[ci] Bump version for development (#4933)

* Update .appveyor.yml

* Update VERSION.txt

* Update cran-comments.md

* Auto-update configure
Co-authored-by: GitHub Actions Bot <githubactionsbot@users.noreply.github.com>

.appveyor.yml

-version: 3.3.1.99.{build}
+version: 3.3.2.99.{build}
 
 image: Visual Studio 2015
 platform: x64

R-package/configure

 #! /bin/sh
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.69 for lightgbm 3.3.1.99.
+# Generated by GNU Autoconf 2.69 for lightgbm 3.3.2.99.
 #
 #
 # Copyright (C) 1992-1996, 1998-2012 Free Software Foundation, Inc.
@@ -576,8 +576,8 @@ MAKEFLAGS=
 # Identity of this package.
 PACKAGE_NAME='lightgbm'
 PACKAGE_TARNAME='lightgbm'
-PACKAGE_VERSION='3.3.1.99'
-PACKAGE_STRING='lightgbm 3.3.1.99'
+PACKAGE_VERSION='3.3.2.99'
+PACKAGE_STRING='lightgbm 3.3.2.99'
 PACKAGE_BUGREPORT=''
 PACKAGE_URL=''
 
@@ -1182,7 +1182,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures lightgbm 3.3.1.99 to adapt to many kinds of systems.
+\`configure' configures lightgbm 3.3.2.99 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1244,7 +1244,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of lightgbm 3.3.1.99:";;
+     short | recursive ) echo "Configuration of lightgbm 3.3.2.99:";;
    esac
   cat <<\_ACEOF
 
@@ -1311,7 +1311,7 @@ fi
 test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
   cat <<\_ACEOF
-lightgbm configure 3.3.1.99
+lightgbm configure 3.3.2.99
 generated by GNU Autoconf 2.69
 
 Copyright (C) 2012 Free Software Foundation, Inc.
@@ -1328,7 +1328,7 @@ cat >config.log <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by lightgbm $as_me 3.3.1.99, which was
+It was created by lightgbm $as_me 3.3.2.99, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   $ $0 $@
@@ -2398,7 +2398,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # report actual input values of CONFIG_FILES etc. instead of their
 # values after options handling.
 ac_log="
-This file was extended by lightgbm $as_me 3.3.1.99, which was
+This file was extended by lightgbm $as_me 3.3.2.99, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -2451,7 +2451,7 @@ _ACEOF
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
 ac_cs_version="\\
-lightgbm config.status 3.3.1.99
+lightgbm config.status 3.3.2.99
 configured by $0, generated by GNU Autoconf 2.69,
   with options \\"\$ac_cs_config\\"
 

R-package/cran-comments.md

 # CRAN Submission History
 
+## v3.3.2 - Submission 1 - (TBD)
+
+### CRAN response
+
+### Maintainer Notes
+
+In this submission, we uploaded a patch that CRAN stuff provided us via e-mail. The full text of the e-mail from CRAN:
+
+```text
+Dear maintainers,
+
+This concerns the CRAN packages
+
+Cairo cepreader gpboost httpuv ipaddress lightgbm proj4 prophet
+RcppCWB RcppParallel RDieHarder re2 redux rgeolocate RGtk2 tth
+udunits2 unrtf
+
+maintained by one of you:
+
+Andreas Blaette andreas.blaette@uni-due.de: RcppCWB
+David Hall david.hall.physics@gmail.com: ipaddress
+Dirk Eddelbuettel edd@debian.org: RDieHarder
+Fabio Sigrist fabiosigrist@gmail.com: gpboost
+Friedrich Leisch Friedrich.Leisch@R-project.org: tth
+Girish Palya girishji@gmail.com: re2
+James Hiebert hiebert@uvic.ca: udunits2
+Jari Oksanen jhoksane@gmail.com: cepreader
+Kevin Ushey kevin@rstudio.com: RcppParallel
+ORPHANED: RGtk2
+Os Keyes ironholds@gmail.com: rgeolocate
+Rich FitzJohn rich.fitzjohn@gmail.com: redux
+Sean Taylor sjtz@pm.me: prophet
+Simon Urbanek simon.urbanek@r-project.org: proj4
+Simon Urbanek Simon.Urbanek@r-project.org: Cairo
+Winston Chang winston@rstudio.com: httpuv
+Yu Shi yushi2@microsoft.com: lightgbm
+
+your packages need to be updated for R-devel/R 4.2 to work on Windows,
+following the recent switch to UCRT and Rtools42.
+
+Sorry for the group message, please feel free to respond individually
+regarding your package or ask specifically about what needs to be fixed.
+
+I've created patches for you, so please review them and fix your packages:
+
+https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsvn.r-project.org%2FR-dev-web%2Ftrunk%2FWindowsBuilds%2Fwinutf8%2Fucrt3%2Fr_packages%2Fpatches%2FCRAN%2F&data=04%7C01%7Cyushi2%40microsoft.com%7C8e6c353d1a8842c81eeb08d9bef5d835%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C0%7C637750786169848244%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=rFGf7Y4Dvo6g1kzV%2BeAJDLGm1TUtzQsLsavElTw6H1U%3D&reserved=0
+
+You can apply them as follows
+
+tar xfz package_1.0.0.tar.gz
+
+wget
+https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsvn.r-project.org%2FR-dev-web%2Ftrunk%2FWindowsBuilds%2Fwinutf8%2Fucrt3%2Fr_packages%2Fpatches%2FCRAN%2Fpackage.diff&data=04%7C01%7Cyushi2%40microsoft.com%7C8e6c353d1a8842c81eeb08d9bef5d835%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C0%7C637750786169848244%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=iyTjhoqvzj3IbQ8HGCZeh1IQl34FAGpIdVyZWkzNvO0%3D&reserved=0
+
+patch --binary < package.diff
+
+These patches are currently automatically applied by R-devel on Windows
+at installation time, which makes most of your packages pass their
+checks (as OK or NOTE), but please check your results carefully and
+carefully review the patches. Usually these changes were because of
+newer GCC or newer MinGW in the toolchain, but some for other reasons,
+and some of them will definitely have to be improved so that the package
+keeps building also for older versions of R using Rtools40. We have only
+been testing the patches with UCRT (and Rtools42) on Windows.
+
+For more information, please see
+
+https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdeveloper.r-project.org%2FBlog%2Fpublic%2F2021%2F12%2F07%2Fupcoming-changes-in-r-4.2-on-windows%2F&amp;data=04%7C01%7Cyushi2%40microsoft.com%7C8e6c353d1a8842c81eeb08d9bef5d835%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C0%7C637750786169848244%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&amp;sdata=SY77zgtbDbHvTxTgPLOoe%2Fw5OZDhXvJoxpVOoEaKoYo%3D&amp;reserved=0
+https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdeveloper.r-project.org%2FWindowsBuilds%2Fwinutf8%2Fucrt3%2Fhowto.html&amp;data=04%7C01%7Cyushi2%40microsoft.com%7C8e6c353d1a8842c81eeb08d9bef5d835%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C0%7C637750786169848244%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&amp;sdata=dlVJ4nhQlmDPd56bHoVsWZuRfrUUorvOWxoUTmVDM%2Bg%3D&amp;reserved=0
+
+Once you add your patches/fix the issues, your package will probably
+show a warning during R CMD check (as patching would be attempted to be
+applied again). That's ok, at that point please let me know and I will
+remove my patch from the repository of automatically applied patches.
+
+If you end up just applying the patch as is, there is probably no need
+testing on your end, but you can do so using Winbuilder, r-hub, github
+actions (e.g. https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fkalibera%2Fucrt3&amp;data=04%7C01%7Cyushi2%40microsoft.com%7C8e6c353d1a8842c81eeb08d9bef5d835%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C0%7C637750786169848244%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&amp;sdata=msqoPzqDStlAUn%2Bb6gGevwFPD%2FaNL5dTxiNud2Sqzy8%3D&amp;reserved=0).
+
+If you wanted to test locally on your Windows machine and do not have a
+UCRT version of R-devel yet, please uninstall your old version of
+R-devel, delete the old library used with that, install a new UCRT
+version of R-devel , and install Rtools42. You can keep Rtools40
+installed if you need it with R 4.1 or earlier.
+
+Currently, the new R-devel can be downloaded from
+https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.r-project.org%2Fnosvn%2Fwinutf8%2Fucrt3%2Fweb%2Frdevel.html&amp;data=04%7C01%7Cyushi2%40microsoft.com%7C8e6c353d1a8842c81eeb08d9bef5d835%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C0%7C637750786169848244%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&amp;sdata=0hCwONzLmcW0GIXNqiOZQEIuhNA%2BjHhQvXsofs8J98o%3D&amp;reserved=0
+
+And Rtools42 from
+https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.r-project.org%2Fnosvn%2Fwinutf8%2Fucrt3%2Fweb%2Frtools.html&amp;data=04%7C01%7Cyushi2%40microsoft.com%7C8e6c353d1a8842c81eeb08d9bef5d835%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C0%7C637750786169848244%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&amp;sdata=WLWLbOyQKbaYz8gkfKz2sqoGknjIOtl1aGAhUF%2Bpylg%3D&amp;reserved=0
+
+If you end up testing locally, you can use R_INSTALL_TIME_PATCHES
+environment variable to disable the automated patching, see the "howto"
+document above. That way you could also see what the original issue was
+causing.
+
+If you wanted to find libraries to link for yourself, e.g. in a newer
+version of your package, please look for "Using findLinkingOrder with
+Rtools42 (tiff package example)" in the "howto" document above. I
+created the patches for you manually before we finished this script, so
+you may be able to create a shorter version using it, but - it's
+probably not worth the effort.
+
+If you wanted to try in a virtual machine, but did not have a license,
+you can use also an automated setup of a free trial VM from
+https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdeveloper.r-project.org%2FBlog%2Fpublic%2F2021%2F03%2F18%2Fvirtual-windows-machine-for-checking-r-packages&amp;data=04%7C01%7Cyushi2%40microsoft.com%7C8e6c353d1a8842c81eeb08d9bef5d835%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C0%7C637750786169848244%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&amp;sdata=aFFQYuC9CoBwBiLgZHi8N3yUnSiHu5Xtdqb2YBiMIHQ%3D&amp;reserved=0
+
+(but that needs a very good and un-metered network connection to install)
+
+Please let us know if you have any questions.
+
+Thanks,
+Tomas & Uwe
+```
+
 ## v3.3.1 - Submission 1 - (October 27, 2021)
 
 ### CRAN response

VERSION.txt

-3.3.1.99
+3.3.2.99