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* construct dataset earlier in lgb.train and lgb.cv

* Update R-package/tests/testthat/test_dataset.R
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* Update R-package/R/lgb.cv.R
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* Update R-package/R/lgb.train.R
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* Update R-package/tests/testthat/test_dataset.R
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* fixing lint issues

* styling updates

* fix failing test
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* [R-package] Updated lgb.train.R with keyword arguments

* [R-package] Updated lgb.train.R with keyword arguments

* [R-package] Updated lgb.train.R with keyword arguments

* [R-package] update DESCRIPTION per CRAN comments

* newlines

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* more fixes

* update Rbuildignore

* more changes

* more changes per CRAN response

* add email

* run examples in CI

* add newest CRAN response

* add Solaris patch

* update patch

* another attempt at ifaddrs patch

* fix unnecessary comment

* update configure

* comments

* bump version

* tabs

* fix address alignment, required by cran (#3415)

* fix dataset binary file alignment

* many fixes

* fix warnings

* fix bug

* Update file_io.cpp

* Update file_io.cpp

* simplify code

* Apply suggestions from code review

* general

* remove unneeded alignment

* Update file_io.h

* int32 to byte8 alignment

* Apply suggestions from code review

* Apply suggestions from code review

* [R-package] add new copyright holder in DESCRIPTION (#3409)

* [R-package] add new copyright holder in DESCRIPTION

* fix role

* fixing conflicts

* [R-package] add new copyright holder in DESCRIPTION (#3409)

* [R-package] add new copyright holder in DESCRIPTION

* fix role

* trying to fix conflicts

* more fixes

* this will work

* update cran-comments

* simplify solaris, add more testing docs

* stuff

* remove rchck docs

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* remove extra use of cat()

* change solaris check

* update docs

* remove testing code

* fix warning about cleanup not having execute permissions

* fix cmake builds

* remove blank line
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Guolin Ke <guolin.ke@outlook.com>

[R-package] Fix incorrect num_iterations, early_stopping_round in saved models (fixes #2208, #2468) (#3368)

* params to string

* add tests

* more  tests

* stop skipping training continuation test (fixes #2468)

* remove unnecessary code

* [R-package] remove unused code and comments

* put check back

* other typos

* [R-package] started implementing first_metric_only

* trying stuff

* more changes

* fixed handling of multiple metrics

* fixed tests

* remove duplicate tests

* get training tests

* fixes for lgb.cv()

* fixes for lgb.cv()

* fix linting

* Move all examples to dontrun

* update docs

* fix nested dontrun

* remove :: in examples

* run_dontrun in pkgdown
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [R-package] fix early_stopping_round <= 0

* linting

* Add interaction constraints functionality.

* Minor fixes.

* Minor fixes.

* Change lambda to function.

* Fix gpu bug, remove extra blank lines.

* Fix gpu bug.

* Fix style issues.

* Try to fix segfault on MACOS.

* Fix bug.

* Fix bug.

* Fix bugs.

* Change parameter format for R.

* Fix R style issues.

* Change string formatting code.

* Change docs to say R package not supported.

* Refactor check_interaction_constraints into separate function, add validation.

* Fix error messages.

* Add tests.

* Update docs.

* Fix tests, minor refactoring.

* Fix style issues.

* Fix R style issue.

* Remove old code.

* Fix existing test and add new one.

* Fix R lint error.

* Add interaction constraints functionality.

* Minor fixes.

* Minor fixes.

* Change lambda to function.

* Fix gpu bug, remove extra blank lines.

* Fix gpu bug.

* Fix style issues.

* Try to fix segfault on MACOS.

* Fix bug.

* Fix bug.

* Fix bugs.

* Change parameter format for R.

* Fix R style issues.

* Change string formatting code.

* Change docs to say R package not supported.

* Remove R functionality, moving to separate PR.

* Keep track of branch features in tree object.

* Only track branch features when feature interactions are enabled.

* Fix lint error.

* Update docs and simplify tests.

[R-package] fixed best_iter and best_score when training data is passed (fixes #2295, #2525) (#2961)

* [R-package] fixed best_iter and best_score when early_stopping is not used (fixes #2295)

* fixed tests

* [R-package] [docs] Simplified examles to cut example run time (fixes #2988)

* updated learning rates

* [R-package] [ci] added more linters

* Update R-package/tests/testthat/test_parameters.R
Co-Authored-By: Nikita Titov <nekit94-08@mail.ru>

* added cbind() to undesirable_function_linter

* fixed linting

* Update .ci/lint_r_code.R

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [R-package] made roxygen2 tags explicit and cleaned up documentation

* Apply suggestions from code review
Co-Authored-By: Nikita Titov <nekit94-08@mail.ru>

* Apply suggestions from code review
Co-Authored-By: Nikita Titov <nekit94-08@mail.ru>

* Update R-package/man/lightgbm.Rd
Co-Authored-By: Nikita Titov <nekit94-08@mail.ru>

* [R-package] moved @name to the top of roxygen blocks and removed some inaccurate information in documentation on parameters
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* Added more linters on R code

* started working on implicit integers

* finished style changes to handle implicit integers

* regenned documentation and added concatenation linter

* changed channel for r-lintr

* try building stringi before lintr

* trying to get libicui18n

* trying another thing

* trying conda-forge again

* added re-install of stringi

* uncommented other stages

* Update .ci/test.sh
Co-Authored-By: Nikita Titov <nekit94-08@mail.ru>

* removed apt update and changed lintr version floor

* get lintr from CRAN

* R needs to come before C++ linting

* testing lintr install from CRAN

* trying one more thing

* more verbose

* order might matter

* removed commented code

* cleaned up linting block in test.sh

* grouped conda install calls and fixed a few integer array things

* added R-package docs generation routines

* change theme to be more consistent with sphinx_rtd_theme on main site in terms of color scheme

* placed man folder with old Rd files back

* specify full path to conda and make script more readable by one line - one pkg

* removed commented lines from build_r_site script

* made one line - one argument in build_reference() call

* pin R package versions

* fixed conflict

* Callback for NA handling

* lgb.Booster default score => NA

* lgb.cv default best score => NA

* Fix back callback

* lgb.train with booster check at the end

manual tests done: 
* With early stopping + with validation set
* With early stopping + without validation set
* Without early stopping + with validation set
* Without early stopping + without validation set

And with multiple metrics / validation sets.

* lgb.cv with booster check at the end

manual tests done: 
* With early stopping + with validation set
* With early stopping + without validation set
* Without early stopping + with validation set
* Without early stopping + without validation set

And with multiple metrics / validation sets.

* add free booster in lgb.cv

* change to reset_data

* [R-package] removed horizontal whitespace (fixes #1642)

* [R-package] fixed missing newline in test file

* Fixed typos in docs

* Fixed inconsistencies in documentation

* Updated strategy for registering routines

* Fixed issues caused by smashing multiple functions into one Rd

* Fixed issues with documentation

* Removed VignetteBuilder and updated Rbuildignore

* Added R build artefacts to gitignore

* Added namespacing on data.table set function. Updated handling of CMakeLists file to get around CRAN check.

* Updated build instructions

* Added R build script

* Removed build_r.sh script and updated R-package install instructions

* bring consistency and clearness into early_stopping_rounds desc, metric desc and implementation

* hotfix

* hotfix

* used NDCG as default metric for lambdarank task

* fixed missed methods at ReadTheDocs and changed default eval_metric

* leaved only unique metrics

* fixed comment

* added new aliases for params

* run helper/parameter_generator.py

* removed useless test

The document of `early_stopping_rounds` says it will check all of
eval_set. But, this is not true. It doesn't check the dataset
specified as the training data.

This change appends an extra phrase "except the training data" to all
of the sentences "If there's more than one, will check all of them" in
documents.

* Fixed misc CRAN issues

* Added additional details to R-package DESCRIPTION

* fixed typos and hotfixes

* converted gcc-tips.Rmd; added ref to gcc-tips

* renamed files

* renamed Advanced-Topics

* renamed README

* renamed Parameters-Tuning

* renamed FAQ

* fixed refs to FAQ

* fixed undecodable source characters

* renamed Features

* renamed Quick-Start

* fixed undecodable source characters in Features

* renamed Python-Intro

* renamed GPU-Tutorial

* renamed GPU-Windows

* fixed markdown

* fixed undecodable source characters in GPU-Windows

* renamed Parameters

* fixed markdown

* removed recommonmark dependence

* hotfixes

* added anchors to links

* fixed 404

* fixed typos

* added more anchors

* removed sphinxcontrib-napoleon dependence

* removed outdated line in Travis config

* fixed max-width of the ReadTheDocs theme

* added horizontal align to images

* minor changes for robustness and efficiency

* fix charcter typo

* don't use lgb.is.* in filter

* revert to cat instead of message; don't use mget

* fix bugs in previous commits

* should be good to go now

* Prepare merging parameters

* Add parameters from params for lgb.train

* Usage of params in lgb.cv for rounds/early stop

* Double bracket (1)

* Double brackets (2)

* Revert "[R-package] Prevent remembering parameters (#796)"

This reverts commit c795e2c8e12e8fe989bde0ab4ee59c2301325814.

* Use model load/unload trick for free-ing up memory

* Missing comma

* Hand copy manual update (1/2)

* Hand copy manual update (2/2)

* Enable simple cloning of dataset

* Add remodel logical to Dataset

* Allow remodeling of data

* Missing comma

* Use name instead of assignment for R6 class

* There should be no need to deep copy ALL objects

* Define environment in examples (xgboost clash)

* Large R code changes