sparse_bin.hpp

#ifndef LIGHTGBM_IO_SPARSE_BIN_HPP_
#define LIGHTGBM_IO_SPARSE_BIN_HPP_

#include <LightGBM/utils/log.h>

#include <LightGBM/bin.h>
#include "ordered_sparse_bin.hpp"

#include <omp.h>

#include <cstring>
#include <cstdint>

#include <vector>

namespace LightGBM {

const size_t kNumFastIndex = 64;

template <typename VAL_T> class SparseBinIterator;

template <typename VAL_T>
class SparseBin:public Bin {
public:
  friend class SparseBinIterator<VAL_T>;

  explicit SparseBin(data_size_t num_data)
    : num_data_(num_data) {
    #pragma omp parallel
    #pragma omp master
    {
      num_threads_ = omp_get_num_threads();
    }
    for (int i = 0; i < num_threads_; ++i) {
      push_buffers_.emplace_back();
    }
  }

  ~SparseBin() {
  }

  void Push(int tid, data_size_t idx, uint32_t value) override {
    // not store zero data
    if (value == 0) { return; }
    push_buffers_[tid].emplace_back(idx, static_cast<VAL_T>(value));
  }

  BinIterator* GetIterator(data_size_t start_idx) const override;

  void ConstructHistogram(data_size_t*, data_size_t , const score_t* ,
                 const score_t* , HistogramBinEntry*) const override {
    // Will use OrderedSparseBin->ConstructHistogram() instead
    Log::Stderr("Should use OrderedSparseBin->ConstructHistogram() instead");
  }

  data_size_t Split(unsigned int threshold, data_size_t* data_indices, data_size_t num_data,
                         data_size_t* lte_indices, data_size_t* gt_indices) const override {
    const auto fast_pair = fast_index_[(data_indices[0]) >> fast_index_shift_];
    data_size_t j = fast_pair.first;
    data_size_t cur_pos = fast_pair.second;
    data_size_t lte_count = 0;
    data_size_t gt_count = 0;
    for (data_size_t i = 0; i < num_data; i++) {
      const data_size_t idx = data_indices[i];
      while (cur_pos < idx && j < num_vals_) {
        ++j;
        cur_pos += delta_[j];
      }
      VAL_T bin = 0;
      if (cur_pos == idx && j < num_vals_) {
        bin = vals_[j];
      }
      if (bin > threshold) {
        gt_indices[gt_count++] = idx;
      } else {
        lte_indices[lte_count++] = idx;
      }
    }
    return lte_count;
  }

  data_size_t num_data() const override { return num_data_; }

  OrderedBin* CreateOrderedBin() const override {
    return new OrderedSparseBin<VAL_T>(delta_, vals_);
  }

  void FinishLoad() override {
    // get total non zero size
    size_t non_zero_size = 0;
    for (size_t i = 0; i < push_buffers_.size(); i++) {
      non_zero_size += push_buffers_[i].size();
    }
    // merge
    non_zero_pair_.reserve(non_zero_size);
    for (size_t i = 0; i < push_buffers_.size(); i++) {
      non_zero_pair_.insert(non_zero_pair_.end(), push_buffers_[i].begin(), push_buffers_[i].end());
      push_buffers_[i].clear();
      push_buffers_[i].shrink_to_fit();
    }
    push_buffers_.clear();
    push_buffers_.shrink_to_fit();
    // sort by data index
    std::sort(non_zero_pair_.begin(), non_zero_pair_.end(),
      [](const std::pair<data_size_t, VAL_T>& a, const std::pair<data_size_t, VAL_T>& b) {
      return a.first < b.first;
    });
    // load detla array
    LoadFromPair(non_zero_pair_);
    // free memory
    non_zero_pair_.clear();
    non_zero_pair_.shrink_to_fit();
  }

  void LoadFromPair(const std::vector<std::pair<data_size_t, VAL_T>>& non_zero_pair) {
    delta_.clear();
    vals_.clear();
    // transform to delta array
    const uint8_t kMaxDelta = 255;
    data_size_t last_idx = 0;
    for (size_t i = 0; i < non_zero_pair.size(); i++) {
      const data_size_t cur_idx = non_zero_pair[i].first;
      const VAL_T bin = non_zero_pair[i].second;
      data_size_t cur_delta = cur_idx - last_idx;
      while (cur_delta > kMaxDelta) {
        delta_.push_back(255);
        vals_.push_back(0);
        cur_delta -= kMaxDelta;
      }
      delta_.push_back(static_cast<uint8_t>(cur_delta));
      vals_.push_back(bin);
      last_idx = cur_idx;
    }
    // avoid out of range
    delta_.push_back(0);
    num_vals_ = static_cast<data_size_t>(vals_.size());

    // reduce memory cost
    delta_.shrink_to_fit();
    vals_.shrink_to_fit();

    // generate fast index
    GetFastIndex();
  }

  void GetFastIndex() {
    fast_index_.clear();
    // get shift cnt
    data_size_t mod_size = (num_data_ + kNumFastIndex - 1) / kNumFastIndex;
    data_size_t pow2_mod_size = 1;
    fast_index_shift_ = 0;
    while (pow2_mod_size < mod_size) {
      pow2_mod_size <<= 1;
      ++fast_index_shift_;
    }
    // build fast index
    data_size_t next_i = 0;
    data_size_t cur_pos = 0;
    for (data_size_t i = 0; i < num_vals_; ++i) {
      cur_pos += delta_[i];
      while (next_i < cur_pos) {
        fast_index_.emplace_back(i, cur_pos);
        next_i += pow2_mod_size;
      }
    }
    // avoid out of range
    while (next_i < num_data_) {
      fast_index_.emplace_back(num_vals_ - 1, cur_pos);
      next_i += pow2_mod_size;
    }
    fast_index_.shrink_to_fit();
  }

  void SaveBinaryToFile(FILE* file) const override {
    fwrite(&num_vals_, sizeof(num_vals_), 1, file);
    fwrite(delta_.data(), sizeof(uint8_t), num_vals_ + 1, file);
    fwrite(vals_.data(), sizeof(VAL_T), num_vals_, file);
  }

  size_t SizesInByte() const override {
    return sizeof(num_vals_) + sizeof(uint8_t) * (num_vals_ + 1)
      + sizeof(VAL_T) * num_vals_;
  }

  void LoadFromMemory(const void* memory, const std::vector<data_size_t>& local_used_indices) override {
    const char* mem_ptr = reinterpret_cast<const char*>(memory);
    data_size_t tmp_num_vals = *(reinterpret_cast<const data_size_t*>(mem_ptr));
    mem_ptr += sizeof(tmp_num_vals);
    const uint8_t* tmp_delta = reinterpret_cast<const uint8_t*>(mem_ptr);
    mem_ptr += sizeof(uint8_t) * (tmp_num_vals + 1);
    const VAL_T* tmp_vals = reinterpret_cast<const VAL_T*>(mem_ptr);

    if (local_used_indices.size() <= 0) {
      delta_.clear();
      vals_.clear();
      num_vals_ = tmp_num_vals;
      for (data_size_t i = 0; i < num_vals_; i++) {
        delta_.push_back(tmp_delta[i]);
        vals_.push_back(tmp_vals[i]);
      }
      delta_.push_back(0);
      // reduce memory cost
      delta_.shrink_to_fit();
      vals_.shrink_to_fit();

      // generate fast index
      GetFastIndex();

    } else {
      std::vector<std::pair<data_size_t, VAL_T>> tmp_pair;
      data_size_t cur_pos = tmp_delta[0];
      data_size_t j = 0;
      for (data_size_t i = 0; i < static_cast<data_size_t>(local_used_indices.size()); ++i) {
        const data_size_t idx = local_used_indices[i];
        while (cur_pos < idx && j < tmp_num_vals) {
          ++j;
          cur_pos += tmp_delta[j];
        }
        VAL_T bin = 0;
        if (cur_pos == idx && j < tmp_num_vals) {
          bin = tmp_vals[j];
        }
        if (bin > 0) {
          // new row index is i
          tmp_pair.emplace_back(i, bin);
        }
      }
      LoadFromPair(tmp_pair);
    }

  }

private:
  data_size_t num_data_;
  std::vector<std::pair<data_size_t, VAL_T>> non_zero_pair_;
  std::vector<uint8_t> delta_;
  std::vector<VAL_T> vals_;
  data_size_t num_vals_;
  int num_threads_;
  std::vector<std::vector<std::pair<data_size_t, VAL_T>>> push_buffers_;
  std::vector<std::pair<data_size_t, data_size_t>> fast_index_;
  data_size_t fast_index_shift_;
};

template <typename VAL_T>
class SparseBinIterator: public BinIterator {
public:
  SparseBinIterator(const SparseBin<VAL_T>* bin_data, data_size_t start_idx)
    : bin_data_(bin_data) {
    const auto fast_pair = bin_data->fast_index_[start_idx >> bin_data->fast_index_shift_];
    i_delta_ = fast_pair.first;
    cur_pos_ = fast_pair.second;
  }
  uint32_t Get(data_size_t idx) override {
    while (cur_pos_ < idx && i_delta_ < bin_data_->num_vals_) {
      ++i_delta_;
      cur_pos_ += bin_data_->delta_[i_delta_];
    }
    if (idx == cur_pos_ && i_delta_ >= 0 
      && i_delta_ < bin_data_->vals_.size()) {
      return bin_data_->vals_[i_delta_];
    } else { return 0; }
  }

private:
  const SparseBin<VAL_T>* bin_data_;
  data_size_t cur_pos_ = 0;
  data_size_t i_delta_ = 0;
};


template <typename VAL_T>
BinIterator* SparseBin<VAL_T>::GetIterator(data_size_t start_idx) const {
  return new SparseBinIterator<VAL_T>(this, start_idx);
}

}  // namespace LightGBM
#endif  #endif  // LightGBM_IO_SPARSE_BIN_HPP_