[ci] [docs] update some docs and CI dependencies (#6346)

.ci/test.sh

@@ -72,10 +72,10 @@ if [[ $TASK == "lint" ]]; then
     cd ${BUILD_DIRECTORY}
     mamba create -q -y -n $CONDA_ENV \
         ${CONDA_PYTHON_REQUIREMENT} \
-        cmakelint \
-        cpplint \
+        'cmakelint>=1.4.2' \
+        'cpplint>=1.6.0' \
         'matplotlib>=3.8.3' \
-        mypy \
+        'mypy>=1.8.0' \
         'pre-commit>=3.6.0' \
         'pyarrow>=14.0' \
         'r-lintr>=3.1'
@@ -98,8 +98,8 @@ if [[ $TASK == "check-docs" ]] || [[ $TASK == "check-links" ]]; then
         -q \
         -y \
         -n $CONDA_ENV \
-            doxygen \
-            'rstcheck>=6.0.0' || exit 1
+            'doxygen>=1.10.0' \
+            'rstcheck>=6.2.0' || exit 1
     source activate $CONDA_ENV
     # check reStructuredText formatting
     cd $BUILD_DIRECTORY/python-package

docs/env.yml

@@ -3,16 +3,16 @@ channels:
   - nodefaults
   - conda-forge
 dependencies:
-  - breathe
-  - python=3.9
-  - r-base=4.1.3
-  - r-data.table=1.14.2
-  - r-jsonlite=1.7.2
-  - r-knitr=1.37
-  - r-markdown
-  - r-matrix=1.4_0
-  - r-pkgdown=1.6.1
-  - r-roxygen2=7.2.1
-  - scikit-learn
-  - sphinx
-  - "sphinx_rtd_theme>=0.5"
+  - breathe>=4.35
+  - python=3.10
+  - r-base=4.3.2
+  - r-data.table=1.14.10
+  - r-jsonlite=1.8.8
+  - r-knitr=1.45
+  - r-markdown=1.12
+  - r-matrix=1.6_4
+  - r-pkgdown=2.0.7
+  - r-roxygen2=7.3.1
+  - scikit-learn>=1.4.0
+  - sphinx>=6.0
+  - sphinx_rtd_theme>=2.0