GitLab

* [ci] manually create symlinks to R entrypoints on macOS (fixes #4988)

* exclude non-R CI jobs

* upgrade to R 4.1.2

* get logs for R install

* pin R 4.1.x jobs to macOS-10.15

* update to R 4.1.2 on Windows

* allow for non-latest macOS builds in GHA configuration

* fix prefix check

* fix config check

* more direct check for mac version

* uncomment other CIs

* update R version in CI job names

* Revert "[ci] ignore certificates for kitware apt channel in CUDA jobs (fixes #4646) (#4648)"

This reverts commit 10e0edc4.

* update cuda at CI

* Update .appveyor.yml

* Update .vsts-ci.yml

* Update python_package.yml

* Update setup.py

* Update test.sh

* Update .vsts-ci.yml

* Update .vsts-ci.yml

* Update Installation-Guide.rst

* Update install.libs.R

* Update setup.py

* Update r_package.yml

* Update install.libs.R

* [R-package] [docs] add intro vignette (#3946)

* add 10 test vignettes

* Revert "add 10 test vignettes"

This reverts commit 40fb2e2f1982402798776ee44e4ec82fc4644d3d.

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Michael Mayer <mayermichael79@gmail.com>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [ci] use wch1/r-debug image in Solaris tests

* no git in valgrind tests

* [ci] upgrade actions/checkout to v2.4.0

* re-create GITHUB_WORKSPACE

* dont update cuda

* actually revert cuda

* [R-package] allow use of custom R executable building CRAN package

* Update build-cran-package.sh
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* add jobs mimicking CRAN gcc-ASAN and clang-ASAN

* comment out CI

* fix redirection

* remove unnecessary echo

* Revert "comment out CI"

This reverts commit 899fbb4574b99a8125b28761425e3e821bfdfef1.

* remove redundant env variables and update README

* remove inaccurate comment

* change test title

* Revert "Fix ASAN issues with `std::function` usage (#4673)"

This reverts commit 13ed38ca

.

* Revert "Revert "Fix ASAN issues with `std::function` usage (#4673)""

This reverts commit 24c275ba84f1f182275f74ff4ad2e510bb18f4bd.

* revert unnecessary change in config order

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [ci] bump CUDA version from 11.4.0 to 11.4.2 at CI

* Update cuda.yml

Co-authored-by: Yu Shi <shiyu1994@qq.com>

* [ci] prefer 'apt update' to 'apt-get update' in some R builds

* use --allow-releaseinfo-change

* [R-package] use C++ compiler for pre-compile checks on Windows

* install Matrix in valgrind test

* Add {Matrix} in more places in CI and docs

* use CXX11

* use flags specific to C++11

* missing backtick
Co-authored-by: Nikita Titov <nekit94-12@hotmail.com>

* [ci] move Solaris and valgrind test steps into scripts

* Update .github/workflows/r_solaris.yml
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* relatiev paths
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [ci] add CI job running rchk

* try commenting out more stuff

* ignore R internal error

* pipes

* remove PROTECT()

* try removing testthat

* revert temporary testing changes

* [ci] parallelize R package installs in CI jobs

* build 2

* build 3

* add ncpus in static_analysis

This reverts commit 36454a3b.

* [ci] Add debian-clang-devel CI job for the R package

* [ci] Add debian-clang-devel CI job for the R package

* fixes

* fix test

* update cran-comments

* re-trigger CI

* catch warnings and notes

* fail with only a NOTE

* uncomment CI code

* remove env vars in windows tests

* Update R-package/cran-comments.md
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: StrikerRUS <nekit94-12@hotmail.com>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* use GitHub Actions to re-generate R configure

* Update R-package/README.md
Co-authored-by: James Lamb <jaylamb20@gmail.com>
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* build CRAN R-package on Azure with every commit and attach to releases

* test CI

* fix path

* revert CI test

* bump CUDA version and pull dockers from NVIDIA NGC

* Update cuda.yml

* [ci] add CMake + R 3.6 test back (fixes #3469)

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* Update .ci/test_r_package_windows.ps1

* -Wait and remove rtools40

* empty commit
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* Update r_solaris.yml

* Update run_rhub_solaris_checks.R

* Update run_rhub_solaris_checks.R

* fix lint

* Update r_solaris.yml

* Update run_rhub_solaris_checks.R

* Update run_rhub_solaris_checks.R

* Update run_rhub_solaris_checks.R

* run R CRAN checks on Solaris by optional workflow

* Update triggering_comments.yml

* Update r_solaris.yml

* Update optional_checks.yml

* Update triggering_comments.yml

* Update run_rhub_solaris_checks.R

* Update r_solaris.yml

* Update run_rhub_solaris_checks.R

* Update r_solaris.yml

* simplify code

* fix lint and address review comments

* Update linkchecker.yml

* Update test.sh

* [ci] move link checking to a cron job

* run once to register

* set PYTHON_VERSION

* actually build docs

* uncomment

* remove stuff

* Update docs/.linkcheckerrc

* condense

* remove PR triggers again

* Update .github/workflows/linkchecker.yml

* move TASK

* start supporting Python 3.9

* Update .vsts-ci.yml

* Update .vsts-ci.yml

* Update .appveyor.yml

* Update .vsts-ci.yml

* Update .appveyor.yml

* fixed conflicts

* continue