"vscode:/vscode.git/clone" did not exist on "2e98916fbcdadd6d8d569b9c00615695f7f9d735"
sklearn.py 36.3 KB
Newer Older
wxchan's avatar
wxchan committed
1
# coding: utf-8
2
# pylint: disable = invalid-name, W0105, C0111, C0301
wxchan's avatar
wxchan committed
3
4
"""Scikit-Learn Wrapper interface for LightGBM."""
from __future__ import absolute_import
5

wxchan's avatar
wxchan committed
6
import numpy as np
7
import warnings
8
9
10
11
12
try:
    import pandas as pd
    _IS_PANDAS_INSTALLED = True
except ImportError:
    _IS_PANDAS_INSTALLED = False
13

wxchan's avatar
wxchan committed
14
from .basic import Dataset, LightGBMError
15
from .compat import (SKLEARN_INSTALLED, _LGBMClassifierBase,
16
17
                     LGBMNotFittedError, _LGBMLabelEncoder, _LGBMModelBase,
                     _LGBMRegressorBase, _LGBMCheckXY, _LGBMCheckArray, _LGBMCheckConsistentLength,
18
19
                     _LGBMCheckClassificationTargets, _LGBMComputeSampleWeight,
                     argc_, range_, LGBMDeprecationWarning)
wxchan's avatar
wxchan committed
20
from .engine import train
21

wxchan's avatar
wxchan committed
22

23
def _objective_function_wrapper(func):
wxchan's avatar
wxchan committed
24
    """Decorate an objective function
25
26
27
28
    Note: for multi-class task, the y_pred is group by class_id first, then group by row_id.
          If you want to get i-th row y_pred in j-th class, the access way is y_pred[j * num_data + i]
          and you should group grad and hess in this way as well.

wxchan's avatar
wxchan committed
29
30
31
    Parameters
    ----------
    func: callable
32
        Expects a callable with signature ``func(y_true, y_pred)`` or ``func(y_true, y_pred, group):
33
34
35
36
37
38
            y_true: array-like of shape = [n_samples]
                The target values.
            y_pred: array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class)
                The predicted values.
            group: array-like
                Group/query data, used for ranking task.
wxchan's avatar
wxchan committed
39
40
41
42
43
44
45

    Returns
    -------
    new_func: callable
        The new objective function as expected by ``lightgbm.engine.train``.
        The signature is ``new_func(preds, dataset)``:

46
47
        preds: array-like of shape = [n_samples] or shape = [n_samples * n_classes]
            The predicted values.
wxchan's avatar
wxchan committed
48
49
        dataset: ``dataset``
            The training set from which the labels will be extracted using
50
            ``dataset.get_label()``.
wxchan's avatar
wxchan committed
51
52
53
54
    """
    def inner(preds, dataset):
        """internal function"""
        labels = dataset.get_label()
wxchan's avatar
wxchan committed
55
        argc = argc_(func)
56
57
58
59
60
        if argc == 2:
            grad, hess = func(labels, preds)
        elif argc == 3:
            grad, hess = func(labels, preds, dataset.get_group())
        else:
wxchan's avatar
wxchan committed
61
            raise TypeError("Self-defined objective function should have 2 or 3 arguments, got %d" % argc)
wxchan's avatar
wxchan committed
62
63
64
65
66
67
68
69
70
71
72
        """weighted for objective"""
        weight = dataset.get_weight()
        if weight is not None:
            """only one class"""
            if len(weight) == len(grad):
                grad = np.multiply(grad, weight)
                hess = np.multiply(hess, weight)
            else:
                num_data = len(weight)
                num_class = len(grad) // num_data
                if num_class * num_data != len(grad):
73
                    raise ValueError("Length of grad and hess should equal to num_class * num_data")
wxchan's avatar
wxchan committed
74
75
                for k in range_(num_class):
                    for i in range_(num_data):
wxchan's avatar
wxchan committed
76
77
78
79
80
81
                        idx = k * num_data + i
                        grad[idx] *= weight[i]
                        hess[idx] *= weight[i]
        return grad, hess
    return inner

wxchan's avatar
wxchan committed
82

83
84
def _eval_function_wrapper(func):
    """Decorate an eval function
85
86
87
    Note: for multi-class task, the y_pred is group by class_id first, then group by row_id.
          If you want to get i-th row y_pred in j-th class, the access way is y_pred[j * num_data + i].

88
89
90
    Parameters
    ----------
    func: callable
91
92
93
94
95
        Expects a callable with following functions:
            ``func(y_true, y_pred)``,
            ``func(y_true, y_pred, weight)``
         or ``func(y_true, y_pred, weight, group)``
            and return (eval_name->str, eval_result->float, is_bigger_better->Bool):
96

97
98
99
100
101
102
103
104
            y_true: array-like of shape = [n_samples]
                The target values.
            y_pred: array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class)
                The predicted values.
            weight: array_like of shape = [n_samples]
                The weight of samples.
            group: array-like
                Group/query data, used for ranking task.
105
106
107
108
109
110
111

    Returns
    -------
    new_func: callable
        The new eval function as expected by ``lightgbm.engine.train``.
        The signature is ``new_func(preds, dataset)``:

112
113
        preds: array-like of shape = [n_samples] or shape = [n_samples * n_classes]
            The predicted values.
114
115
        dataset: ``dataset``
            The training set from which the labels will be extracted using
116
            ``dataset.get_label()``.
117
118
119
120
    """
    def inner(preds, dataset):
        """internal function"""
        labels = dataset.get_label()
wxchan's avatar
wxchan committed
121
        argc = argc_(func)
122
123
124
125
126
127
128
        if argc == 2:
            return func(labels, preds)
        elif argc == 3:
            return func(labels, preds, dataset.get_weight())
        elif argc == 4:
            return func(labels, preds, dataset.get_weight(), dataset.get_group())
        else:
wxchan's avatar
wxchan committed
129
            raise TypeError("Self-defined eval function should have 2, 3 or 4 arguments, got %d" % argc)
130
131
    return inner

wxchan's avatar
wxchan committed
132

133
134
class LGBMModel(_LGBMModelBase):
    """Implementation of the scikit-learn API for LightGBM."""
wxchan's avatar
wxchan committed
135

136
    def __init__(self, boosting_type="gbdt", num_leaves=31, max_depth=-1,
137
                 learning_rate=0.1, n_estimators=100,
138
                 subsample_for_bin=200000, objective=None, class_weight=None,
139
                 min_split_gain=0., min_child_weight=1e-3, min_child_samples=20,
140
                 subsample=1., subsample_freq=1, colsample_bytree=1.,
141
                 reg_alpha=0., reg_lambda=0., random_state=None,
142
                 n_jobs=-1, silent=True, **kwargs):
143
        """Construct a gradient boosting model.
wxchan's avatar
wxchan committed
144
145
146

        Parameters
        ----------
147
148
149
150
151
152
        boosting_type : string, optional (default="gbdt")
            'gbdt', traditional Gradient Boosting Decision Tree.
            'dart', Dropouts meet Multiple Additive Regression Trees.
            'goss', Gradient-based One-Side Sampling.
            'rf', Random Forest.
        num_leaves : int, optional (default=31)
wxchan's avatar
wxchan committed
153
            Maximum tree leaves for base learners.
154
        max_depth : int, optional (default=-1)
wxchan's avatar
wxchan committed
155
            Maximum tree depth for base learners, -1 means no limit.
156
        learning_rate : float, optional (default=0.1)
157
            Boosting learning rate.
158
        n_estimators : int, optional (default=100)
wxchan's avatar
wxchan committed
159
            Number of boosted trees to fit.
160
        subsample_for_bin : int, optional (default=50000)
wxchan's avatar
wxchan committed
161
            Number of samples for constructing bins.
162
        objective : string, callable or None, optional (default=None)
wxchan's avatar
wxchan committed
163
164
            Specify the learning task and the corresponding learning objective or
            a custom objective function to be used (see note below).
165
            default: 'regression' for LGBMRegressor, 'binary' or 'multiclass' for LGBMClassifier, 'lambdarank' for LGBMRanker.
166
167
168
169
170
171
172
173
174
        class_weight : dict, 'balanced' or None, optional (default=None)
            Weights associated with classes in the form ``{class_label: weight}``.
            Use this parameter only for multi-class classification task;
            for binary classification task you may use ``is_unbalance`` or ``scale_pos_weight`` parameters.
            The 'balanced' mode uses the values of y to automatically adjust weights
            inversely proportional to class frequencies in the input data as ``n_samples / (n_classes * np.bincount(y))``.
            If None, all classes are supposed to have weight one.
            Note that these weights will be multiplied with ``sample_weight`` (passed through the fit method)
            if ``sample_weight`` is specified.
175
        min_split_gain : float, optional (default=0.)
wxchan's avatar
wxchan committed
176
            Minimum loss reduction required to make a further partition on a leaf node of the tree.
177
        min_child_weight : float, optional (default=1e-3)
178
            Minimum sum of instance weight(hessian) needed in a child(leaf).
179
        min_child_samples : int, optional (default=20)
180
            Minimum number of data need in a child(leaf).
181
        subsample : float, optional (default=1.)
wxchan's avatar
wxchan committed
182
            Subsample ratio of the training instance.
183
184
185
        subsample_freq : int, optional (default=1)
            Frequence of subsample, <=0 means no enable.
        colsample_bytree : float, optional (default=1.)
wxchan's avatar
wxchan committed
186
            Subsample ratio of columns when constructing each tree.
187
        reg_alpha : float, optional (default=0.)
188
            L1 regularization term on weights.
189
        reg_lambda : float, optional (default=0.)
190
            L2 regularization term on weights.
191
        random_state : int or None, optional (default=None)
wxchan's avatar
wxchan committed
192
            Random number seed.
193
            Will use default seeds in c++ code if set to None.
194
        n_jobs : int, optional (default=-1)
195
            Number of parallel threads.
196
        silent : bool, optional (default=True)
wxchan's avatar
wxchan committed
197
            Whether to print messages while running boosting.
wxchan's avatar
wxchan committed
198
199
        **kwargs : other parameters
            Check http://lightgbm.readthedocs.io/en/latest/Parameters.html for more parameters.
200
201
202

            Note
            ----
203
            \*\*kwargs is not supported in sklearn, it may cause unexpected issues.
wxchan's avatar
wxchan committed
204

205
206
207
208
209
210
211
212
213
        Attributes
        ----------
        n_features_ : int
            The number of features of fitted model.
        classes_ : array of shape = [n_classes]
            The class label array (only for classification problem).
        n_classes_ : int
            The number of classes (only for classification problem).
        best_score_ : dict or None
214
            The best score of fitted model.
215
        best_iteration_ : int or None
216
            The best iteration of fitted model if ``early_stopping_rounds`` has been specified.
217
218
219
220
221
        objective_ : string or callable
            The concrete objective used while fitting this model.
        booster_ : Booster
            The underlying Booster of this model.
        evals_result_ : dict or None
222
            The evaluation results if ``early_stopping_rounds`` has been specified.
223
224
225
        feature_importances_ : array of shape = [n_features]
            The feature importances (the higher, the more important the feature).

wxchan's avatar
wxchan committed
226
227
228
229
        Note
        ----
        A custom objective function can be provided for the ``objective``
        parameter. In this case, it should have the signature
230
231
        ``objective(y_true, y_pred) -> grad, hess`` or
        ``objective(y_true, y_pred, group) -> grad, hess``:
wxchan's avatar
wxchan committed
232

233
            y_true: array-like of shape = [n_samples]
234
                The target values.
235
            y_pred: array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
236
                The predicted values.
237
238
239
            group: array-like
                Group/query data, used for ranking task.
            grad: array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
wxchan's avatar
wxchan committed
240
                The value of the gradient for each sample point.
241
            hess: array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
242
                The value of the second derivative for each sample point.
wxchan's avatar
wxchan committed
243

244
245
246
        For multi-class task, the y_pred is group by class_id first, then group by row_id.
        If you want to get i-th row y_pred in j-th class, the access way is y_pred[j * num_data + i]
        and you should group grad and hess in this way as well.
wxchan's avatar
wxchan committed
247
        """
wxchan's avatar
wxchan committed
248
        if not SKLEARN_INSTALLED:
249
            raise LightGBMError('Scikit-learn is required for this module')
wxchan's avatar
wxchan committed
250

251
        self.boosting_type = boosting_type
252
        self.objective = objective
wxchan's avatar
wxchan committed
253
254
255
256
        self.num_leaves = num_leaves
        self.max_depth = max_depth
        self.learning_rate = learning_rate
        self.n_estimators = n_estimators
wxchan's avatar
wxchan committed
257
        self.subsample_for_bin = subsample_for_bin
wxchan's avatar
wxchan committed
258
259
260
261
262
263
264
265
        self.min_split_gain = min_split_gain
        self.min_child_weight = min_child_weight
        self.min_child_samples = min_child_samples
        self.subsample = subsample
        self.subsample_freq = subsample_freq
        self.colsample_bytree = colsample_bytree
        self.reg_alpha = reg_alpha
        self.reg_lambda = reg_lambda
266
267
        self.random_state = random_state
        self.n_jobs = n_jobs
wxchan's avatar
wxchan committed
268
        self.silent = silent
wxchan's avatar
wxchan committed
269
        self._Booster = None
270
271
272
273
        self._evals_result = None
        self._best_score = None
        self._best_iteration = None
        self._other_params = {}
274
        self._objective = objective
275
        self.class_weight = class_weight
276
277
278
        self._n_features = None
        self._classes = None
        self._n_classes = None
279
        self.set_params(**kwargs)
wxchan's avatar
wxchan committed
280
281
282

    def get_params(self, deep=True):
        params = super(LGBMModel, self).get_params(deep=deep)
283
        params.update(self._other_params)
wxchan's avatar
wxchan committed
284
285
286
287
288
289
        return params

    # minor change to support `**kwargs`
    def set_params(self, **params):
        for key, value in params.items():
            setattr(self, key, value)
290
291
            if hasattr(self, '_' + key):
                setattr(self, '_' + key, value)
292
            self._other_params[key] = value
wxchan's avatar
wxchan committed
293
        return self
wxchan's avatar
wxchan committed
294

Guolin Ke's avatar
Guolin Ke committed
295
    def fit(self, X, y,
296
            sample_weight=None, init_score=None, group=None,
297
            eval_set=None, eval_names=None, eval_sample_weight=None,
298
299
300
            eval_class_weight=None, eval_init_score=None, eval_group=None,
            eval_metric=None, early_stopping_rounds=None, verbose=True,
            feature_name='auto', categorical_feature='auto', callbacks=None):
301
        """Build a gradient boosting model from the training set (X, y).
wxchan's avatar
wxchan committed
302
303
304

        Parameters
        ----------
305
306
307
308
309
310
311
312
313
314
315
316
        X : array-like or sparse matrix of shape = [n_samples, n_features]
            Input feature matrix.
        y : array-like of shape = [n_samples]
            The target values (class labels in classification, real numbers in regression).
        sample_weight : array-like of shape = [n_samples] or None, optional (default=None)
            Weights of training data.
        init_score : array-like of shape = [n_samples] or None, optional (default=None)
            Init score of training data.
        group : array-like of shape = [n_samples] or None, optional (default=None)
            Group data of training data.
        eval_set : list or None, optional (default=None)
            A list of (X, y) tuple pairs to use as a validation sets for early-stopping.
317
        eval_names : list of strings or None, optional (default=None)
318
319
320
            Names of eval_set.
        eval_sample_weight : list of arrays or None, optional (default=None)
            Weights of eval data.
321
322
        eval_class_weight : list or None, optional (default=None)
            Class weights of eval data.
323
324
325
326
327
328
329
330
331
        eval_init_score : list of arrays or None, optional (default=None)
            Init score of eval data.
        eval_group : list of arrays or None, optional (default=None)
            Group data of eval data.
        eval_metric : string, list of strings, callable or None, optional (default=None)
            If string, it should be a built-in evaluation metric to use.
            If callable, it should be a custom evaluation metric, see note for more details.
        early_stopping_rounds : int or None, optional (default=None)
            Activates early stopping. The model will train until the validation score stops improving.
332
            Validation error needs to decrease at least every ``early_stopping_rounds`` round(s)
333
334
335
336
337
338
339
340
341
            to continue training.
        verbose : bool, optional (default=True)
            If True and an evaluation set is used, writes the evaluation progress.
        feature_name : list of strings or 'auto', optional (default="auto")
            Feature names.
            If 'auto' and data is pandas DataFrame, data columns names are used.
        categorical_feature : list of strings or int, or 'auto', optional (default="auto")
            Categorical features.
            If list of int, interpreted as indices.
342
            If list of strings, interpreted as feature names (need to specify ``feature_name`` as well).
343
344
            If 'auto' and data is pandas DataFrame, pandas categorical columns are used.
        callbacks : list of callback functions or None, optional (default=None)
345
            List of callback functions that are applied at each iteration.
346
            See Callbacks in Python API for more information.
347

348
349
350
351
352
        Returns
        -------
        self : object
            Returns self.

353
354
        Note
        ----
wxchan's avatar
wxchan committed
355
        Custom eval function expects a callable with following functions:
356
357
358
359
360
361
362
363
364
365
366
367
368
        ``func(y_true, y_pred)``, ``func(y_true, y_pred, weight)`` or
        ``func(y_true, y_pred, weight, group)``.
        Returns (eval_name, eval_result, is_bigger_better) or
        list of (eval_name, eval_result, is_bigger_better)

            y_true: array-like of shape = [n_samples]
                The target values.
            y_pred: array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class)
                The predicted values.
            weight: array-like of shape = [n_samples]
                The weight of samples.
            group: array-like
                Group/query data, used for ranking task.
369
            eval_name: str
370
                The name of evaluation.
371
            eval_result: float
372
                The eval result.
373
            is_bigger_better: bool
374
                Is eval result bigger better, e.g. AUC is bigger_better.
375

376
377
        For multi-class task, the y_pred is group by class_id first, then group by row_id.
        If you want to get i-th row y_pred in j-th class, the access way is y_pred[j * num_data + i].
wxchan's avatar
wxchan committed
378
        """
379
380
381
382
383
384
385
386
387
388
389
390
391
        if self._objective is None:
            if isinstance(self, LGBMRegressor):
                self._objective = "regression"
            elif isinstance(self, LGBMClassifier):
                self._objective = "binary"
            elif isinstance(self, LGBMRanker):
                self._objective = "lambdarank"
            else:
                raise ValueError("Unknown LGBMModel type.")
        if callable(self._objective):
            self._fobj = _objective_function_wrapper(self._objective)
        else:
            self._fobj = None
wxchan's avatar
wxchan committed
392
393
        evals_result = {}
        params = self.get_params()
394
395
396
        # sklearn interface has another naming convention
        params.setdefault('seed', params.pop('random_state'))
        params.setdefault('nthread', params.pop('n_jobs'))
wxchan's avatar
wxchan committed
397
398
399
400
401
        # user can set verbose with kwargs, it has higher priority
        if 'verbose' not in params and self.silent:
            params['verbose'] = -1
        params.pop('silent', None)
        params.pop('n_estimators', None)
402
        params.pop('class_weight', None)
403
404
405
406
407
408
        if self._n_classes is not None and self._n_classes > 2:
            params['num_class'] = self._n_classes
        if hasattr(self, '_eval_at'):
            params['ndcg_eval_at'] = self._eval_at
        params['objective'] = self._objective
        if self._fobj:
wxchan's avatar
wxchan committed
409
            params['objective'] = 'None'  # objective = nullptr for unknown objective
wxchan's avatar
wxchan committed
410
411

        if callable(eval_metric):
412
            feval = _eval_function_wrapper(eval_metric)
wxchan's avatar
wxchan committed
413
414
        else:
            feval = None
415
            params['metric'] = eval_metric
wxchan's avatar
wxchan committed
416

417
418
419
420
        if not _IS_PANDAS_INSTALLED or not isinstance(X, pd.DataFrame):
            X, y = _LGBMCheckXY(X, y, accept_sparse=True, force_all_finite=False, ensure_min_samples=2)
            _LGBMCheckConsistentLength(X, y, sample_weight)

421
422
423
424
425
426
        class_sample_weight = _LGBMComputeSampleWeight(self.class_weight, y)
        if sample_weight is None or len(sample_weight) == 0:
            sample_weight = class_sample_weight
        else:
            sample_weight = np.multiply(sample_weight, class_sample_weight)

427
428
        self._n_features = X.shape[1]

Guolin Ke's avatar
Guolin Ke committed
429
        def _construct_dataset(X, y, sample_weight, init_score, group, params):
430
            ret = Dataset(X, label=y, weight=sample_weight, group=group, params=params)
Guolin Ke's avatar
Guolin Ke committed
431
432
433
            ret.set_init_score(init_score)
            return ret

Guolin Ke's avatar
Guolin Ke committed
434
        train_set = _construct_dataset(X, y, sample_weight, init_score, group, params)
Guolin Ke's avatar
Guolin Ke committed
435
436
437
438
439
440

        valid_sets = []
        if eval_set is not None:
            if isinstance(eval_set, tuple):
                eval_set = [eval_set]
            for i, valid_data in enumerate(eval_set):
441
                # reduce cost for prediction training data
Guolin Ke's avatar
Guolin Ke committed
442
443
444
                if valid_data[0] is X and valid_data[1] is y:
                    valid_set = train_set
                else:
Tsukasa OMOTO's avatar
Tsukasa OMOTO committed
445
446
447
448
                    def get_meta_data(collection, i):
                        if collection is None:
                            return None
                        elif isinstance(collection, list):
449
                            return collection[i] if len(collection) > i else None
Tsukasa OMOTO's avatar
Tsukasa OMOTO committed
450
451
452
                        elif isinstance(collection, dict):
                            return collection.get(i, None)
                        else:
453
                            raise TypeError('eval_sample_weight, eval_class_weight, eval_init_score, and eval_group should be dict or list')
Tsukasa OMOTO's avatar
Tsukasa OMOTO committed
454
                    valid_weight = get_meta_data(eval_sample_weight, i)
455
456
457
458
459
                    valid_class_sample_weight = _LGBMComputeSampleWeight(get_meta_data(eval_class_weight, i), valid_data[1])
                    if valid_weight is None or len(valid_weight) == 0:
                        valid_weight = valid_class_sample_weight
                    else:
                        valid_weight = np.multiply(valid_weight, valid_class_sample_weight)
Tsukasa OMOTO's avatar
Tsukasa OMOTO committed
460
461
                    valid_init_score = get_meta_data(eval_init_score, i)
                    valid_group = get_meta_data(eval_group, i)
Guolin Ke's avatar
Guolin Ke committed
462
                    valid_set = _construct_dataset(valid_data[0], valid_data[1], valid_weight, valid_init_score, valid_group, params)
Guolin Ke's avatar
Guolin Ke committed
463
464
465
                valid_sets.append(valid_set)

        self._Booster = train(params, train_set,
466
                              self.n_estimators, valid_sets=valid_sets, valid_names=eval_names,
wxchan's avatar
wxchan committed
467
                              early_stopping_rounds=early_stopping_rounds,
468
                              evals_result=evals_result, fobj=self._fobj, feval=feval,
Guolin Ke's avatar
Guolin Ke committed
469
                              verbose_eval=verbose, feature_name=feature_name,
470
                              categorical_feature=categorical_feature,
471
                              callbacks=callbacks)
wxchan's avatar
wxchan committed
472
473

        if evals_result:
474
            self._evals_result = evals_result
wxchan's avatar
wxchan committed
475
476

        if early_stopping_rounds is not None:
477
            self._best_iteration = self._Booster.best_iteration
478
479

        self._best_score = self._Booster.best_score
wxchan's avatar
wxchan committed
480
481
482
483

        # free dataset
        self.booster_.free_dataset()
        del train_set, valid_sets
wxchan's avatar
wxchan committed
484
485
        return self

486
    def predict(self, X, raw_score=False, num_iteration=0):
487
        """Return the predicted value for each sample.
wxchan's avatar
wxchan committed
488
489
490

        Parameters
        ----------
491
        X : array-like or sparse matrix of shape = [n_samples, n_features]
wxchan's avatar
wxchan committed
492
            Input features matrix.
493
494
495
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        num_iteration : int, optional (default=0)
wxchan's avatar
wxchan committed
496
497
498
499
            Limit number of iterations in the prediction; defaults to 0 (use all trees).

        Returns
        -------
500
501
        predicted_result : array-like of shape = [n_samples] or shape = [n_samples, n_classes]
            The predicted values.
wxchan's avatar
wxchan committed
502
        """
503
504
        if self._n_features is None:
            raise LGBMNotFittedError("Estimator not fitted, call `fit` before exploiting the model.")
505
506
        if not _IS_PANDAS_INSTALLED or not isinstance(X, pd.DataFrame):
            X = _LGBMCheckArray(X, accept_sparse=True, force_all_finite=False)
507
508
509
510
511
512
        n_features = X.shape[1]
        if self._n_features != n_features:
            raise ValueError("Number of features of the model must "
                             "match the input. Model n_features_ is %s and "
                             "input n_features is %s "
                             % (self._n_features, n_features))
513
        return self.booster_.predict(X, raw_score=raw_score, num_iteration=num_iteration)
wxchan's avatar
wxchan committed
514
515

    def apply(self, X, num_iteration=0):
516
        """Return the predicted leaf every tree for each sample.
wxchan's avatar
wxchan committed
517
518
519

        Parameters
        ----------
520
        X : array-like or sparse matrix of shape = [n_samples, n_features]
wxchan's avatar
wxchan committed
521
            Input features matrix.
522
        num_iteration : int, optional (default=0)
wxchan's avatar
wxchan committed
523
            Limit number of iterations in the prediction; defaults to 0 (use all trees).
wxchan's avatar
wxchan committed
524
525
526

        Returns
        -------
527
528
        X_leaves : array-like of shape = [n_samples, n_trees]
            The predicted leaf every tree for each sample.
wxchan's avatar
wxchan committed
529
        """
530
531
        if self._n_features is None:
            raise LGBMNotFittedError("Estimator not fitted, call `fit` before exploiting the model.")
532
533
        if not _IS_PANDAS_INSTALLED or not isinstance(X, pd.DataFrame):
            X = _LGBMCheckArray(X, accept_sparse=True, force_all_finite=False)
534
535
536
537
538
539
        n_features = X.shape[1]
        if self._n_features != n_features:
            raise ValueError("Number of features of the model must "
                             "match the input. Model n_features_ is %s and "
                             "input n_features is %s "
                             % (self._n_features, n_features))
540
        return self.booster_.predict(X, pred_leaf=True, num_iteration=num_iteration)
wxchan's avatar
wxchan committed
541

542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
    @property
    def n_features_(self):
        """Get the number of features of fitted model."""
        if self._n_features is None:
            raise LGBMNotFittedError('No n_features found. Need to call fit beforehand.')
        return self._n_features

    @property
    def best_score_(self):
        """Get the best score of fitted model."""
        if self._n_features is None:
            raise LGBMNotFittedError('No best_score found. Need to call fit beforehand.')
        return self._best_score

    @property
    def best_iteration_(self):
        """Get the best iteration of fitted model."""
        if self._n_features is None:
            raise LGBMNotFittedError('No best_iteration found. Need to call fit with early_stopping_rounds beforehand.')
        return self._best_iteration

    @property
    def objective_(self):
        """Get the concrete objective used while fitting this model."""
        if self._n_features is None:
            raise LGBMNotFittedError('No objective found. Need to call fit beforehand.')
        return self._objective

570
571
572
573
    @property
    def booster_(self):
        """Get the underlying lightgbm Booster of this model."""
        if self._Booster is None:
574
            raise LGBMNotFittedError('No booster found. Need to call fit beforehand.')
575
        return self._Booster
wxchan's avatar
wxchan committed
576

577
578
579
    @property
    def evals_result_(self):
        """Get the evaluation results."""
580
581
582
        if self._n_features is None:
            raise LGBMNotFittedError('No results found. Need to call fit with eval_set beforehand.')
        return self._evals_result
583
584

    @property
585
    def feature_importances_(self):
586
        """Get feature importances.
587

588
589
590
        Note
        ----
        Feature importance in sklearn interface used to normalize to 1,
591
        it's deprecated after 2.0.4 and same as Booster.feature_importance() now.
592
        """
593
594
        if self._n_features is None:
            raise LGBMNotFittedError('No feature_importances found. Need to call fit beforehand.')
595
        return self.booster_.feature_importance()
wxchan's avatar
wxchan committed
596

wxchan's avatar
wxchan committed
597

598
599
class LGBMRegressor(LGBMModel, _LGBMRegressorBase):
    """LightGBM regressor."""
wxchan's avatar
wxchan committed
600

Guolin Ke's avatar
Guolin Ke committed
601
602
    def fit(self, X, y,
            sample_weight=None, init_score=None,
603
            eval_set=None, eval_names=None, eval_sample_weight=None,
604
605
            eval_init_score=None, eval_metric="l2", early_stopping_rounds=None,
            verbose=True, feature_name='auto', categorical_feature='auto', callbacks=None):
606
607
608

        super(LGBMRegressor, self).fit(X, y, sample_weight=sample_weight,
                                       init_score=init_score, eval_set=eval_set,
609
                                       eval_names=eval_names,
610
611
612
613
614
                                       eval_sample_weight=eval_sample_weight,
                                       eval_init_score=eval_init_score,
                                       eval_metric=eval_metric,
                                       early_stopping_rounds=early_stopping_rounds,
                                       verbose=verbose, feature_name=feature_name,
615
                                       categorical_feature=categorical_feature,
Guolin Ke's avatar
Guolin Ke committed
616
                                       callbacks=callbacks)
Guolin Ke's avatar
Guolin Ke committed
617
618
        return self

619
    base_doc = LGBMModel.fit.__doc__
620
621
622
    fit.__doc__ = (base_doc[:base_doc.find('eval_class_weight :')] +
                   base_doc[base_doc.find('eval_init_score :'):])
    base_doc = fit.__doc__
623
624
625
    fit.__doc__ = (base_doc[:base_doc.find('eval_metric :')] +
                   'eval_metric : string, list of strings, callable or None, optional (default="l2")\n' +
                   base_doc[base_doc.find('            If string, it should be a built-in evaluation metric to use.'):])
wxchan's avatar
wxchan committed
626

627
628
629

class LGBMClassifier(LGBMModel, _LGBMClassifierBase):
    """LightGBM classifier."""
wxchan's avatar
wxchan committed
630

Guolin Ke's avatar
Guolin Ke committed
631
632
    def fit(self, X, y,
            sample_weight=None, init_score=None,
633
            eval_set=None, eval_names=None, eval_sample_weight=None,
634
            eval_class_weight=None, eval_init_score=None, eval_metric="logloss",
wxchan's avatar
wxchan committed
635
            early_stopping_rounds=None, verbose=True,
636
637
638
            feature_name='auto', categorical_feature='auto', callbacks=None):
        _LGBMCheckClassificationTargets(y)
        self._le = _LGBMLabelEncoder().fit(y)
639
        _y = self._le.transform(y)
640

641
642
643
        self._classes = self._le.classes_
        self._n_classes = len(self._classes)
        if self._n_classes > 2:
wxchan's avatar
wxchan committed
644
            # Switch to using a multiclass objective in the underlying LGBM instance
645
646
            if self._objective != "multiclassova" and not callable(self._objective):
                self._objective = "multiclass"
wxchan's avatar
wxchan committed
647
            if eval_metric == 'logloss' or eval_metric == 'binary_logloss':
wxchan's avatar
wxchan committed
648
                eval_metric = "multi_logloss"
wxchan's avatar
wxchan committed
649
650
651
652
653
654
655
            elif eval_metric == 'error' or eval_metric == 'binary_error':
                eval_metric = "multi_error"
        else:
            if eval_metric == 'logloss' or eval_metric == 'multi_logloss':
                eval_metric = 'binary_logloss'
            elif eval_metric == 'error' or eval_metric == 'multi_error':
                eval_metric = 'binary_error'
wxchan's avatar
wxchan committed
656
657

        if eval_set is not None:
658
659
660
661
662
663
664
            if isinstance(eval_set, tuple):
                eval_set = [eval_set]
            for i, (valid_x, valid_y) in enumerate(eval_set):
                if valid_x is X and valid_y is y:
                    eval_set[i] = (valid_x, _y)
                else:
                    eval_set[i] = (valid_x, self._le.transform(valid_y))
665

666
        super(LGBMClassifier, self).fit(X, _y, sample_weight=sample_weight,
667
                                        init_score=init_score, eval_set=eval_set,
668
                                        eval_names=eval_names,
669
                                        eval_sample_weight=eval_sample_weight,
670
                                        eval_class_weight=eval_class_weight,
671
672
673
674
                                        eval_init_score=eval_init_score,
                                        eval_metric=eval_metric,
                                        early_stopping_rounds=early_stopping_rounds,
                                        verbose=verbose, feature_name=feature_name,
675
                                        categorical_feature=categorical_feature,
676
                                        callbacks=callbacks)
wxchan's avatar
wxchan committed
677
678
        return self

679
680
681
682
683
    base_doc = LGBMModel.fit.__doc__
    fit.__doc__ = (base_doc[:base_doc.find('eval_metric :')] +
                   'eval_metric : string, list of strings, callable or None, optional (default="logloss")\n' +
                   base_doc[base_doc.find('            If string, it should be a built-in evaluation metric to use.'):])

684
685
686
687
    def predict(self, X, raw_score=False, num_iteration=0):
        class_probs = self.predict_proba(X, raw_score, num_iteration)
        class_index = np.argmax(class_probs, axis=1)
        return self._le.inverse_transform(class_index)
wxchan's avatar
wxchan committed
688

689
    def predict_proba(self, X, raw_score=False, num_iteration=0):
690
        """Return the predicted probability for each class for each sample.
wxchan's avatar
wxchan committed
691
692
693

        Parameters
        ----------
694
        X : array-like or sparse matrix of shape = [n_samples, n_features]
wxchan's avatar
wxchan committed
695
            Input features matrix.
696
697
698
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        num_iteration : int, optional (default=0)
wxchan's avatar
wxchan committed
699
700
701
702
            Limit number of iterations in the prediction; defaults to 0 (use all trees).

        Returns
        -------
703
704
        predicted_probability : array-like of shape = [n_samples, n_classes]
            The predicted probability for each class for each sample.
wxchan's avatar
wxchan committed
705
        """
706
707
        if self._n_features is None:
            raise LGBMNotFittedError("Estimator not fitted, call `fit` before exploiting the model.")
708
709
        if not _IS_PANDAS_INSTALLED or not isinstance(X, pd.DataFrame):
            X = _LGBMCheckArray(X, accept_sparse=True, force_all_finite=False)
710
711
712
713
714
715
        n_features = X.shape[1]
        if self._n_features != n_features:
            raise ValueError("Number of features of the model must "
                             "match the input. Model n_features_ is %s and "
                             "input n_features is %s "
                             % (self._n_features, n_features))
716
        class_probs = self.booster_.predict(X, raw_score=raw_score, num_iteration=num_iteration)
717
        if self._n_classes > 2:
wxchan's avatar
wxchan committed
718
719
            return class_probs
        else:
720
721
722
723
            return np.vstack((1. - class_probs, class_probs)).transpose()

    @property
    def classes_(self):
724
725
726
727
        """Get the class label array."""
        if self._classes is None:
            raise LGBMNotFittedError('No classes found. Need to call fit beforehand.')
        return self._classes
728
729
730

    @property
    def n_classes_(self):
731
732
733
734
        """Get the number of classes."""
        if self._n_classes is None:
            raise LGBMNotFittedError('No classes found. Need to call fit beforehand.')
        return self._n_classes
wxchan's avatar
wxchan committed
735

wxchan's avatar
wxchan committed
736

wxchan's avatar
wxchan committed
737
class LGBMRanker(LGBMModel):
738
    """LightGBM ranker."""
wxchan's avatar
wxchan committed
739

Guolin Ke's avatar
Guolin Ke committed
740
    def fit(self, X, y,
741
            sample_weight=None, init_score=None, group=None,
742
            eval_set=None, eval_names=None, eval_sample_weight=None,
743
744
745
746
            eval_init_score=None, eval_group=None, eval_metric='ndcg',
            eval_at=[1], early_stopping_rounds=None, verbose=True,
            feature_name='auto', categorical_feature='auto', callbacks=None):
        # check group data
Guolin Ke's avatar
Guolin Ke committed
747
        if group is None:
748
            raise ValueError("Should set group for ranking task")
wxchan's avatar
wxchan committed
749
750

        if eval_set is not None:
Guolin Ke's avatar
Guolin Ke committed
751
            if eval_group is None:
752
                raise ValueError("Eval_group cannot be None when eval_set is not None")
Guolin Ke's avatar
Guolin Ke committed
753
            elif len(eval_group) != len(eval_set):
754
                raise ValueError("Length of eval_group should be equal to eval_set")
wxchan's avatar
wxchan committed
755
            elif (isinstance(eval_group, dict) and any(i not in eval_group or eval_group[i] is None for i in range_(len(eval_group)))) \
wxchan's avatar
wxchan committed
756
                    or (isinstance(eval_group, list) and any(group is None for group in eval_group)):
757
758
                raise ValueError("Should set group for all eval datasets for ranking task; "
                                 "if you use dict, the index should start from 0")
759

760
        self._eval_at = eval_at
761
762
        super(LGBMRanker, self).fit(X, y, sample_weight=sample_weight,
                                    init_score=init_score, group=group,
763
764
                                    eval_set=eval_set, eval_names=eval_names,
                                    eval_sample_weight=eval_sample_weight,
765
766
767
768
                                    eval_init_score=eval_init_score, eval_group=eval_group,
                                    eval_metric=eval_metric,
                                    early_stopping_rounds=early_stopping_rounds,
                                    verbose=verbose, feature_name=feature_name,
769
                                    categorical_feature=categorical_feature,
770
                                    callbacks=callbacks)
wxchan's avatar
wxchan committed
771
        return self
772
773

    base_doc = LGBMModel.fit.__doc__
774
775
776
    fit.__doc__ = (base_doc[:base_doc.find('eval_class_weight :')] +
                   base_doc[base_doc.find('eval_init_score :'):])
    base_doc = fit.__doc__
777
778
779
780
781
782
    fit.__doc__ = (base_doc[:base_doc.find('eval_metric :')] +
                   'eval_metric : string, list of strings, callable or None, optional (default="ndcg")\n' +
                   base_doc[base_doc.find('            If string, it should be a built-in evaluation metric to use.'):base_doc.find('early_stopping_rounds :')] +
                   'eval_at : list of int, optional (default=[1])\n'
                   '            The evaluation positions of NDCG.\n' +
                   base_doc[base_doc.find('        early_stopping_rounds :'):])