GitLab

* [R-package] add deprecation warnings on uses of '...' in predict()

* add importFrom(utils, modifyList) in NAMESPACE

[docs] Clarify the fact that predict() on a file does not support saved Datasets (fixes #4034) (#4545)

* documentation changes

* add list of supported formats to error message

* add unit tests

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* update per review comments

* make references consistent
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [R-package] fix OpenMP checking on macOS

* adding clang flags back

* fix detection on Mac

* remove CC since it is now unused

* use flags specific to C++11

* regenerate configure

Co-authored-by: Nikita Titov <nekit94-12@hotmail.com>

* [R-package] pass compiler flags to checks in configure

* leave OpenMP check alone

* prefer C++11 flags

* install Matrix in valgrind tests

* one less AC_LANG() call
Co-authored-by: Nikita Titov <nekit94-12@hotmail.com>

Co-authored-by: Nikita Titov <nekit94-12@hotmail.com>

* [R-package] use C++ compiler for pre-compile checks on Windows

* install Matrix in valgrind test

* Add {Matrix} in more places in CI and docs

* use CXX11

* use flags specific to C++11

* missing backtick
Co-authored-by: Nikita Titov <nekit94-12@hotmail.com>

* [R-package] fix protection stack imbalance and unprotected objects issues

* [R-package] fix minor linting issues

* [ci][R-package] change timeout-minutes in valgrind test

* [R-package] remove extra space
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* [R-package] remove counter for number of protected objects

* Update .github/workflows/r_valgrind.yml
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* add authors in R-package description

* Update R-package/DESCRIPTION
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* [R-package] remove unnecessary comments

* Update R-package/R/lgb.Booster.R

* [R-package] consolidate duplicate lists of Dataset info keys

* remove extra parentheses

* [R-package] add unit tests on monotone constraints

* testing without skip()

* put skip() back

* make tests consistent with Python

* Update R-package/tests/testthat/test_basic.R

* more changes for consistency with Python tests

* [R-package] move more finalizer logic intoo C++ side

* add C finalizers

* use gc()

* put skip() back

* Update R-package/tests/testthat/test_lgb.Booster.R
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [R-package] avoid unnecessary computation of std deviations in lgb.cv()

* use expect_equal()

* [R-package] factor out lgb.check.r6.class()

* Predictor

* fixed weighted gamma obj

* added unit tests

* fixing linter errors

* another linter

* set seed

* fix linter (integer seed)

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* Update lightgbm_R.cpp

* fix typos

* started converting handles

* more changes

* sort of working for Dataset

* yay all the tests are passing for Dataset handle changes

* working for other handle types

* remove debugging logging

* remove unnecessary spaces

* fix null logic

* more NULL

* updates

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* consolidate steps
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [R-package] move creation of character vectors in some methods to C++ side

* convert LGBM_BoosterGetEvalNames_R

* convert LGBM_BoosterDumpModel_R and LGBM_BoosterSaveModelToString_R

* remove debugging code

* update docs

* remove comment

* add handling for larger model strings

* handle large strings in feature and eval names

* got long feature names working

* more fixes

* linting

* resize

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* stricter test
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [R-package] update docs on C++ interface

* Update R-package/src/lightgbm_R.h
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* Update R-package/src/lightgbm_R.h
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* add missing start_iteration doc
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* converted LGBM_BoosterSaveModel_R

* switch all other non-params cases

* handle params

* real pointer for matrix

* remove R_REAL_PTR

* remove R_INT_PTR

* add test

* [R-package] replace R_AS_INT with R built-in

* update header

* more changes

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [R-package] move some functions over to SEXP objects

* clarify comment

* remove paste0()

* fix registration table

* fix cmake builds

* [R-package] prevent symbol lookup conflicts

* add unit tests

* only run test on Windows

* move to .Call() calls

* fix references

* testing registration for CMake builds

* revert NAMESPACE changes

* revert testing changes