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* switch to single prediction type argument

* linter

* missing piece of code

* comments

* linter

* fix test

* revert incorrect 'fix'

* fix failing test

* fix test again

* modify recently introduced tests after changes here

* rename prediction types

* rebase

* restore tests for prediction type in params

* Update R-package/tests/testthat/test_Predictor.R
Co-authored-by: James Lamb <jaylamb20@gmail.com>
Co-authored-by: James Lamb <jaylamb20@gmail.com>

[ci] [R-package] Add paste_linter (#5303)

* add predcontrib for sparse inputs

* register newly-added function

* comments

* correct wrong types in test

* forcibly take transpose function from Matrix

* keep row names, test comparison to dense inputs

* workaround for passing test while PR for row names is not merged

* Update R-package/R/lgb.Predictor.R
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* Update R-package/R/lgb.Predictor.R
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* Update R-package/R/lgb.Predictor.R
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* proper handling of integer overflow

* add test for CSR contrib row names

* add more tests for predict(<sparse>, predcontrib=TRUE)

* make linter happy

* linter

* linter

* check error messages for bad input shapes

* fix regex

* hard-coded number of columns in regex for tests
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* fix predict() params

* [R-package] ensure values in params override keyword arguments to predict() (fixes #4670)

* revert accidentally-introduced unrelated test changes

* Update R-package/tests/testthat/test_Predictor.R
Co-authored-by: José Morales <jose.morales@kavak.com>

* Update R-package/tests/testthat/test_Predictor.R
Co-authored-by: José Morales <jose.morales@kavak.com>

* linting

* remove nammes in shap test

* changes to tests
Co-authored-by: José Morales <jose.morales@kavak.com>

* keep row names in prediction output

* fix test

* fix test

* fix test

* more tests for row names

* redo badly solved merge conflict

* comments

* update docs

* missing closing parentheses

* explicitly list assertions in each test

* move assertions back into shared function
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* change prediction default to reshape=TRUE

* remove reshape argument

* comments

* [R-package] reduce verbosity in some unit tests

* simplify

* Update R-package/tests/testthat/test_lgb.plot.interpretation.R

* [R-package] remove support for '...' in lgb.train()

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [R-package] move more finalizer logic intoo C++ side

* add C finalizers

* use gc()

* put skip() back

* Update R-package/tests/testthat/test_lgb.Booster.R
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

simplify start_iteration param for predict in Python and some code cleanup for start_iteration (#3288)

* simplify start_iteration param for predict in Python and some code cleanup for start_iteration

* revert docs changes about the prediction result shape

* [python] add start_iteration to python predict interface (#3058)

* Apply suggestions from code review

* Update lightgbm_R.h

* Apply suggestions from code review

* Apply suggestions from code review

* fix R interface

* update R documentation
Co-authored-by: Guolin Ke <guolin.ke@outlook.com>

* Turn matrix to storage mode "double"

* added "test_Predictor.R" to R tests with check for integer storage mode during prediction

* Explicit integers in test_Preditor to avoid TravisCI failure

* properly aligning comment on storage.mode
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* split double assignment into two lines
Co-authored-by: James Lamb <jaylamb20@gmail.com>