metadata.cpp

/*!
 * Copyright (c) 2016 Microsoft Corporation. All rights reserved.
 * Licensed under the MIT License. See LICENSE file in the project root for license information.
 */
#include <LightGBM/dataset.h>
#include <LightGBM/utils/common.h>

#include <string>
#include <vector>

namespace LightGBM {

Metadata::Metadata() {
  num_weights_ = 0;
  num_init_score_ = 0;
  num_data_ = 0;
  num_queries_ = 0;
  weight_load_from_file_ = false;
  query_load_from_file_ = false;
  init_score_load_from_file_ = false;
}

void Metadata::Init(const char* data_filename, const char* initscore_file) {
  data_filename_ = data_filename;
  // for lambdarank, it needs query data for partition data in parallel learning
  LoadQueryBoundaries();
  LoadWeights();
  LoadQueryWeights();
  LoadInitialScore(initscore_file);
}

Metadata::~Metadata() {
}

void Metadata::Init(data_size_t num_data, int weight_idx, int query_idx) {
  num_data_ = num_data;
  label_ = std::vector<label_t>(num_data_);
  if (weight_idx >= 0) {
    if (!weights_.empty()) {
      Log::Info("Using weights in data file, ignoring the additional weights file");
      weights_.clear();
    }
    weights_ = std::vector<label_t>(num_data_, 0.0f);
    num_weights_ = num_data_;
    weight_load_from_file_ = false;
  }
  if (query_idx >= 0) {
    if (!query_boundaries_.empty()) {
      Log::Info("Using query id in data file, ignoring the additional query file");
      query_boundaries_.clear();
    }
    if (!query_weights_.empty()) { query_weights_.clear(); }
    queries_ = std::vector<data_size_t>(num_data_, 0);
    query_load_from_file_ = false;
  }
}

void Metadata::Init(const Metadata& fullset, const data_size_t* used_indices, data_size_t num_used_indices) {
  num_data_ = num_used_indices;

  label_ = std::vector<label_t>(num_used_indices);
  #pragma omp parallel for schedule(static)
  for (data_size_t i = 0; i < num_used_indices; ++i) {
    label_[i] = fullset.label_[used_indices[i]];
  }

  if (!fullset.weights_.empty()) {
    weights_ = std::vector<label_t>(num_used_indices);
    num_weights_ = num_used_indices;
    #pragma omp parallel for schedule(static)
    for (data_size_t i = 0; i < num_used_indices; ++i) {
      weights_[i] = fullset.weights_[used_indices[i]];
    }
  } else {
    num_weights_ = 0;
  }

  if (!fullset.init_score_.empty()) {
    int num_class = static_cast<int>(fullset.num_init_score_ / fullset.num_data_);
    init_score_ = std::vector<double>(static_cast<size_t>(num_used_indices) * num_class);
    num_init_score_ = static_cast<int64_t>(num_used_indices) * num_class;
    #pragma omp parallel for schedule(static)
    for (int k = 0; k < num_class; ++k) {
      const size_t offset_dest = static_cast<size_t>(k) * num_data_;
      const size_t offset_src = static_cast<size_t>(k) * fullset.num_data_;
      for (data_size_t i = 0; i < num_used_indices; ++i) {
        init_score_[offset_dest + i] = fullset.init_score_[offset_src + used_indices[i]];
      }
    }
  } else {
    num_init_score_ = 0;
  }

  if (!fullset.query_boundaries_.empty()) {
    std::vector<data_size_t> used_query;
    data_size_t data_idx = 0;
    for (data_size_t qid = 0; qid < num_queries_ && data_idx < num_used_indices; ++qid) {
      data_size_t start = fullset.query_boundaries_[qid];
      data_size_t end = fullset.query_boundaries_[qid + 1];
      data_size_t len = end - start;
      if (used_indices[data_idx] > start) {
        continue;
      } else if (used_indices[data_idx] == start) {
        if (num_used_indices >= data_idx + len && used_indices[data_idx + len - 1] == end - 1) {
          used_query.push_back(qid);
          data_idx += len;
        } else {
          Log::Fatal("Data partition error, data didn't match queries");
        }
      } else {
        Log::Fatal("Data partition error, data didn't match queries");
      }
    }
    query_boundaries_ = std::vector<data_size_t>(used_query.size() + 1);
    num_queries_ = static_cast<data_size_t>(used_query.size());
    query_boundaries_[0] = 0;
    for (data_size_t i = 0; i < num_queries_; ++i) {
      data_size_t qid = used_query[i];
      data_size_t len = fullset.query_boundaries_[qid + 1] - fullset.query_boundaries_[qid];
      query_boundaries_[i + 1] = query_boundaries_[i] + len;
    }
  } else {
    num_queries_ = 0;
  }
}

void Metadata::PartitionLabel(const std::vector<data_size_t>& used_indices) {
  if (used_indices.empty()) {
    return;
  }
  auto old_label = label_;
  num_data_ = static_cast<data_size_t>(used_indices.size());
  label_ = std::vector<label_t>(num_data_);
  #pragma omp parallel for schedule(static)
  for (data_size_t i = 0; i < num_data_; ++i) {
    label_[i] = old_label[used_indices[i]];
  }
  old_label.clear();
}

void Metadata::CheckOrPartition(data_size_t num_all_data, const std::vector<data_size_t>& used_data_indices) {
  if (used_data_indices.empty()) {
    if (!queries_.empty()) {
      // need convert query_id to boundaries
      std::vector<data_size_t> tmp_buffer;
      data_size_t last_qid = -1;
      data_size_t cur_cnt = 0;
      for (data_size_t i = 0; i < num_data_; ++i) {
        if (last_qid != queries_[i]) {
          if (cur_cnt > 0) {
            tmp_buffer.push_back(cur_cnt);
          }
          cur_cnt = 0;
          last_qid = queries_[i];
        }
        ++cur_cnt;
      }
      tmp_buffer.push_back(cur_cnt);
      query_boundaries_ = std::vector<data_size_t>(tmp_buffer.size() + 1);
      num_queries_ = static_cast<data_size_t>(tmp_buffer.size());
      query_boundaries_[0] = 0;
      for (size_t i = 0; i < tmp_buffer.size(); ++i) {
        query_boundaries_[i + 1] = query_boundaries_[i] + tmp_buffer[i];
      }
      LoadQueryWeights();
      queries_.clear();
    }
    // check weights
    if (!weights_.empty() && num_weights_ != num_data_) {
      weights_.clear();
      num_weights_ = 0;
      Log::Fatal("Weights size doesn't match data size");
    }

    // check query boundries
    if (!query_boundaries_.empty() && query_boundaries_[num_queries_] != num_data_) {
      query_boundaries_.clear();
      num_queries_ = 0;
      Log::Fatal("Query size doesn't match data size");
    }

    // contain initial score file
    if (!init_score_.empty() && (num_init_score_ % num_data_) != 0) {
      init_score_.clear();
      num_init_score_ = 0;
      Log::Fatal("Initial score size doesn't match data size");
    }
  } else {
    if (!queries_.empty()) {
      Log::Fatal("Cannot used query_id for parallel training");
    }
    data_size_t num_used_data = static_cast<data_size_t>(used_data_indices.size());
    // check weights
    if (weight_load_from_file_) {
      if (weights_.size() > 0 && num_weights_ != num_all_data) {
        weights_.clear();
        num_weights_ = 0;
        Log::Fatal("Weights size doesn't match data size");
      }
      // get local weights
      if (!weights_.empty()) {
        auto old_weights = weights_;
        num_weights_ = num_data_;
        weights_ = std::vector<label_t>(num_data_);
        #pragma omp parallel for schedule(static)
        for (int i = 0; i < static_cast<int>(used_data_indices.size()); ++i) {
          weights_[i] = old_weights[used_data_indices[i]];
        }
        old_weights.clear();
      }
    }
    if (query_load_from_file_) {
      // check query boundries
      if (!query_boundaries_.empty() && query_boundaries_[num_queries_] != num_all_data) {
        query_boundaries_.clear();
        num_queries_ = 0;
        Log::Fatal("Query size doesn't match data size");
      }
      // get local query boundaries
      if (!query_boundaries_.empty()) {
        std::vector<data_size_t> used_query;
        data_size_t data_idx = 0;
        for (data_size_t qid = 0; qid < num_queries_ && data_idx < num_used_data; ++qid) {
          data_size_t start = query_boundaries_[qid];
          data_size_t end = query_boundaries_[qid + 1];
          data_size_t len = end - start;
          if (used_data_indices[data_idx] > start) {
            continue;
          } else if (used_data_indices[data_idx] == start) {
            if (num_used_data >= data_idx + len && used_data_indices[data_idx + len - 1] == end - 1) {
              used_query.push_back(qid);
              data_idx += len;
            } else {
              Log::Fatal("Data partition error, data didn't match queries");
            }
          } else {
            Log::Fatal("Data partition error, data didn't match queries");
          }
        }
        auto old_query_boundaries = query_boundaries_;
        query_boundaries_ = std::vector<data_size_t>(used_query.size() + 1);
        num_queries_ = static_cast<data_size_t>(used_query.size());
        query_boundaries_[0] = 0;
        for (data_size_t i = 0; i < num_queries_; ++i) {
          data_size_t qid = used_query[i];
          data_size_t len = old_query_boundaries[qid + 1] - old_query_boundaries[qid];
          query_boundaries_[i + 1] = query_boundaries_[i] + len;
        }
        old_query_boundaries.clear();
      }
    }
    if (init_score_load_from_file_) {
      // contain initial score file
      if (!init_score_.empty() && (num_init_score_ % num_all_data) != 0) {
        init_score_.clear();
        num_init_score_ = 0;
        Log::Fatal("Initial score size doesn't match data size");
      }

      // get local initial scores
      if (!init_score_.empty()) {
        auto old_scores = init_score_;
        int num_class = static_cast<int>(num_init_score_ / num_all_data);
        num_init_score_ = static_cast<int64_t>(num_data_) * num_class;
        init_score_ = std::vector<double>(num_init_score_);
        #pragma omp parallel for schedule(static)
        for (int k = 0; k < num_class; ++k) {
          const size_t offset_dest = static_cast<size_t>(k) * num_data_;
          const size_t offset_src = static_cast<size_t>(k) * num_all_data;
          for (size_t i = 0; i < used_data_indices.size(); ++i) {
            init_score_[offset_dest + i] = old_scores[offset_src + used_data_indices[i]];
          }
        }
        old_scores.clear();
      }
    }
    // re-load query weight
    LoadQueryWeights();
  }
}

void Metadata::SetInitScore(const double* init_score, data_size_t len) {
  std::lock_guard<std::mutex> lock(mutex_);
  // save to nullptr
  if (init_score == nullptr || len == 0) {
    init_score_.clear();
    num_init_score_ = 0;
    return;
  }
  if ((len % num_data_) != 0) {
    Log::Fatal("Initial score size doesn't match data size");
  }
  if (init_score_.empty()) { init_score_.resize(len); }
  num_init_score_ = len;

  #pragma omp parallel for schedule(static)
  for (int64_t i = 0; i < num_init_score_; ++i) {
    init_score_[i] = Common::AvoidInf(init_score[i]);
  }
  init_score_load_from_file_ = false;
}

void Metadata::SetLabel(const label_t* label, data_size_t len) {
  std::lock_guard<std::mutex> lock(mutex_);
  if (label == nullptr) {
    Log::Fatal("label cannot be nullptr");
  }
  if (num_data_ != len) {
    Log::Fatal("Length of label is not same with #data");
  }
  if (label_.empty()) { label_.resize(num_data_); }

  #pragma omp parallel for schedule(static)
  for (data_size_t i = 0; i < num_data_; ++i) {
    label_[i] = Common::AvoidInf(label[i]);
  }
}

void Metadata::SetWeights(const label_t* weights, data_size_t len) {
  std::lock_guard<std::mutex> lock(mutex_);
  // save to nullptr
  if (weights == nullptr || len == 0) {
    weights_.clear();
    num_weights_ = 0;
    return;
  }
  if (num_data_ != len) {
    Log::Fatal("Length of weights is not same with #data");
  }
  if (weights_.empty()) { weights_.resize(num_data_); }
  num_weights_ = num_data_;

  #pragma omp parallel for schedule(static)
  for (data_size_t i = 0; i < num_weights_; ++i) {
    weights_[i] = Common::AvoidInf(weights[i]);
  }
  LoadQueryWeights();
  weight_load_from_file_ = false;
}

void Metadata::SetQuery(const data_size_t* query, data_size_t len) {
  std::lock_guard<std::mutex> lock(mutex_);
  // save to nullptr
  if (query == nullptr || len == 0) {
    query_boundaries_.clear();
    num_queries_ = 0;
    return;
  }
  data_size_t sum = 0;
  #pragma omp parallel for schedule(static) reduction(+:sum)
  for (data_size_t i = 0; i < len; ++i) {
    sum += query[i];
  }
  if (num_data_ != sum) {
    Log::Fatal("Sum of query counts is not same with #data");
  }
  num_queries_ = len;
  query_boundaries_.resize(num_queries_ + 1);
  query_boundaries_[0] = 0;
  for (data_size_t i = 0; i < num_queries_; ++i) {
    query_boundaries_[i + 1] = query_boundaries_[i] + query[i];
  }
  LoadQueryWeights();
  query_load_from_file_ = false;
}

void Metadata::LoadWeights() {
  num_weights_ = 0;
  std::string weight_filename(data_filename_);
  // default weight file name
  weight_filename.append(".weight");
  TextReader<size_t> reader(weight_filename.c_str(), false);
  reader.ReadAllLines();
  if (reader.Lines().empty()) {
    return;
  }
  Log::Info("Loading weights...");
  num_weights_ = static_cast<data_size_t>(reader.Lines().size());
  weights_ = std::vector<label_t>(num_weights_);
  #pragma omp parallel for schedule(static)
  for (data_size_t i = 0; i < num_weights_; ++i) {
    double tmp_weight = 0.0f;
    Common::Atof(reader.Lines()[i].c_str(), &tmp_weight);
    weights_[i] = Common::AvoidInf(static_cast<label_t>(tmp_weight));
  }
  weight_load_from_file_ = true;
}

void Metadata::LoadInitialScore(const char* initscore_file) {
  num_init_score_ = 0;
  std::string init_score_filename(initscore_file);
  if (init_score_filename.size() <= 0) {
    init_score_filename = std::string(data_filename_);
    // default weight file name
    init_score_filename.append(".init");
  }
  TextReader<size_t> reader(init_score_filename.c_str(), false);
  reader.ReadAllLines();
  if (reader.Lines().empty()) {
    return;
  }
  Log::Info("Loading initial scores...");

  // use first line to count number class
  int num_class = static_cast<int>(Common::Split(reader.Lines()[0].c_str(), '\t').size());
  data_size_t num_line = static_cast<data_size_t>(reader.Lines().size());
  num_init_score_ = static_cast<int64_t>(num_line) * num_class;

  init_score_ = std::vector<double>(num_init_score_);
  if (num_class == 1) {
    #pragma omp parallel for schedule(static)
    for (data_size_t i = 0; i < num_line; ++i) {
      double tmp = 0.0f;
      Common::Atof(reader.Lines()[i].c_str(), &tmp);
      init_score_[i] = Common::AvoidInf(static_cast<double>(tmp));
    }
  } else {
    std::vector<std::string> oneline_init_score;
    #pragma omp parallel for schedule(static)
    for (data_size_t i = 0; i < num_line; ++i) {
      double tmp = 0.0f;
      oneline_init_score = Common::Split(reader.Lines()[i].c_str(), '\t');
      if (static_cast<int>(oneline_init_score.size()) != num_class) {
        Log::Fatal("Invalid initial score file. Redundant or insufficient columns");
      }
      for (int k = 0; k < num_class; ++k) {
        Common::Atof(oneline_init_score[k].c_str(), &tmp);
        init_score_[static_cast<size_t>(k) * num_line + i] = Common::AvoidInf(static_cast<double>(tmp));
      }
    }
  }
  init_score_load_from_file_ = true;
}

void Metadata::LoadQueryBoundaries() {
  num_queries_ = 0;
  std::string query_filename(data_filename_);
  // default query file name
  query_filename.append(".query");
  TextReader<size_t> reader(query_filename.c_str(), false);
  reader.ReadAllLines();
  if (reader.Lines().empty()) {
    return;
  }
  Log::Info("Loading query boundaries...");
  query_boundaries_ = std::vector<data_size_t>(reader.Lines().size() + 1);
  num_queries_ = static_cast<data_size_t>(reader.Lines().size());
  query_boundaries_[0] = 0;
  for (size_t i = 0; i < reader.Lines().size(); ++i) {
    int tmp_cnt;
    Common::Atoi(reader.Lines()[i].c_str(), &tmp_cnt);
    query_boundaries_[i + 1] = query_boundaries_[i] + static_cast<data_size_t>(tmp_cnt);
  }
  query_load_from_file_ = true;
}

void Metadata::LoadQueryWeights() {
  if (weights_.size() == 0 || query_boundaries_.size() == 0) {
    return;
  }
  query_weights_.clear();
  Log::Info("Loading query weights...");
  query_weights_ = std::vector<label_t>(num_queries_);
  for (data_size_t i = 0; i < num_queries_; ++i) {
    query_weights_[i] = 0.0f;
    for (data_size_t j = query_boundaries_[i]; j < query_boundaries_[i + 1]; ++j) {
      query_weights_[i] += weights_[j];
    }
    query_weights_[i] /= (query_boundaries_[i + 1] - query_boundaries_[i]);
  }
}

void Metadata::LoadFromMemory(const void* memory) {
  const char* mem_ptr = reinterpret_cast<const char*>(memory);

  num_data_ = *(reinterpret_cast<const data_size_t*>(mem_ptr));
  mem_ptr += sizeof(num_data_);
  num_weights_ = *(reinterpret_cast<const data_size_t*>(mem_ptr));
  mem_ptr += sizeof(num_weights_);
  num_queries_ = *(reinterpret_cast<const data_size_t*>(mem_ptr));
  mem_ptr += sizeof(num_queries_);

  if (!label_.empty()) { label_.clear(); }
  label_ = std::vector<label_t>(num_data_);
  std::memcpy(label_.data(), mem_ptr, sizeof(label_t) * num_data_);
  mem_ptr += sizeof(label_t) * num_data_;

  if (num_weights_ > 0) {
    if (!weights_.empty()) { weights_.clear(); }
    weights_ = std::vector<label_t>(num_weights_);
    std::memcpy(weights_.data(), mem_ptr, sizeof(label_t) * num_weights_);
    mem_ptr += sizeof(label_t) * num_weights_;
    weight_load_from_file_ = true;
  }
  if (num_queries_ > 0) {
    if (!query_boundaries_.empty()) { query_boundaries_.clear(); }
    query_boundaries_ = std::vector<data_size_t>(num_queries_ + 1);
    std::memcpy(query_boundaries_.data(), mem_ptr, sizeof(data_size_t) * (num_queries_ + 1));
    mem_ptr += sizeof(data_size_t) * (num_queries_ + 1);
    query_load_from_file_ = true;
  }
  LoadQueryWeights();
}

void Metadata::SaveBinaryToFile(const VirtualFileWriter* writer) const {
  writer->Write(&num_data_, sizeof(num_data_));
  writer->Write(&num_weights_, sizeof(num_weights_));
  writer->Write(&num_queries_, sizeof(num_queries_));
  writer->Write(label_.data(), sizeof(label_t) * num_data_);
  if (!weights_.empty()) {
    writer->Write(weights_.data(), sizeof(label_t) * num_weights_);
  }
  if (!query_boundaries_.empty()) {
    writer->Write(query_boundaries_.data(), sizeof(data_size_t) * (num_queries_ + 1));
  }
  if (num_init_score_ > 0) {
    Log::Warning("Please note that `init_score` is not saved in binary file.\n"
      "If you need it, please set it again after loading Dataset.");
  }
}

size_t Metadata::SizesInByte() const {
  size_t size = sizeof(num_data_) + sizeof(num_weights_)
    + sizeof(num_queries_);
  size += sizeof(label_t) * num_data_;
  if (!weights_.empty()) {
    size += sizeof(label_t) * num_weights_;
  }
  if (!query_boundaries_.empty()) {
    size += sizeof(data_size_t) * (num_queries_ + 1);
  }
  return size;
}


}  // namespace LightGBM