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Commit 548cec82 authored by Jeff Daily's avatar Jeff Daily
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Merge branch 'master' into rocm3

parents 2f7bd8ef 5dbfcdc4
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.ci/append-comment.sh
View file @ 548cec82
#!/bin/bash #!/bin/bash
# #
# [description] # [description]
# Update comment appending a given body to the specified original comment. # Post a comment to a pull request.
# #
# [usage] # [usage]
# append-comment.sh <COMMENT_ID> <BODY> # append-comment.sh <PULL_REQUEST_ID> <BODY>
# #
# COMMENT_ID: ID of comment that should be modified. # PULL_REQUEST_ID: ID of PR to post the comment on.
# #
# BODY: Text that will be appended to the original comment body. # BODY: Text of the comment to be posted.
set -e -E -u -o pipefail set -e -E -u -o pipefail
...@@ -18,20 +18,13 @@ if [ -z "$GITHUB_ACTIONS" ]; then ...@@ -18,20 +18,13 @@ if [ -z "$GITHUB_ACTIONS" ]; then
fi fi
if [ $# -ne 2 ]; then if [ $# -ne 2 ]; then
echo "Usage: $0 <COMMENT_ID> <BODY>" echo "Usage: $0 <PULL_REQUEST_ID> <BODY>"
exit 1 exit 1
fi fi
comment_id=$1 pr_id=$1
body=$2 body=$2
old_comment_body=$(
curl -sL \
-H "Accept: application/vnd.github.v3+json" \
-H "Authorization: token $SECRETS_WORKFLOW" \
"${GITHUB_API_URL}/repos/microsoft/LightGBM/issues/comments/$comment_id" | \
jq '.body'
)
body=${body/failure/failure ❌} body=${body/failure/failure ❌}
body=${body/error/failure ❌} body=${body/error/failure ❌}
body=${body/cancelled/failure ❌} body=${body/cancelled/failure ❌}
...@@ -39,12 +32,13 @@ body=${body/timed_out/failure ❌} ...@@ -39,12 +32,13 @@ body=${body/timed_out/failure ❌}
body=${body/success/success ✔️} body=${body/success/success ✔️}
data=$( data=$(
jq -n \ jq -n \
--argjson body "${old_comment_body%?}\r\n\r\n$body\"" \ --argjson body "\"$body\"" \
'{"body":$body}' '{"body": $body}'
) )
curl -sL \ curl -sL \
-X PATCH \ --fail \
-X POST \
-H "Accept: application/vnd.github.v3+json" \ -H "Accept: application/vnd.github.v3+json" \
-H "Authorization: token $SECRETS_WORKFLOW" \ -H "Authorization: token ${GITHUB_TOKEN}" \
-d "$data" \ -d "$data" \
"${GITHUB_API_URL}/repos/microsoft/LightGBM/issues/comments/$comment_id" "${GITHUB_API_URL}/repos/microsoft/LightGBM/issues/${pr_id}/comments"
.ci/test-docs.sh → .ci/build-docs.sh
View file @ 548cec82
...@@ -10,11 +10,4 @@ conda env create \ ...@@ -10,11 +10,4 @@ conda env create \
# shellcheck disable=SC1091 # shellcheck disable=SC1091
source activate test-env source activate test-env
# build docs
make -C docs html || exit 1 make -C docs html || exit 1
if [[ $TASK == "check-links" ]]; then
# check docs for broken links
pip install 'linkchecker>=10.5.0'
linkchecker --config=./docs/.linkcheckerrc ./docs/_build/html/*.html || exit 1
fi
.ci/check-workflow-status.sh 0 → 100755
View file @ 548cec82
#!/bin/bash
# [description]
#
# Look for the last run of a given GitHub Actions workflow on a given branch.
# If there's never been one (as might be the case with optional workflows like valgrind),
# exit with 0.
#
# Otherwise, check the status of that latest run.
# If it wasn't successful, exit with a non-0 exit code.
#
# [usage]
#
# check-workflow-status.sh <BRANCH> <WORKFLOW_FILE>
#
# BRANCH: name of a branch involved in a pull request.
#
# WORKFLOW_FILE: filename (e.g. 'r_valgrind.yml') defining the GitHub Actions workflow.
#
set -e -u -o pipefail
BRANCH="${1}"
WORKFLOW_FILE="${2}"
echo "Searching for latest run of '${WORKFLOW_FILE}' on branch '${BRANCH}'"
LATEST_RUN_ID=$(
gh run list \
--repo "microsoft/LightGBM" \
--branch "${BRANCH}" \
--workflow "${WORKFLOW_FILE}" \
--json 'createdAt,databaseId' \
--jq 'sort_by(.createdAt) | reverse | .[0] | .databaseId'
)
if [[ "${LATEST_RUN_ID}" == "" ]]; then
echo "No runs of '${WORKFLOW_FILE}' found on branch '${BRANCH}'"
exit 0
fi
echo "Checking status of workflow run '${LATEST_RUN_ID}'"
gh run view \
--repo "microsoft/LightGBM" \
--exit-status \
"${LATEST_RUN_ID}"
.ci/get-workflow-status.py deleted 100644 → 0
View file @ 2f7bd8ef
# coding: utf-8
"""Get the most recent status of workflow for the current PR.
[usage]
python get-workflow-status.py TRIGGER_PHRASE
TRIGGER_PHRASE: Code phrase that triggers workflow.
"""
import json
from os import environ
from sys import argv, exit
from time import sleep
from urllib import request
def get_runs(trigger_phrase):
"""Get all triggering workflow comments in the current PR.
Parameters
----------
trigger_phrase : str
Code phrase that triggers workflow.
Returns
-------
pr_runs : list
List of comment objects sorted by the time of creation in decreasing order.
"""
pr_runs = []
if environ.get("GITHUB_EVENT_NAME", "") == "pull_request":
pr_number = int(environ.get("GITHUB_REF").split("/")[-2])
page = 1
while True:
req = request.Request(
url="{}/repos/microsoft/LightGBM/issues/{}/comments?page={}&per_page=100".format(
environ.get("GITHUB_API_URL"), pr_number, page
),
headers={"Accept": "application/vnd.github.v3+json"},
)
url = request.urlopen(req)
data = json.loads(url.read().decode("utf-8"))
url.close()
if not data:
break
runs_on_page = [
i
for i in data
if i["author_association"].lower() in {"owner", "member", "collaborator"}
and i["body"].startswith("/gha run {}".format(trigger_phrase))
]
pr_runs.extend(runs_on_page)
page += 1
return pr_runs[::-1]
def get_status(runs):
"""Get the most recent status of workflow for the current PR.
Parameters
----------
runs : list
List of comment objects sorted by the time of creation in decreasing order.
Returns
-------
status : str
The most recent status of workflow.
Can be 'success', 'failure' or 'in-progress'.
"""
status = "success"
for run in runs:
body = run["body"]
if "Status: " in body:
if "Status: skipped" in body:
continue
if "Status: failure" in body:
status = "failure"
break
if "Status: success" in body:
status = "success"
break
else:
status = "in-progress"
break
return status
if __name__ == "__main__":
trigger_phrase = argv[1]
while True:
status = get_status(get_runs(trigger_phrase))
if status != "in-progress":
break
sleep(60)
if status == "failure":
exit(1)
.ci/lint-all.sh
View file @ 548cec82
...@@ -8,21 +8,14 @@ pwsh -file ./.ci/lint-powershell.ps1 || exit 1 ...@@ -8,21 +8,14 @@ pwsh -file ./.ci/lint-powershell.ps1 || exit 1
conda create -q -y -n test-env \ conda create -q -y -n test-env \
"python=3.13[build=*_cp*]" \ "python=3.13[build=*_cp*]" \
'biome>=1.9.3' \
'matplotlib-base>=3.9.1' \
'mypy>=1.11.1' \
'pre-commit>=3.8.0' \ 'pre-commit>=3.8.0' \
'pyarrow-core>=17.0' \
'scikit-learn>=1.5.2' \
'r-lintr>=3.1.2' 'r-lintr>=3.1.2'
# shellcheck disable=SC1091 # shellcheck disable=SC1091
source activate test-env source activate test-env
bash ./.ci/run-pre-commit-mypy.sh || exit 1 echo "Running pre-commit checks"
pre-commit run --all-files || exit 1
echo "Linting R code" echo "Linting R code"
Rscript ./.ci/lint-r-code.R "$(pwd)" || exit 1 Rscript ./.ci/lint-r-code.R "$(pwd)" || exit 1
echo "Linting JavaScript code"
bash ./.ci/lint-js.sh || exit 1
.ci/lint-js.sh deleted 100644 → 0
View file @ 2f7bd8ef
#!/bin/bash
set -e -E -u -o pipefail
biome ci --config-path=./biome.json --diagnostic-level=info --error-on-warnings ./
.ci/parameter-generator.py
View file @ 548cec82
...@@ -289,7 +289,13 @@ def gen_parameter_code( ...@@ -289,7 +289,13 @@ def gen_parameter_code(
* This file is auto generated by LightGBM\.ci\parameter-generator.py from LightGBM\include\LightGBM\config.h file. * This file is auto generated by LightGBM\.ci\parameter-generator.py from LightGBM\include\LightGBM\config.h file.
*/ */
""" """
str_to_write += "#include<LightGBM/config.h>\nnamespace LightGBM {\n" str_to_write += "#include <LightGBM/config.h>\n\n"
str_to_write += "#include <string>\n"
str_to_write += "#include <unordered_map>\n"
str_to_write += "#include <unordered_set>\n"
str_to_write += "#include <vector>\n\n"
str_to_write += "namespace LightGBM {\n"
# alias table # alias table
str_to_write += "const std::unordered_map<std::string, std::string>& Config::alias_table() {\n" str_to_write += "const std::unordered_map<std::string, std::string>& Config::alias_table() {\n"
str_to_write += " static std::unordered_map<std::string, std::string> aliases({\n" str_to_write += " static std::unordered_map<std::string, std::string> aliases({\n"
......
.ci/rerun-workflow.sh
View file @ 548cec82
...@@ -31,7 +31,7 @@ pr_branch=$3 ...@@ -31,7 +31,7 @@ pr_branch=$3
runs=$( runs=$(
curl -sL \ curl -sL \
-H "Accept: application/vnd.github.v3+json" \ -H "Accept: application/vnd.github.v3+json" \
-H "Authorization: token $SECRETS_WORKFLOW" \ -H "Authorization: token ${GITHUB_TOKEN}" \
"${GITHUB_API_URL}/repos/microsoft/LightGBM/actions/workflows/${workflow_id}/runs?event=pull_request&branch=${pr_branch}" | \ "${GITHUB_API_URL}/repos/microsoft/LightGBM/actions/workflows/${workflow_id}/runs?event=pull_request&branch=${pr_branch}" | \
jq '.workflow_runs' jq '.workflow_runs'
) )
...@@ -42,6 +42,6 @@ if [[ $(echo "${runs}" | jq 'length') -gt 0 ]]; then ...@@ -42,6 +42,6 @@ if [[ $(echo "${runs}" | jq 'length') -gt 0 ]]; then
curl -sL \ curl -sL \
-X POST \ -X POST \
-H "Accept: application/vnd.github.v3+json" \ -H "Accept: application/vnd.github.v3+json" \
-H "Authorization: token $SECRETS_WORKFLOW" \ -H "Authorization: token ${GITHUB_TOKEN}" \
"${GITHUB_API_URL}/repos/microsoft/LightGBM/actions/runs/$(echo "${runs}" | jq '.[0].id')/rerun" "${GITHUB_API_URL}/repos/microsoft/LightGBM/actions/runs/$(echo "${runs}" | jq '.[0].id')/rerun"
fi fi
.ci/run-pre-commit-mypy.sh deleted 100755 → 0
View file @ 2f7bd8ef
#!/bin/bash
set -e -E -u -o pipefail
echo "running pre-commit checks"
pre-commit run --all-files || exit 1
echo "done running pre-commit checks"
echo "running mypy"
mypy \
--config-file=./python-package/pyproject.toml \
./python-package \
|| true
echo "done running mypy"
.ci/set-commit-status.sh
View file @ 548cec82
...@@ -46,8 +46,9 @@ data=$( ...@@ -46,8 +46,9 @@ data=$(
) )
curl -sL \ curl -sL \
--fail \
-X POST \ -X POST \
-H "Accept: application/vnd.github.v3+json" \ -H "Accept: application/vnd.github.v3+json" \
-H "Authorization: token $SECRETS_WORKFLOW" \ -H "Authorization: token ${GITHUB_TOKEN}" \
-d "$data" \ -d "$data" \
"${GITHUB_API_URL}/repos/microsoft/LightGBM/statuses/$sha" "${GITHUB_API_URL}/repos/microsoft/LightGBM/statuses/$sha"
.ci/trigger-dispatch-run.sh deleted 100755 → 0
View file @ 2f7bd8ef
#!/bin/bash
#
# [description]
# Trigger manual workflow run by a dispatch event.
#
# [usage]
# trigger-dispatch-run.sh <PR_URL> <COMMENT_ID> <DISPATCH_NAME>
#
# PR_URL: URL of pull request from which dispatch is triggering.
#
# COMMENT_ID: ID of comment that is triggering a dispatch.
#
# DISPATCH_NAME: Name of a dispatch to be triggered.
set -e -E -u -o pipefail
if [ -z "$GITHUB_ACTIONS" ]; then
echo "Must be run inside GitHub Actions CI"
exit 1
fi
if [ $# -ne 3 ]; then
echo "Usage: $0 <PR_URL> <COMMENT_ID> <DISPATCH_NAME>"
exit 1
fi
pr_url=$1
comment_id=$2
dispatch_name=$3
pr=$(
curl -sL \
-H "Accept: application/vnd.github.v3+json" \
-H "Authorization: token $SECRETS_WORKFLOW" \
"$pr_url"
)
data=$(
jq -n \
--arg event_type "$dispatch_name" \
--arg pr_number "$(echo "$pr" | jq '.number')" \
--arg pr_sha "$(echo "$pr" | jq '.head.sha')" \
--arg pr_branch "$(echo "$pr" | jq '.head.ref')" \
--arg comment_number "$comment_id" \
'{"event_type":$event_type,"client_payload":{"pr_number":$pr_number,"pr_sha":$pr_sha,"pr_branch":$pr_branch,"comment_number":$comment_number}}'
)
curl -sL \
-X POST \
-H "Accept: application/vnd.github.v3+json" \
-H "Authorization: token $SECRETS_WORKFLOW" \
-d "$data" \
"${GITHUB_API_URL}/repos/microsoft/LightGBM/dispatches"
.git-blame-ignore-revs
View file @ 548cec82
...@@ -4,3 +4,5 @@ ...@@ -4,3 +4,5 @@
1b792e716682254c33ddb5eb845357e84018636d 1b792e716682254c33ddb5eb845357e84018636d
# enable ruff-format on main library Python code (#6336) # enable ruff-format on main library Python code (#6336)
dd31208ab7a7aea86762830697b00666f843ded9 dd31208ab7a7aea86762830697b00666f843ded9
# enable whitespace/indent_namespace rule from cpplint (#7056)
50f11a9f3c066eadee475ea567f9e9d49e6bb827
.github/workflows/linkchecker.yml → .github/workflows/lychee.yml
View file @ 548cec82
...@@ -23,9 +23,21 @@ jobs: ...@@ -23,9 +23,21 @@ jobs:
fetch-depth: 5 fetch-depth: 5
persist-credentials: false persist-credentials: false
submodules: false submodules: false
- name: Setup and run tests - name: Build docs
run: | run: |
export CONDA=${HOME}/miniforge export CONDA=${HOME}/miniforge
export PATH=${CONDA}/bin:${HOME}/.local/bin:${PATH} export PATH=${CONDA}/bin:${HOME}/.local/bin:${PATH}
$GITHUB_WORKSPACE/.ci/setup.sh || exit 1 $GITHUB_WORKSPACE/.ci/setup.sh || exit 1
$GITHUB_WORKSPACE/.ci/test-docs.sh || exit 1 $GITHUB_WORKSPACE/.ci/build-docs.sh || exit 1
- name: Check links
uses: lycheeverse/lychee-action@v2.6.1
with:
args: >-
--config=./docs/.lychee.toml
--
"**/*.rst"
"**/*.md"
"./R-package/**/*.Rd"
"./docs/_build/html/*.html"
fail: true
failIfEmpty: true
.github/workflows/optional_checks.yml
View file @ 548cec82
...@@ -7,8 +7,10 @@ on: ...@@ -7,8 +7,10 @@ on:
jobs: jobs:
all-optional-checks-successful: all-optional-checks-successful:
timeout-minutes: 120 timeout-minutes: 30
runs-on: ubuntu-latest runs-on: ubuntu-latest
env:
GITHUB_TOKEN: ${{ github.token }}
steps: steps:
- name: Checkout repository - name: Checkout repository
uses: actions/checkout@v5 uses: actions/checkout@v5
...@@ -16,19 +18,12 @@ jobs: ...@@ -16,19 +18,12 @@ jobs:
fetch-depth: 5 fetch-depth: 5
persist-credentials: false persist-credentials: false
submodules: false submodules: false
- name: Check that all tests succeeded - name: Check valgrind workflow
shell: bash shell: bash
run: | run: |
workflows=( # ref: https://docs.github.com/en/actions/reference/workflows-and-actions/contexts#github-context
"R valgrind tests;r-valgrind" PR_BRANCH="${GITHUB_HEAD_REF:-${GITHUB_REF#refs/heads/}}"
) echo "checking status for branch '${PR_BRANCH}'"
for i in "${workflows[@]}"; do ./.ci/check-workflow-status.sh \
workflow_name=${i%;*} "${PR_BRANCH}" \
comment="The last reported status from workflow \"$workflow_name\" is failure." 'r_valgrind.yml'
comment="${comment} Commit fixes and rerun the workflow."
trigger_phrase=${i#*;}
python \
"$GITHUB_WORKSPACE/.ci/get-workflow-status.py" \
"$trigger_phrase" \
|| { echo "${comment}"; exit 1; }
done
.github/workflows/r_configure.yml
View file @ 548cec82
name: R generate configure name: R generate configure
on: on:
repository_dispatch: workflow_dispatch:
types: [gha_run_r_configure] inputs:
pr-branch:
type: string
description: |
Branch in microsoft/LightGBM to update.
permissions:
actions: none
checks: none
contents: write
deployments: none
discussions: none
id-token: write
issues: none
packages: none
pages: none
pull-requests: read
repository-projects: none
security-events: none
statuses: none
jobs: jobs:
r-configure: r-configure:
...@@ -24,18 +43,19 @@ jobs: ...@@ -24,18 +43,19 @@ jobs:
uses: actions/checkout@v5 uses: actions/checkout@v5
with: with:
fetch-depth: 5 fetch-depth: 5
submodules: true submodules: false
repository: microsoft/LightGBM repository: microsoft/LightGBM
ref: "refs/heads/${{ fromJSON(github.event.client_payload.pr_branch) }}" ref: "refs/heads/${{ inputs.pr-branch }}"
token: ${{ secrets.WORKFLOW }} token: ${{ github.token }}
persist-credentials: true persist-credentials: true
- name: Update configure - name: Update configure
shell: bash shell: bash
run: ./R-package/recreate-configure.sh || exit 1 run: ./R-package/recreate-configure.sh || exit 1
- name: Push changes - name: Push changes
run: | run: |
git config --global user.name "GitHub Actions Bot" # source for this user and email: https://github.com/orgs/community/discussions/160496
git config --global user.email "githubactionsbot@users.noreply.github.com" git config --global user.name "github-actions[bot]"
git config --global user.email "github-actions[bot]@users.noreply.github.com"
git add "./R-package/configure" git add "./R-package/configure"
git commit --allow-empty -m "Auto-update configure" git commit --allow-empty -m "Auto-update configure"
git push git push
.github/workflows/r_valgrind.yml
View file @ 548cec82
name: R valgrind tests name: R valgrind tests
on: on:
repository_dispatch: workflow_dispatch:
types: [gha_run_r_valgrind] inputs:
pr-branch:
type: string
description: |
Branch the PR was submitted from.
Branches from forks should be prefixed with the user/org they originate from,
like '{user}:{branch}'.
pr-number:
type: string
description: Pull request ID, found in the PR URL.
permissions:
actions: none
checks: write
contents: read
deployments: none
discussions: none
id-token: write
issues: none
packages: none
pages: none
pull-requests: write
repository-projects: none
security-events: none
statuses: write
jobs: jobs:
test-r-valgrind: test-r-valgrind:
...@@ -11,7 +35,7 @@ jobs: ...@@ -11,7 +35,7 @@ jobs:
runs-on: ubuntu-latest runs-on: ubuntu-latest
container: wch1/r-debug container: wch1/r-debug
env: env:
SECRETS_WORKFLOW: ${{ secrets.WORKFLOW }} GITHUB_TOKEN: ${{ github.token }}
steps: steps:
- name: Install essential software before checkout - name: Install essential software before checkout
shell: bash shell: bash
...@@ -30,20 +54,7 @@ jobs: ...@@ -30,20 +54,7 @@ jobs:
submodules: true submodules: true
persist-credentials: false persist-credentials: false
repository: microsoft/LightGBM repository: microsoft/LightGBM
ref: "refs/pull/${{ github.event.client_payload.pr_number }}/merge" ref: "refs/pull/${{ inputs.pr-number }}/merge"
- name: Send init status
if: ${{ always() }}
shell: bash
run: |
$GITHUB_WORKSPACE/.ci/set-commit-status.sh \
"${{ github.workflow }}" \
"pending" \
"${{ github.event.client_payload.pr_sha }}"
comment="Workflow **${{ github.workflow }}** has been triggered! 🚀\r\n"
comment="${comment}${GITHUB_SERVER_URL}/microsoft/LightGBM/actions/runs/${GITHUB_RUN_ID}"
$GITHUB_WORKSPACE/.ci/append-comment.sh \
"${{ github.event.client_payload.comment_number }}" \
"${comment}"
- name: Run tests with valgrind - name: Run tests with valgrind
shell: bash shell: bash
run: ./.ci/test-r-package-valgrind.sh run: ./.ci/test-r-package-valgrind.sh
...@@ -53,15 +64,18 @@ jobs: ...@@ -53,15 +64,18 @@ jobs:
$GITHUB_WORKSPACE/.ci/set-commit-status.sh \ $GITHUB_WORKSPACE/.ci/set-commit-status.sh \
"${{ github.workflow }}" \ "${{ github.workflow }}" \
"${{ job.status }}" \ "${{ job.status }}" \
"${{ github.event.client_payload.pr_sha }}" "${{ github.sha }}"
comment="Workflow **${{ github.workflow }}** has been triggered! 🚀\r\n"
comment="${comment}\r\n${GITHUB_SERVER_URL}/microsoft/LightGBM/actions/runs/${GITHUB_RUN_ID} \r\n"
comment="${comment}\r\nStatus: ${{ job.status }}"
$GITHUB_WORKSPACE/.ci/append-comment.sh \ $GITHUB_WORKSPACE/.ci/append-comment.sh \
"${{ github.event.client_payload.comment_number }}" \ "${{ inputs.pr-number }}" \
"Status: ${{ job.status }}." "${comment}"
- name: Rerun workflow-indicator - name: Rerun workflow-indicator
if: ${{ always() }} if: ${{ always() }}
run: | run: |
bash $GITHUB_WORKSPACE/.ci/rerun-workflow.sh \ bash $GITHUB_WORKSPACE/.ci/rerun-workflow.sh \
"optional_checks.yml" \ "optional_checks.yml" \
"${{ github.event.client_payload.pr_number }}" \ "${{ inputs.pr-number }}" \
"${{ github.event.client_payload.pr_branch }}" \ "${{ inputs.pr-branch }}" \
|| true || true
.github/workflows/static_analysis.yml
View file @ 548cec82
...@@ -58,7 +58,7 @@ jobs: ...@@ -58,7 +58,7 @@ jobs:
export CONDA=${HOME}/miniforge export CONDA=${HOME}/miniforge
export PATH=${CONDA}/bin:$HOME/.local/bin:${PATH} export PATH=${CONDA}/bin:$HOME/.local/bin:${PATH}
$GITHUB_WORKSPACE/.ci/setup.sh || exit 1 $GITHUB_WORKSPACE/.ci/setup.sh || exit 1
$GITHUB_WORKSPACE/.ci/test-docs.sh || exit 1 $GITHUB_WORKSPACE/.ci/build-docs.sh || exit 1
r-check-docs: r-check-docs:
name: r-package-check-docs name: r-package-check-docs
timeout-minutes: 60 timeout-minutes: 60
......
.github/workflows/triggering_comments.yml deleted 100644 → 0
View file @ 2f7bd8ef
name: Triggering comments
on:
issue_comment:
types: [created]
jobs:
triggering-tests:
if: |
github.event.issue.pull_request &&
contains('OWNER,MEMBER,COLLABORATOR', github.event.comment.author_association) &&
startsWith(github.event.comment.body, '/gha run')
runs-on: ubuntu-latest
env:
SECRETS_WORKFLOW: ${{ secrets.WORKFLOW }}
steps:
- name: Checkout repository
uses: actions/checkout@v5
with:
fetch-depth: 5
persist-credentials: false
submodules: false
- name: Trigger R valgrind tests
if: github.event.comment.body == '/gha run r-valgrind'
run: |
$GITHUB_WORKSPACE/.ci/trigger-dispatch-run.sh \
"${{ github.event.issue.pull_request.url }}" \
"${{ github.event.comment.id }}" \
"gha_run_r_valgrind"
- name: Trigger update R configure
if: github.event.comment.body == '/gha run r-configure'
run: |
$GITHUB_WORKSPACE/.ci/trigger-dispatch-run.sh \
"${{ github.event.issue.pull_request.url }}" \
"${{ github.event.comment.id }}" \
"gha_run_r_configure"
.gitignore
View file @ 548cec82
...@@ -313,6 +313,7 @@ pip-delete-this-directory.txt ...@@ -313,6 +313,7 @@ pip-delete-this-directory.txt
# Unit test / coverage reports # Unit test / coverage reports
htmlcov/ htmlcov/
.tox/ .tox/
.nox/
.coverage .coverage
.coverage.* .coverage.*
.cache .cache
...@@ -320,8 +321,11 @@ nosetests.xml ...@@ -320,8 +321,11 @@ nosetests.xml
prof/ prof/
*.prof *.prof
coverage.xml coverage.xml
*,cover *.cover
*.py.cover
.hypothesis/ .hypothesis/
.pytest_cache/
cover/
**/coverage.html **/coverage.html
**/coverage.html.zip **/coverage.html.zip
**/Rplots.pdf **/Rplots.pdf
...@@ -469,3 +473,8 @@ dask-worker-space/ ...@@ -469,3 +473,8 @@ dask-worker-space/
# pixi environments # pixi environments
.pixi .pixi
# mypy
.mypy_cache/
.dmypy.json
dmypy.json
.pre-commit-config.yaml
View file @ 548cec82
...@@ -21,14 +21,15 @@ repos: ...@@ -21,14 +21,15 @@ repos:
rev: '1.4.3' rev: '1.4.3'
hooks: hooks:
- id: cmakelint - id: cmakelint
args: ["--linelength=120", "--filter=-convention/filename,-package/stdargs,-readability/wonkycase"] args: ["--linelength=120"]
- repo: https://github.com/cpplint/cpplint - repo: https://github.com/cpplint/cpplint
rev: '2.0.2' rev: '2.0.2'
hooks: hooks:
- id: cpplint - id: cpplint
args: args:
- --root=.. # workaround to get correct header guard pattern
- --recursive - --recursive
- --filter=-build/c++11,-build/include_subdir,-build/include_what_you_use,-build/header_guard,-whitespace/indent_namespace,-whitespace/line_length - --filter=-build/include_subdir,-whitespace/line_length
- repo: local - repo: local
hooks: hooks:
- id: check-omp-pragmas - id: check-omp-pragmas
...@@ -62,17 +63,22 @@ repos: ...@@ -62,17 +63,22 @@ repos:
- sphinx>=8.1.3 - sphinx>=8.1.3
- sphinx_rtd_theme>=3.0.1 - sphinx_rtd_theme>=3.0.1
- repo: https://github.com/astral-sh/ruff-pre-commit - repo: https://github.com/astral-sh/ruff-pre-commit
# Ruff version.
rev: v0.14.0 rev: v0.14.0
hooks: hooks:
# Run the linter.
- id: ruff-check - id: ruff-check
args: ["--config", "python-package/pyproject.toml"] args: ["--config", "python-package/pyproject.toml"]
types_or: [python, jupyter] types_or: [python, jupyter]
# Run the formatter.
- id: ruff-format - id: ruff-format
args: ["--config", "python-package/pyproject.toml"] args: ["--config", "python-package/pyproject.toml"]
types_or: [python, jupyter] types_or: [python, jupyter]
- repo: https://github.com/biomejs/pre-commit
rev: v2.2.5
hooks:
- id: biome-ci
args:
- --config-path=./biome.json
- --diagnostic-level=info
- --error-on-warnings
- repo: https://github.com/shellcheck-py/shellcheck-py - repo: https://github.com/shellcheck-py/shellcheck-py
rev: v0.10.0.1 rev: v0.10.0.1
hooks: hooks:
...@@ -88,3 +94,13 @@ repos: ...@@ -88,3 +94,13 @@ repos:
hooks: hooks:
- id: validate-pyproject - id: validate-pyproject
files: python-package/pyproject.toml$ files: python-package/pyproject.toml$
- repo: https://github.com/pre-commit/mirrors-mypy
rev: v1.18.2
hooks:
- id: mypy
verbose: true
entry: bash -c 'mypy --config-file=./python-package/pyproject.toml ./python-package || true'
additional_dependencies:
- matplotlib>=3.9.1
- pyarrow>=17.0
- scikit-learn>=1.5.2
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