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* speed up multi-val bin subset for bagging

* remove the duplicated codes

* code refine

* some codes refactoring

* move `is_constant_hessian` into `TrainingShareStates`

* refine

* fix bug

* fix bug when num_groups_ < 0

* fix gpu

* fix gpu bagging

* fix gpu bug

* typo

* Update src/treelearner/serial_tree_learner.h

* commit

* fix a bug

* fix bug

* reset to track changes

* refine the auto choose logic

* sort the time stats output

* fix include

* change  multi_val_bin_sparse_threshold

* add cmake

* add _mm_malloc and _mm_free for cross platform

* fix cmake bug

* timer for split

* try to fix cmake

* fix tests

* refactor DataPartition::Split

* fix test

* typo

* formating

* Revert "formating"

This reverts commit 5b8de4f7fb9d975ee23701d276a66d40ee6d4222.

* add document

* [R-package] Added tests on use of force_col_wise and force_row_wise in training (#2719)

* naming

* fix gpu code

* Update include/LightGBM/bin.h
Co-Authored-By: James Lamb <jaylamb20@gmail.com>

* Update src/treelearner/ocl/histogram16.cl

* test: swap compilers for CI

* fix omp

* not avx2

* no aligned for feature histogram

* Revert "refactor DataPartition::Split"

This reverts commit 256e6d9641ade966a1f54da1752e998a1149b6f8.

* slightly refactor data partition

* reduce the memory cost
Co-authored-by: James Lamb <jaylamb20@gmail.com>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* fixed miscellaneous typos in documentation

* fix typo introduced in typo-fixing PR

* fix many cpp lint errors

* indent

* fix bug

* fix more

* fix gpu

* more fixes

* fix a bug when bagging with reset_config

* clean code

* added all necessary includes - fixed build/include_what_you_use error

* fixed the order of includes (build/include_order)

* fix RF's bugs

* fix tests

* rollback num_iterations

* fix a bug and reduce memory costs

* reduce memory cost

* [WIP] refine config

* [wip] ready for the auto code generate

* auto generate config codes

* use with to open file

* fix bug

* fix pylint

* fix bug

* fix pylint

* fix bugs.

* tmp for failed test.

* fix tests.

* added nthreads alias

* added new aliases from new config.h

* fixed duplicated alias

* refactored parameter_generator.py

* added new aliases from config.h and removed remaining old names

* fix bugs & some miss alias

* added aliases

* add more descriptions.

* add comment.

* add code for refit tree

* add implementation.

* update documents.

* clean code

* fix a type

* Revert "python-package: support valid_names in scikit-learn API (#420)"

This reverts commit de39dbcf.

* Revert "faster histogram sum up (#418)"

This reverts commit 98c7c2a3.

* some refactor.

* two stage sum up to reduce sum up error.

* add more two-stage sumup.

* some refactor.

* add alignment.

* change name to aligned_allocator.

* remove some useless sumup.

* fix a warning.

* add -march=native .

* remove the padding of gradients.

* no alignment.

* fix test.

* change KNumSumupGroup to 32768.

* change gcc flags.

* add dummy gpu solver code

* initial GPU code

* fix crash bug

* first working version

* use asynchronous copy

* use a better kernel for root

* parallel read histogram

* sparse features now works, but no acceleration, compute on CPU

* compute sparse feature on CPU simultaneously

* fix big bug; add gpu selection; add kernel selection

* better debugging

* clean up

* add feature scatter

* Add sparse_threshold control

* fix a bug in feature scatter

* clean up debug

* temporarily add OpenCL kernels for k=64,256

* fix up CMakeList and definition USE_GPU

* add OpenCL kernels as string literals

* Add boost.compute as a submodule

* add boost dependency into CMakeList

* fix opencl pragma

* use pinned memory for histogram

* use pinned buffer for gradients and hessians

* better debugging message

* add double precision support on GPU

* fix boost version in CMakeList

* Add a README

* reconstruct GPU initialization code for ResetTrainingData

* move data to GPU in parallel

* fix a bug during feature copy

* update gpu kernels

* update gpu code

* initial port to LightGBM v2

* speedup GPU data loading process

* Add 4-bit bin support to GPU

* re-add sparse_threshold parameter

* remove kMaxNumWorkgroups and allows an unlimited number of features

* add feature mask support for skipping unused features

* enable kernel cache

* use GPU kernels withoug feature masks when all features are used

* REAdme.

* REAdme.

* update README

* fix typos (#349)

* change compile to gcc on Apple as default

* clean vscode related file

* refine api of constructing from sampling data.

* fix bug in the last commit.

* more efficient algorithm to sample k from n.

* fix bug in filter bin

* change to boost from average output.

* fix tests.

* only stop training when all classes are finshed in multi-class.

* limit the max tree output. change hessian in multi-class objective.

* robust tree model loading.

* fix test.

* convert the probabilities to raw score in boost_from_average of classification.

* fix the average label for binary classification.

* Add boost_from_average to docs (#354)

* don't use "ConvertToRawScore" for self-defined objective function.

* boost_from_average seems doesn't work well in binary classification. remove it.

* For a better jump link (#355)

* Update Python-API.md

* for a better jump in page

A space is needed between `#` and the headers content according to Github's markdown format [guideline](https://guides.github.com/features/mastering-markdown/)

After adding the spaces, we can jump to the exact position in page by click the link.

* fixed something mentioned by @wxchan

* Update Python-API.md

* add FitByExistingTree.

* adapt GPU tree learner for FitByExistingTree

* avoid NaN output.

* update boost.compute

* fix typos (#361)

* fix broken links (#359)

* update README

* disable GPU acceleration by default

* fix image url

* cleanup debug macro

* remove old README

* do not save sparse_threshold_ in FeatureGroup

* add details for new GPU settings

* ignore submodule when doing pep8 check

* allocate workspace for at least one thread during builing Feature4

* move sparse_threshold to class Dataset

* remove duplicated code in GPUTreeLearner::Split

* Remove duplicated code in FindBestThresholds and BeforeFindBestSplit

* do not rebuild ordered gradients and hessians for sparse features

* support feature groups in GPUTreeLearner

* Initial parallel learners with GPU support

* add option device, cleanup code

* clean up FindBestThresholds; add some omp parallel

* constant hessian optimization for GPU

* Fix GPUTreeLearner crash when there is zero feature

* use np.testing.assert_almost_equal() to compare lists of floats in tests

* travis for GPU

* reduce the sumup cost of constant hessians.

* fix test.

* fix bug when have weights.

* fix a comment.

* reduce branching.

* RAII for utils, application and c_api(partical)

* raii for class in include folder

* raii for application and boosting

* raii for dataset and dataset loader

* raii for dense bin and parser

* RAII refactor for almost all classes

* RAII for c_api

* clean code

* refine repeated code

* Decouple the "sigmoid" between objective and boosting.

* change std::vector<bool> back to std::vector<char> due to concurrence problem

* slight reduce some memory cost