"R-package/vscode:/vscode.git/clone" did not exist on "3b6ebd794b82e02f8d5e1d0b915533bb4c36dbfc"
sklearn.py 35.2 KB
Newer Older
wxchan's avatar
wxchan committed
1
# coding: utf-8
2
# pylint: disable = invalid-name, W0105, C0111, C0301
wxchan's avatar
wxchan committed
3
4
"""Scikit-Learn Wrapper interface for LightGBM."""
from __future__ import absolute_import
5

wxchan's avatar
wxchan committed
6
import numpy as np
7
import warnings
8
9
10
11
12
try:
    import pandas as pd
    _IS_PANDAS_INSTALLED = True
except ImportError:
    _IS_PANDAS_INSTALLED = False
13

wxchan's avatar
wxchan committed
14
from .basic import Dataset, LightGBMError
15
from .compat import (SKLEARN_INSTALLED, _LGBMClassifierBase,
16
17
                     LGBMNotFittedError, _LGBMLabelEncoder, _LGBMModelBase,
                     _LGBMRegressorBase, _LGBMCheckXY, _LGBMCheckArray, _LGBMCheckConsistentLength,
18
                     _LGBMCheckClassificationTargets, argc_, range_, LGBMDeprecationWarning)
wxchan's avatar
wxchan committed
19
from .engine import train
20

wxchan's avatar
wxchan committed
21

22
def _objective_function_wrapper(func):
wxchan's avatar
wxchan committed
23
    """Decorate an objective function
24
25
26
27
    Note: for multi-class task, the y_pred is group by class_id first, then group by row_id.
          If you want to get i-th row y_pred in j-th class, the access way is y_pred[j * num_data + i]
          and you should group grad and hess in this way as well.

wxchan's avatar
wxchan committed
28
29
30
    Parameters
    ----------
    func: callable
31
        Expects a callable with signature ``func(y_true, y_pred)`` or ``func(y_true, y_pred, group):
32
33
34
35
36
37
            y_true: array-like of shape = [n_samples]
                The target values.
            y_pred: array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class)
                The predicted values.
            group: array-like
                Group/query data, used for ranking task.
wxchan's avatar
wxchan committed
38
39
40
41
42
43
44

    Returns
    -------
    new_func: callable
        The new objective function as expected by ``lightgbm.engine.train``.
        The signature is ``new_func(preds, dataset)``:

45
46
        preds: array-like of shape = [n_samples] or shape = [n_samples * n_classes]
            The predicted values.
wxchan's avatar
wxchan committed
47
48
        dataset: ``dataset``
            The training set from which the labels will be extracted using
49
            ``dataset.get_label()``.
wxchan's avatar
wxchan committed
50
51
52
53
    """
    def inner(preds, dataset):
        """internal function"""
        labels = dataset.get_label()
wxchan's avatar
wxchan committed
54
        argc = argc_(func)
55
56
57
58
59
        if argc == 2:
            grad, hess = func(labels, preds)
        elif argc == 3:
            grad, hess = func(labels, preds, dataset.get_group())
        else:
wxchan's avatar
wxchan committed
60
            raise TypeError("Self-defined objective function should have 2 or 3 arguments, got %d" % argc)
wxchan's avatar
wxchan committed
61
62
63
64
65
66
67
68
69
70
71
        """weighted for objective"""
        weight = dataset.get_weight()
        if weight is not None:
            """only one class"""
            if len(weight) == len(grad):
                grad = np.multiply(grad, weight)
                hess = np.multiply(hess, weight)
            else:
                num_data = len(weight)
                num_class = len(grad) // num_data
                if num_class * num_data != len(grad):
72
                    raise ValueError("Length of grad and hess should equal to num_class * num_data")
wxchan's avatar
wxchan committed
73
74
                for k in range_(num_class):
                    for i in range_(num_data):
wxchan's avatar
wxchan committed
75
76
77
78
79
80
                        idx = k * num_data + i
                        grad[idx] *= weight[i]
                        hess[idx] *= weight[i]
        return grad, hess
    return inner

wxchan's avatar
wxchan committed
81

82
83
def _eval_function_wrapper(func):
    """Decorate an eval function
84
85
86
    Note: for multi-class task, the y_pred is group by class_id first, then group by row_id.
          If you want to get i-th row y_pred in j-th class, the access way is y_pred[j * num_data + i].

87
88
89
    Parameters
    ----------
    func: callable
90
91
92
93
94
        Expects a callable with following functions:
            ``func(y_true, y_pred)``,
            ``func(y_true, y_pred, weight)``
         or ``func(y_true, y_pred, weight, group)``
            and return (eval_name->str, eval_result->float, is_bigger_better->Bool):
95

96
97
98
99
100
101
102
103
            y_true: array-like of shape = [n_samples]
                The target values.
            y_pred: array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class)
                The predicted values.
            weight: array_like of shape = [n_samples]
                The weight of samples.
            group: array-like
                Group/query data, used for ranking task.
104
105
106
107
108
109
110

    Returns
    -------
    new_func: callable
        The new eval function as expected by ``lightgbm.engine.train``.
        The signature is ``new_func(preds, dataset)``:

111
112
        preds: array-like of shape = [n_samples] or shape = [n_samples * n_classes]
            The predicted values.
113
114
        dataset: ``dataset``
            The training set from which the labels will be extracted using
115
            ``dataset.get_label()``.
116
117
118
119
    """
    def inner(preds, dataset):
        """internal function"""
        labels = dataset.get_label()
wxchan's avatar
wxchan committed
120
        argc = argc_(func)
121
122
123
124
125
126
127
        if argc == 2:
            return func(labels, preds)
        elif argc == 3:
            return func(labels, preds, dataset.get_weight())
        elif argc == 4:
            return func(labels, preds, dataset.get_weight(), dataset.get_group())
        else:
wxchan's avatar
wxchan committed
128
            raise TypeError("Self-defined eval function should have 2, 3 or 4 arguments, got %d" % argc)
129
130
    return inner

wxchan's avatar
wxchan committed
131

132
133
class LGBMModel(_LGBMModelBase):
    """Implementation of the scikit-learn API for LightGBM."""
wxchan's avatar
wxchan committed
134

135
    def __init__(self, boosting_type="gbdt", num_leaves=31, max_depth=-1,
wxchan's avatar
wxchan committed
136
                 learning_rate=0.1, n_estimators=10, max_bin=255,
137
138
                 subsample_for_bin=200000, objective=None,
                 min_split_gain=0., min_child_weight=1e-3, min_child_samples=20,
139
                 subsample=1., subsample_freq=1, colsample_bytree=1.,
140
                 reg_alpha=0., reg_lambda=0., random_state=None,
141
                 n_jobs=-1, silent=True, **kwargs):
142
        """Construct a gradient boosting model.
wxchan's avatar
wxchan committed
143
144
145

        Parameters
        ----------
146
147
148
149
150
151
        boosting_type : string, optional (default="gbdt")
            'gbdt', traditional Gradient Boosting Decision Tree.
            'dart', Dropouts meet Multiple Additive Regression Trees.
            'goss', Gradient-based One-Side Sampling.
            'rf', Random Forest.
        num_leaves : int, optional (default=31)
wxchan's avatar
wxchan committed
152
            Maximum tree leaves for base learners.
153
        max_depth : int, optional (default=-1)
wxchan's avatar
wxchan committed
154
            Maximum tree depth for base learners, -1 means no limit.
155
        learning_rate : float, optional (default=0.1)
156
            Boosting learning rate.
157
        n_estimators : int, optional (default=10)
wxchan's avatar
wxchan committed
158
            Number of boosted trees to fit.
159
        max_bin : int, optional (default=255)
160
            Number of bucketed bins for feature values.
161
        subsample_for_bin : int, optional (default=50000)
wxchan's avatar
wxchan committed
162
            Number of samples for constructing bins.
163
        objective : string, callable or None, optional (default=None)
wxchan's avatar
wxchan committed
164
165
            Specify the learning task and the corresponding learning objective or
            a custom objective function to be used (see note below).
166
167
            default: 'binary' for LGBMClassifier, 'lambdarank' for LGBMRanker.
        min_split_gain : float, optional (default=0.)
wxchan's avatar
wxchan committed
168
            Minimum loss reduction required to make a further partition on a leaf node of the tree.
169
        min_child_weight : float, optional (default=1e-3)
170
            Minimum sum of instance weight(hessian) needed in a child(leaf).
171
        min_child_samples : int, optional (default=20)
172
            Minimum number of data need in a child(leaf).
173
        subsample : float, optional (default=1.)
wxchan's avatar
wxchan committed
174
            Subsample ratio of the training instance.
175
176
177
        subsample_freq : int, optional (default=1)
            Frequence of subsample, <=0 means no enable.
        colsample_bytree : float, optional (default=1.)
wxchan's avatar
wxchan committed
178
            Subsample ratio of columns when constructing each tree.
179
        reg_alpha : float, optional (default=0.)
180
            L1 regularization term on weights.
181
        reg_lambda : float, optional (default=0.)
182
            L2 regularization term on weights.
183
        random_state : int or None, optional (default=None)
wxchan's avatar
wxchan committed
184
            Random number seed.
185
            Will use default seeds in c++ code if set to None.
186
        n_jobs : int, optional (default=-1)
187
            Number of parallel threads.
188
        silent : bool, optional (default=True)
wxchan's avatar
wxchan committed
189
            Whether to print messages while running boosting.
wxchan's avatar
wxchan committed
190
191
        **kwargs : other parameters
            Check http://lightgbm.readthedocs.io/en/latest/Parameters.html for more parameters.
192
193
194

            Note
            ----
195
            \*\*kwargs is not supported in sklearn, it may cause unexpected issues.
wxchan's avatar
wxchan committed
196

197
198
199
200
201
202
203
204
205
        Attributes
        ----------
        n_features_ : int
            The number of features of fitted model.
        classes_ : array of shape = [n_classes]
            The class label array (only for classification problem).
        n_classes_ : int
            The number of classes (only for classification problem).
        best_score_ : dict or None
206
            The best score of fitted model.
207
        best_iteration_ : int or None
208
            The best iteration of fitted model if ``early_stopping_rounds`` has been specified.
209
210
211
212
213
        objective_ : string or callable
            The concrete objective used while fitting this model.
        booster_ : Booster
            The underlying Booster of this model.
        evals_result_ : dict or None
214
            The evaluation results if ``early_stopping_rounds`` has been specified.
215
216
217
        feature_importances_ : array of shape = [n_features]
            The feature importances (the higher, the more important the feature).

wxchan's avatar
wxchan committed
218
219
220
221
        Note
        ----
        A custom objective function can be provided for the ``objective``
        parameter. In this case, it should have the signature
222
223
        ``objective(y_true, y_pred) -> grad, hess`` or
        ``objective(y_true, y_pred, group) -> grad, hess``:
wxchan's avatar
wxchan committed
224

225
            y_true: array-like of shape = [n_samples]
226
                The target values.
227
            y_pred: array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
228
                The predicted values.
229
230
231
            group: array-like
                Group/query data, used for ranking task.
            grad: array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
wxchan's avatar
wxchan committed
232
                The value of the gradient for each sample point.
233
            hess: array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
234
                The value of the second derivative for each sample point.
wxchan's avatar
wxchan committed
235

236
237
238
        For multi-class task, the y_pred is group by class_id first, then group by row_id.
        If you want to get i-th row y_pred in j-th class, the access way is y_pred[j * num_data + i]
        and you should group grad and hess in this way as well.
wxchan's avatar
wxchan committed
239
        """
wxchan's avatar
wxchan committed
240
        if not SKLEARN_INSTALLED:
241
            raise LightGBMError('Scikit-learn is required for this module')
wxchan's avatar
wxchan committed
242

243
        self.boosting_type = boosting_type
244
        self.objective = objective
wxchan's avatar
wxchan committed
245
246
247
248
249
        self.num_leaves = num_leaves
        self.max_depth = max_depth
        self.learning_rate = learning_rate
        self.n_estimators = n_estimators
        self.max_bin = max_bin
wxchan's avatar
wxchan committed
250
        self.subsample_for_bin = subsample_for_bin
wxchan's avatar
wxchan committed
251
252
253
254
255
256
257
258
        self.min_split_gain = min_split_gain
        self.min_child_weight = min_child_weight
        self.min_child_samples = min_child_samples
        self.subsample = subsample
        self.subsample_freq = subsample_freq
        self.colsample_bytree = colsample_bytree
        self.reg_alpha = reg_alpha
        self.reg_lambda = reg_lambda
259
260
        self.random_state = random_state
        self.n_jobs = n_jobs
wxchan's avatar
wxchan committed
261
        self.silent = silent
wxchan's avatar
wxchan committed
262
        self._Booster = None
263
264
265
266
267
268
269
270
        self._evals_result = None
        self._best_score = None
        self._best_iteration = None
        self._other_params = {}
        self._objective = None
        self._n_features = None
        self._classes = None
        self._n_classes = None
271
        self.set_params(**kwargs)
wxchan's avatar
wxchan committed
272
273
274

    def get_params(self, deep=True):
        params = super(LGBMModel, self).get_params(deep=deep)
275
        params.update(self._other_params)
276
        if 'seed' in params:
277
            warnings.warn('The `seed` parameter is deprecated and will be removed in 2.0.12 version. '
278
279
                          'Please use `random_state` instead.', LGBMDeprecationWarning)
        if 'nthread' in params:
280
            warnings.warn('The `nthread` parameter is deprecated and will be removed in 2.0.12 version. '
281
                          'Please use `n_jobs` instead.', LGBMDeprecationWarning)
wxchan's avatar
wxchan committed
282
283
284
285
286
287
        return params

    # minor change to support `**kwargs`
    def set_params(self, **params):
        for key, value in params.items():
            setattr(self, key, value)
288
            self._other_params[key] = value
wxchan's avatar
wxchan committed
289
        return self
wxchan's avatar
wxchan committed
290

Guolin Ke's avatar
Guolin Ke committed
291
    def fit(self, X, y,
292
            sample_weight=None, init_score=None, group=None,
293
            eval_set=None, eval_names=None, eval_sample_weight=None,
294
295
296
297
            eval_init_score=None, eval_group=None, eval_metric=None,
            early_stopping_rounds=None, verbose=True, feature_name='auto',
            categorical_feature='auto', callbacks=None):
        """Build a gradient boosting model from the training set (X, y).
wxchan's avatar
wxchan committed
298
299
300

        Parameters
        ----------
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
        X : array-like or sparse matrix of shape = [n_samples, n_features]
            Input feature matrix.
        y : array-like of shape = [n_samples]
            The target values (class labels in classification, real numbers in regression).
        sample_weight : array-like of shape = [n_samples] or None, optional (default=None)
            Weights of training data.
        init_score : array-like of shape = [n_samples] or None, optional (default=None)
            Init score of training data.
        group : array-like of shape = [n_samples] or None, optional (default=None)
            Group data of training data.
        eval_set : list or None, optional (default=None)
            A list of (X, y) tuple pairs to use as a validation sets for early-stopping.
        eval_names: list of strings or None, optional (default=None)
            Names of eval_set.
        eval_sample_weight : list of arrays or None, optional (default=None)
            Weights of eval data.
        eval_init_score : list of arrays or None, optional (default=None)
            Init score of eval data.
        eval_group : list of arrays or None, optional (default=None)
            Group data of eval data.
        eval_metric : string, list of strings, callable or None, optional (default=None)
            If string, it should be a built-in evaluation metric to use.
            If callable, it should be a custom evaluation metric, see note for more details.
        early_stopping_rounds : int or None, optional (default=None)
            Activates early stopping. The model will train until the validation score stops improving.
326
            Validation error needs to decrease at least every ``early_stopping_rounds`` round(s)
327
328
329
330
331
332
333
334
335
            to continue training.
        verbose : bool, optional (default=True)
            If True and an evaluation set is used, writes the evaluation progress.
        feature_name : list of strings or 'auto', optional (default="auto")
            Feature names.
            If 'auto' and data is pandas DataFrame, data columns names are used.
        categorical_feature : list of strings or int, or 'auto', optional (default="auto")
            Categorical features.
            If list of int, interpreted as indices.
336
            If list of strings, interpreted as feature names (need to specify ``feature_name`` as well).
337
338
            If 'auto' and data is pandas DataFrame, pandas categorical columns are used.
        callbacks : list of callback functions or None, optional (default=None)
339
            List of callback functions that are applied at each iteration.
340
            See Callbacks in Python API for more information.
341

342
343
344
345
346
        Returns
        -------
        self : object
            Returns self.

347
348
        Note
        ----
wxchan's avatar
wxchan committed
349
        Custom eval function expects a callable with following functions:
350
351
352
353
354
355
356
357
358
359
360
361
362
        ``func(y_true, y_pred)``, ``func(y_true, y_pred, weight)`` or
        ``func(y_true, y_pred, weight, group)``.
        Returns (eval_name, eval_result, is_bigger_better) or
        list of (eval_name, eval_result, is_bigger_better)

            y_true: array-like of shape = [n_samples]
                The target values.
            y_pred: array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class)
                The predicted values.
            weight: array-like of shape = [n_samples]
                The weight of samples.
            group: array-like
                Group/query data, used for ranking task.
363
            eval_name: str
364
                The name of evaluation.
365
            eval_result: float
366
                The eval result.
367
            is_bigger_better: bool
368
                Is eval result bigger better, e.g. AUC is bigger_better.
369

370
371
        For multi-class task, the y_pred is group by class_id first, then group by row_id.
        If you want to get i-th row y_pred in j-th class, the access way is y_pred[j * num_data + i].
wxchan's avatar
wxchan committed
372
        """
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
        if not hasattr(self, '_objective'):
            self._objective = self.objective
        if self._objective is None:
            if isinstance(self, LGBMRegressor):
                self._objective = "regression"
            elif isinstance(self, LGBMClassifier):
                self._objective = "binary"
            elif isinstance(self, LGBMRanker):
                self._objective = "lambdarank"
            else:
                raise ValueError("Unknown LGBMModel type.")
        if callable(self._objective):
            self._fobj = _objective_function_wrapper(self._objective)
        else:
            self._fobj = None
wxchan's avatar
wxchan committed
388
389
        evals_result = {}
        params = self.get_params()
390
391
392
        # sklearn interface has another naming convention
        params.setdefault('seed', params.pop('random_state'))
        params.setdefault('nthread', params.pop('n_jobs'))
wxchan's avatar
wxchan committed
393
394
395
396
397
        # user can set verbose with kwargs, it has higher priority
        if 'verbose' not in params and self.silent:
            params['verbose'] = -1
        params.pop('silent', None)
        params.pop('n_estimators', None)
398
399
400
401
402
403
        if self._n_classes is not None and self._n_classes > 2:
            params['num_class'] = self._n_classes
        if hasattr(self, '_eval_at'):
            params['ndcg_eval_at'] = self._eval_at
        params['objective'] = self._objective
        if self._fobj:
wxchan's avatar
wxchan committed
404
            params['objective'] = 'None'  # objective = nullptr for unknown objective
wxchan's avatar
wxchan committed
405
406

        if callable(eval_metric):
407
            feval = _eval_function_wrapper(eval_metric)
wxchan's avatar
wxchan committed
408
409
        else:
            feval = None
410
            params['metric'] = eval_metric
wxchan's avatar
wxchan committed
411

412
413
414
415
        if not _IS_PANDAS_INSTALLED or not isinstance(X, pd.DataFrame):
            X, y = _LGBMCheckXY(X, y, accept_sparse=True, force_all_finite=False, ensure_min_samples=2)
            _LGBMCheckConsistentLength(X, y, sample_weight)

416
417
        self._n_features = X.shape[1]

Guolin Ke's avatar
Guolin Ke committed
418
        def _construct_dataset(X, y, sample_weight, init_score, group, params):
Guolin Ke's avatar
Guolin Ke committed
419
            ret = Dataset(X, label=y, max_bin=self.max_bin, weight=sample_weight, group=group, params=params)
Guolin Ke's avatar
Guolin Ke committed
420
421
422
            ret.set_init_score(init_score)
            return ret

Guolin Ke's avatar
Guolin Ke committed
423
        train_set = _construct_dataset(X, y, sample_weight, init_score, group, params)
Guolin Ke's avatar
Guolin Ke committed
424
425
426
427
428
429

        valid_sets = []
        if eval_set is not None:
            if isinstance(eval_set, tuple):
                eval_set = [eval_set]
            for i, valid_data in enumerate(eval_set):
430
                # reduce cost for prediction training data
Guolin Ke's avatar
Guolin Ke committed
431
432
433
                if valid_data[0] is X and valid_data[1] is y:
                    valid_set = train_set
                else:
Tsukasa OMOTO's avatar
Tsukasa OMOTO committed
434
435
436
437
                    def get_meta_data(collection, i):
                        if collection is None:
                            return None
                        elif isinstance(collection, list):
438
                            return collection[i] if len(collection) > i else None
Tsukasa OMOTO's avatar
Tsukasa OMOTO committed
439
440
441
442
443
444
445
                        elif isinstance(collection, dict):
                            return collection.get(i, None)
                        else:
                            raise TypeError('eval_sample_weight, eval_init_score, and eval_group should be dict or list')
                    valid_weight = get_meta_data(eval_sample_weight, i)
                    valid_init_score = get_meta_data(eval_init_score, i)
                    valid_group = get_meta_data(eval_group, i)
Guolin Ke's avatar
Guolin Ke committed
446
                    valid_set = _construct_dataset(valid_data[0], valid_data[1], valid_weight, valid_init_score, valid_group, params)
Guolin Ke's avatar
Guolin Ke committed
447
448
449
                valid_sets.append(valid_set)

        self._Booster = train(params, train_set,
450
                              self.n_estimators, valid_sets=valid_sets, valid_names=eval_names,
wxchan's avatar
wxchan committed
451
                              early_stopping_rounds=early_stopping_rounds,
452
                              evals_result=evals_result, fobj=self._fobj, feval=feval,
Guolin Ke's avatar
Guolin Ke committed
453
                              verbose_eval=verbose, feature_name=feature_name,
454
                              categorical_feature=categorical_feature,
455
                              callbacks=callbacks)
wxchan's avatar
wxchan committed
456
457

        if evals_result:
458
            self._evals_result = evals_result
wxchan's avatar
wxchan committed
459
460

        if early_stopping_rounds is not None:
461
            self._best_iteration = self._Booster.best_iteration
462
463

        self._best_score = self._Booster.best_score
wxchan's avatar
wxchan committed
464
465
466
467

        # free dataset
        self.booster_.free_dataset()
        del train_set, valid_sets
wxchan's avatar
wxchan committed
468
469
        return self

470
    def predict(self, X, raw_score=False, num_iteration=0):
471
        """Return the predicted value for each sample.
wxchan's avatar
wxchan committed
472
473
474

        Parameters
        ----------
475
        X : array-like or sparse matrix of shape = [n_samples, n_features]
wxchan's avatar
wxchan committed
476
            Input features matrix.
477
478
479
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        num_iteration : int, optional (default=0)
wxchan's avatar
wxchan committed
480
481
482
483
            Limit number of iterations in the prediction; defaults to 0 (use all trees).

        Returns
        -------
484
485
        predicted_result : array-like of shape = [n_samples] or shape = [n_samples, n_classes]
            The predicted values.
wxchan's avatar
wxchan committed
486
        """
487
488
        if self._n_features is None:
            raise LGBMNotFittedError("Estimator not fitted, call `fit` before exploiting the model.")
489
490
        if not _IS_PANDAS_INSTALLED or not isinstance(X, pd.DataFrame):
            X = _LGBMCheckArray(X, accept_sparse=True, force_all_finite=False)
491
492
493
494
495
496
        n_features = X.shape[1]
        if self._n_features != n_features:
            raise ValueError("Number of features of the model must "
                             "match the input. Model n_features_ is %s and "
                             "input n_features is %s "
                             % (self._n_features, n_features))
497
        return self.booster_.predict(X, raw_score=raw_score, num_iteration=num_iteration)
wxchan's avatar
wxchan committed
498
499

    def apply(self, X, num_iteration=0):
500
        """Return the predicted leaf every tree for each sample.
wxchan's avatar
wxchan committed
501
502
503

        Parameters
        ----------
504
        X : array-like or sparse matrix of shape = [n_samples, n_features]
wxchan's avatar
wxchan committed
505
            Input features matrix.
506
        num_iteration : int, optional (default=0)
wxchan's avatar
wxchan committed
507
            Limit number of iterations in the prediction; defaults to 0 (use all trees).
wxchan's avatar
wxchan committed
508
509
510

        Returns
        -------
511
512
        X_leaves : array-like of shape = [n_samples, n_trees]
            The predicted leaf every tree for each sample.
wxchan's avatar
wxchan committed
513
        """
514
515
        if self._n_features is None:
            raise LGBMNotFittedError("Estimator not fitted, call `fit` before exploiting the model.")
516
517
        if not _IS_PANDAS_INSTALLED or not isinstance(X, pd.DataFrame):
            X = _LGBMCheckArray(X, accept_sparse=True, force_all_finite=False)
518
519
520
521
522
523
        n_features = X.shape[1]
        if self._n_features != n_features:
            raise ValueError("Number of features of the model must "
                             "match the input. Model n_features_ is %s and "
                             "input n_features is %s "
                             % (self._n_features, n_features))
524
        return self.booster_.predict(X, pred_leaf=True, num_iteration=num_iteration)
wxchan's avatar
wxchan committed
525

526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
    @property
    def n_features_(self):
        """Get the number of features of fitted model."""
        if self._n_features is None:
            raise LGBMNotFittedError('No n_features found. Need to call fit beforehand.')
        return self._n_features

    @property
    def best_score_(self):
        """Get the best score of fitted model."""
        if self._n_features is None:
            raise LGBMNotFittedError('No best_score found. Need to call fit beforehand.')
        return self._best_score

    @property
    def best_iteration_(self):
        """Get the best iteration of fitted model."""
        if self._n_features is None:
            raise LGBMNotFittedError('No best_iteration found. Need to call fit with early_stopping_rounds beforehand.')
        return self._best_iteration

    @property
    def objective_(self):
        """Get the concrete objective used while fitting this model."""
        if self._n_features is None:
            raise LGBMNotFittedError('No objective found. Need to call fit beforehand.')
        return self._objective

554
555
556
557
    @property
    def booster_(self):
        """Get the underlying lightgbm Booster of this model."""
        if self._Booster is None:
558
            raise LGBMNotFittedError('No booster found. Need to call fit beforehand.')
559
        return self._Booster
wxchan's avatar
wxchan committed
560

561
562
563
    @property
    def evals_result_(self):
        """Get the evaluation results."""
564
565
566
        if self._n_features is None:
            raise LGBMNotFittedError('No results found. Need to call fit with eval_set beforehand.')
        return self._evals_result
567
568

    @property
569
    def feature_importances_(self):
570
        """Get feature importances.
571

572
573
574
        Note
        ----
        Feature importance in sklearn interface used to normalize to 1,
575
        it's deprecated after 2.0.4 and same as Booster.feature_importance() now.
576
        """
577
578
        if self._n_features is None:
            raise LGBMNotFittedError('No feature_importances found. Need to call fit beforehand.')
579
        return self.booster_.feature_importance()
wxchan's avatar
wxchan committed
580

581
    def booster(self):
582
        warnings.warn('The `booster()` method is deprecated and will be removed in 2.0.12 version. '
583
                      'Please use attribute `booster_` instead.', LGBMDeprecationWarning)
584
        return self.booster_
wxchan's avatar
wxchan committed
585

586
    def feature_importance(self):
587
        warnings.warn('The `feature_importance()` method is deprecated and will be removed in 2.0.12 version. '
588
                      'Please use attribute `feature_importances_` instead.', LGBMDeprecationWarning)
589
        return self.feature_importances_
wxchan's avatar
wxchan committed
590

wxchan's avatar
wxchan committed
591

592
593
class LGBMRegressor(LGBMModel, _LGBMRegressorBase):
    """LightGBM regressor."""
wxchan's avatar
wxchan committed
594

Guolin Ke's avatar
Guolin Ke committed
595
596
    def fit(self, X, y,
            sample_weight=None, init_score=None,
597
            eval_set=None, eval_names=None, eval_sample_weight=None,
598
599
            eval_init_score=None, eval_metric="l2", early_stopping_rounds=None,
            verbose=True, feature_name='auto', categorical_feature='auto', callbacks=None):
600
601
602

        super(LGBMRegressor, self).fit(X, y, sample_weight=sample_weight,
                                       init_score=init_score, eval_set=eval_set,
603
                                       eval_names=eval_names,
604
605
606
607
608
                                       eval_sample_weight=eval_sample_weight,
                                       eval_init_score=eval_init_score,
                                       eval_metric=eval_metric,
                                       early_stopping_rounds=early_stopping_rounds,
                                       verbose=verbose, feature_name=feature_name,
609
                                       categorical_feature=categorical_feature,
Guolin Ke's avatar
Guolin Ke committed
610
                                       callbacks=callbacks)
Guolin Ke's avatar
Guolin Ke committed
611
612
        return self

613
614
615
616
    base_doc = LGBMModel.fit.__doc__
    fit.__doc__ = (base_doc[:base_doc.find('eval_metric :')] +
                   'eval_metric : string, list of strings, callable or None, optional (default="l2")\n' +
                   base_doc[base_doc.find('            If string, it should be a built-in evaluation metric to use.'):])
wxchan's avatar
wxchan committed
617

618
619
620

class LGBMClassifier(LGBMModel, _LGBMClassifierBase):
    """LightGBM classifier."""
wxchan's avatar
wxchan committed
621

Guolin Ke's avatar
Guolin Ke committed
622
623
    def fit(self, X, y,
            sample_weight=None, init_score=None,
624
            eval_set=None, eval_names=None, eval_sample_weight=None,
625
            eval_init_score=None, eval_metric="logloss",
wxchan's avatar
wxchan committed
626
            early_stopping_rounds=None, verbose=True,
627
628
629
            feature_name='auto', categorical_feature='auto', callbacks=None):
        _LGBMCheckClassificationTargets(y)
        self._le = _LGBMLabelEncoder().fit(y)
630
        _y = self._le.transform(y)
631

632
633
634
        self._classes = self._le.classes_
        self._n_classes = len(self._classes)
        if self._n_classes > 2:
wxchan's avatar
wxchan committed
635
            # Switch to using a multiclass objective in the underlying LGBM instance
636
            self._objective = "multiclass"
wxchan's avatar
wxchan committed
637
            if eval_metric == 'logloss' or eval_metric == 'binary_logloss':
wxchan's avatar
wxchan committed
638
                eval_metric = "multi_logloss"
wxchan's avatar
wxchan committed
639
640
641
642
643
644
645
            elif eval_metric == 'error' or eval_metric == 'binary_error':
                eval_metric = "multi_error"
        else:
            if eval_metric == 'logloss' or eval_metric == 'multi_logloss':
                eval_metric = 'binary_logloss'
            elif eval_metric == 'error' or eval_metric == 'multi_error':
                eval_metric = 'binary_error'
wxchan's avatar
wxchan committed
646
647

        if eval_set is not None:
648
649
650
651
652
653
654
            if isinstance(eval_set, tuple):
                eval_set = [eval_set]
            for i, (valid_x, valid_y) in enumerate(eval_set):
                if valid_x is X and valid_y is y:
                    eval_set[i] = (valid_x, _y)
                else:
                    eval_set[i] = (valid_x, self._le.transform(valid_y))
655

656
        super(LGBMClassifier, self).fit(X, _y, sample_weight=sample_weight,
657
                                        init_score=init_score, eval_set=eval_set,
658
                                        eval_names=eval_names,
659
660
661
662
663
                                        eval_sample_weight=eval_sample_weight,
                                        eval_init_score=eval_init_score,
                                        eval_metric=eval_metric,
                                        early_stopping_rounds=early_stopping_rounds,
                                        verbose=verbose, feature_name=feature_name,
664
                                        categorical_feature=categorical_feature,
665
                                        callbacks=callbacks)
wxchan's avatar
wxchan committed
666
667
        return self

668
669
670
671
672
    base_doc = LGBMModel.fit.__doc__
    fit.__doc__ = (base_doc[:base_doc.find('eval_metric :')] +
                   'eval_metric : string, list of strings, callable or None, optional (default="logloss")\n' +
                   base_doc[base_doc.find('            If string, it should be a built-in evaluation metric to use.'):])

673
674
675
676
    def predict(self, X, raw_score=False, num_iteration=0):
        class_probs = self.predict_proba(X, raw_score, num_iteration)
        class_index = np.argmax(class_probs, axis=1)
        return self._le.inverse_transform(class_index)
wxchan's avatar
wxchan committed
677

678
    def predict_proba(self, X, raw_score=False, num_iteration=0):
679
        """Return the predicted probability for each class for each sample.
wxchan's avatar
wxchan committed
680
681
682

        Parameters
        ----------
683
        X : array-like or sparse matrix of shape = [n_samples, n_features]
wxchan's avatar
wxchan committed
684
            Input features matrix.
685
686
687
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        num_iteration : int, optional (default=0)
wxchan's avatar
wxchan committed
688
689
690
691
            Limit number of iterations in the prediction; defaults to 0 (use all trees).

        Returns
        -------
692
693
        predicted_probability : array-like of shape = [n_samples, n_classes]
            The predicted probability for each class for each sample.
wxchan's avatar
wxchan committed
694
        """
695
696
        if self._n_features is None:
            raise LGBMNotFittedError("Estimator not fitted, call `fit` before exploiting the model.")
697
698
        if not _IS_PANDAS_INSTALLED or not isinstance(X, pd.DataFrame):
            X = _LGBMCheckArray(X, accept_sparse=True, force_all_finite=False)
699
700
701
702
703
704
        n_features = X.shape[1]
        if self._n_features != n_features:
            raise ValueError("Number of features of the model must "
                             "match the input. Model n_features_ is %s and "
                             "input n_features is %s "
                             % (self._n_features, n_features))
705
        class_probs = self.booster_.predict(X, raw_score=raw_score, num_iteration=num_iteration)
706
        if self._n_classes > 2:
wxchan's avatar
wxchan committed
707
708
            return class_probs
        else:
709
710
711
712
            return np.vstack((1. - class_probs, class_probs)).transpose()

    @property
    def classes_(self):
713
714
715
716
        """Get the class label array."""
        if self._classes is None:
            raise LGBMNotFittedError('No classes found. Need to call fit beforehand.')
        return self._classes
717
718
719

    @property
    def n_classes_(self):
720
721
722
723
        """Get the number of classes."""
        if self._n_classes is None:
            raise LGBMNotFittedError('No classes found. Need to call fit beforehand.')
        return self._n_classes
wxchan's avatar
wxchan committed
724

wxchan's avatar
wxchan committed
725

wxchan's avatar
wxchan committed
726
class LGBMRanker(LGBMModel):
727
    """LightGBM ranker."""
wxchan's avatar
wxchan committed
728

Guolin Ke's avatar
Guolin Ke committed
729
    def fit(self, X, y,
730
            sample_weight=None, init_score=None, group=None,
731
            eval_set=None, eval_names=None, eval_sample_weight=None,
732
733
734
735
            eval_init_score=None, eval_group=None, eval_metric='ndcg',
            eval_at=[1], early_stopping_rounds=None, verbose=True,
            feature_name='auto', categorical_feature='auto', callbacks=None):
        # check group data
Guolin Ke's avatar
Guolin Ke committed
736
        if group is None:
737
            raise ValueError("Should set group for ranking task")
wxchan's avatar
wxchan committed
738
739

        if eval_set is not None:
Guolin Ke's avatar
Guolin Ke committed
740
            if eval_group is None:
741
                raise ValueError("Eval_group cannot be None when eval_set is not None")
Guolin Ke's avatar
Guolin Ke committed
742
            elif len(eval_group) != len(eval_set):
743
                raise ValueError("Length of eval_group should be equal to eval_set")
wxchan's avatar
wxchan committed
744
            elif (isinstance(eval_group, dict) and any(i not in eval_group or eval_group[i] is None for i in range_(len(eval_group)))) \
wxchan's avatar
wxchan committed
745
                    or (isinstance(eval_group, list) and any(group is None for group in eval_group)):
746
747
                raise ValueError("Should set group for all eval datasets for ranking task; "
                                 "if you use dict, the index should start from 0")
748

749
        self._eval_at = eval_at
750
751
        super(LGBMRanker, self).fit(X, y, sample_weight=sample_weight,
                                    init_score=init_score, group=group,
752
753
                                    eval_set=eval_set, eval_names=eval_names,
                                    eval_sample_weight=eval_sample_weight,
754
755
756
757
                                    eval_init_score=eval_init_score, eval_group=eval_group,
                                    eval_metric=eval_metric,
                                    early_stopping_rounds=early_stopping_rounds,
                                    verbose=verbose, feature_name=feature_name,
758
                                    categorical_feature=categorical_feature,
759
                                    callbacks=callbacks)
wxchan's avatar
wxchan committed
760
        return self
761
762
763
764
765
766
767
768

    base_doc = LGBMModel.fit.__doc__
    fit.__doc__ = (base_doc[:base_doc.find('eval_metric :')] +
                   'eval_metric : string, list of strings, callable or None, optional (default="ndcg")\n' +
                   base_doc[base_doc.find('            If string, it should be a built-in evaluation metric to use.'):base_doc.find('early_stopping_rounds :')] +
                   'eval_at : list of int, optional (default=[1])\n'
                   '            The evaluation positions of NDCG.\n' +
                   base_doc[base_doc.find('        early_stopping_rounds :'):])