attribute that is no longer true with new version of graphviz (#4778)

* add n_estimators_ and n_iter_ post-fit attributes

* address review comments

Co-authored-by: Nikita Titov <nekit94-12@hotmail.com>

[python-package] Support 2d collections as input for `init_score` in multiclass classification task (#4150)

* initial implementation of init_score for multiclass classification

* check for 1d or 2d collection in init_score

* remove dataset import

* initial comments

* update dask test and docstrings

* update docstrings

* move logic to set_field. reshape back on get_field

* add type hints and update docstrings for dask. fix Dataset.set_field

* revert wrong docstrings and type hints

* add extra comma for consistency

* prefix private functions with underscore

add type hints to new functions

make commas consistent in dask and basic

* add missing spaces after type hint

* remove shape condition for dataframe in is_2d_collection
Co-authored-by: Nikita Titov <nekit94-12@hotmail.com>

* Update __init__.py

* Update Python-API.rst

* Update engine.py

* Update test_utilities.py

* Update sklearn.py

* Update callback.py

* Update callback.py

* Update callback.py

* deprecate advanced args of `train()` and `cv()`

* update Dask test

* improve deducing

* address review comments

Co-authored-by: Nikita Titov <nekit94-12@hotmail.com>

* add parameter object_hook to function dump_model (python API)

* eol

* fix syntax

* lint

* better documentation

* Update python-package/lightgbm/basic.py
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: xavier dupré <xavier.dupre@gmail.com>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* reduce number of collisions tests

* measure tests execution time

* measure tests execution time in bdist task

* remove durations in bdist task

* find all needed ports in each worker at once

* lint

* better naming

* use _HostWorkers in test

* [python] support Dataset.get_data for Sequence input.

* Tweaks according to review comments.

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* Add test cases.

* fix import order in test_basic.py
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* allow to pass some params as pathlib.Path objects

* fix lint

* improve indentation

[dask] Make output of feature contribution predictions for sparse matrices match those from sklearn estimators (fixes #3881) (#4378)

* test_classifier working

* adding tests

* docs

* tests

* revert unnecessary changes in tests

* test output type

* linting

* linting

* use from_delayed() instead

* docstring pycodestyle is happy with

* isort

* put pytest skips back

* respect sparse return type

* fix doc

* remove unnecessary dask_array_concatenate()

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* update predict_proba() docstring

* remove unnecessary np.array()

* Update python-package/lightgbm/dask.py
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* fix assertion

* fix test use of len()

* restore np.array() in tests

* use np.asarray() instead

* use toarray()

* remove empty functions in compat
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* Update test_sklearn.py

* Update test_basic.py

* Update dask.py

* Update basic.py

* Update basic.py

* Update basic.py

* Update basic.py

* Update callback.py

* [python-package] convert string concatenation to f-strings in test_engine.py (fixes #4136)

* Update tests/python_package_test/test_engine.py
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* revert get_workflow_status changes
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [python-package] create Dataset from sampled data.

* [python-package] create Dataset from List[Sequence].

1. Use random access for data sampling
2. Support read data from multiple input files
3. Read data in batch so no need to hold all data in memory

* [python-package] example: create Dataset from multiple HDF5 file.

* fix: revert is_class implementation for seq

* fix: unwanted memory view reference for seq

* fix: seq is_class accepts sklearn matrices

* fix: requirements for example

* fix: pycode

* feat: print static code linting stage

* fix: linting: avoid shell str regex conversion

* code style: doc style

* code style: isort

* fix ci dependency: h5py on windows

* [py] remove rm files in test seq
https://github.com/microsoft/LightGBM/pull/4089#discussion_r612929623

* docs(python): init_from_sample summary

https://github.com/microsoft/LightGBM/pull/4089#discussion_r612903389



* remove dataset dump sample data debugging code.

* remove typo fix.

Create separate PR for this.

* fix typo in src/c_api.cpp
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* style(linting): py3 type hint for seq

* test(basic): os.path style path handling

* Revert "feat: print static code linting stage"

This reverts commit 10bd79f7f8258bea8e61c3abb8c9c7e4456a916d.

* feat(python): sequence on validation set

* minor(python): comment

* minor(python): test option hint

* style(python): fix code linting

* style(python): add pydoc for ref_dataset

* doc(python): sequence
Co-authored-by: shiyu1994 <shiyu_k1994@qq.com>

* revert(python): sequence class abc

* chore(python): remove rm_files

* Remove useless static_assert.

* refactor: test_basic test for sequence.

* fix lint complaint.

* remove dataset._dump_text in sequence test.

* Fix reverting typo fix.

* Apply suggestions from code review
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* Fix type hint, code and doc style.

* fix failing test_basic.

* Remove TODO about keep constant in sync with cpp.

* Install h5py only when running python-examples.

* Fix lint complaint.

* Apply suggestions from code review
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* Doc fixes, remove unused params_str in __init_from_seqs.

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* Remove unnecessary conda install in windows ci script.

* Keep param as example in dataset_from_multi_hdf5.py

* Add _get_sample_count function to remove code duplication.

* Use batch_size parameter in generate_hdf.

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* Fix after applying suggestions.

* Fix test, check idx is instance of numbers.Integral.

* Update python-package/lightgbm/basic.py
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* Expose Sequence class in Python-API doc.

* Handle Sequence object not having batch_size.

* Fix isort lint complaint.

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* Update docstring to mention Sequence as data input.

* Remove get_one_line in test_basic.py

* Make Sequence an abstract class.

* Reduce number of tests for test_sequence.

* Add c_api: LGBM_SampleCount, fix potential bug in LGBMSampleIndices.

* empty commit to trigger ci

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* Rename to LGBM_GetSampleCount, change LGBM_SampleIndices out_len to int32_t.

Also rename total_nrow to num_total_row in c_api.h for consistency.

* Doc about Sequence in docs/Python-Intro.rst.

* Fix: basic.py change LGBM_SampleIndices out_len to int32.

* Add create_valid test case with Dataset from Sequence.

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* Apply suggestions from code review
Co-authored-by: shiyu1994 <shiyu_k1994@qq.com>

* Remove no longer used DEFAULT_BIN_CONSTRUCT_SAMPLE_CNT.

* Update python-package/lightgbm/basic.py
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Willian Zhang <willian@willian.email>
Co-authored-by: Willian Z <Willian@Willian-Zhang.com>
Co-authored-by: James Lamb <jaylamb20@gmail.com>
Co-authored-by: shiyu1994 <shiyu_k1994@qq.com>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>