basic.py 146 KB
Newer Older
wxchan's avatar
wxchan committed
1
# coding: utf-8
2
"""Wrapper for C API of LightGBM."""
wxchan's avatar
wxchan committed
3
import ctypes
4
import json
5
import os
wxchan's avatar
wxchan committed
6
import warnings
7
from collections import OrderedDict
8
from copy import deepcopy
9
10
11
from functools import wraps
from logging import Logger
from tempfile import NamedTemporaryFile
12
from typing import Any, Dict, List, Set, Union
wxchan's avatar
wxchan committed
13
14
15
16

import numpy as np
import scipy.sparse

17
from .compat import PANDAS_INSTALLED, concat, dt_DataTable, is_dtype_sparse, pd_DataFrame, pd_Series
wxchan's avatar
wxchan committed
18
19
from .libpath import find_lib_path

wxchan's avatar
wxchan committed
20

21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
class _DummyLogger:
    def info(self, msg):
        print(msg)

    def warning(self, msg):
        warnings.warn(msg, stacklevel=3)


_LOGGER = _DummyLogger()


def register_logger(logger):
    """Register custom logger.

    Parameters
    ----------
    logger : logging.Logger
        Custom logger.
    """
    if not isinstance(logger, Logger):
        raise TypeError("Logger should inherit logging.Logger class")
    global _LOGGER
    _LOGGER = logger


def _normalize_native_string(func):
    """Join log messages from native library which come by chunks."""
    msg_normalized = []

    @wraps(func)
    def wrapper(msg):
        nonlocal msg_normalized
        if msg.strip() == '':
            msg = ''.join(msg_normalized)
            msg_normalized = []
            return func(msg)
        else:
            msg_normalized.append(msg)

    return wrapper


def _log_info(msg):
    _LOGGER.info(msg)


def _log_warning(msg):
    _LOGGER.warning(msg)


@_normalize_native_string
def _log_native(msg):
    _LOGGER.info(msg)


76
def _log_callback(msg):
77
78
    """Redirect logs from native library into Python."""
    _log_native("{0:s}".format(msg.decode('utf-8')))
79
80


wxchan's avatar
wxchan committed
81
def _load_lib():
82
    """Load LightGBM library."""
wxchan's avatar
wxchan committed
83
84
    lib_path = find_lib_path()
    if len(lib_path) == 0:
85
        return None
wxchan's avatar
wxchan committed
86
87
    lib = ctypes.cdll.LoadLibrary(lib_path[0])
    lib.LGBM_GetLastError.restype = ctypes.c_char_p
88
89
90
    callback = ctypes.CFUNCTYPE(None, ctypes.c_char_p)
    lib.callback = callback(_log_callback)
    if lib.LGBM_RegisterLogCallback(lib.callback) != 0:
91
        raise LightGBMError(lib.LGBM_GetLastError().decode('utf-8'))
wxchan's avatar
wxchan committed
92
93
    return lib

wxchan's avatar
wxchan committed
94

wxchan's avatar
wxchan committed
95
96
_LIB = _load_lib()

wxchan's avatar
wxchan committed
97

98
99
100
NUMERIC_TYPES = (int, float, bool)


wxchan's avatar
wxchan committed
101
def _safe_call(ret):
102
103
    """Check the return value from C API call.

wxchan's avatar
wxchan committed
104
105
106
    Parameters
    ----------
    ret : int
107
        The return value from C API calls.
wxchan's avatar
wxchan committed
108
109
    """
    if ret != 0:
110
        raise LightGBMError(_LIB.LGBM_GetLastError().decode('utf-8'))
wxchan's avatar
wxchan committed
111

wxchan's avatar
wxchan committed
112

wxchan's avatar
wxchan committed
113
def is_numeric(obj):
114
    """Check whether object is a number or not, include numpy number, etc."""
wxchan's avatar
wxchan committed
115
116
117
    try:
        float(obj)
        return True
wxchan's avatar
wxchan committed
118
119
120
    except (TypeError, ValueError):
        # TypeError: obj is not a string or a number
        # ValueError: invalid literal
wxchan's avatar
wxchan committed
121
122
        return False

wxchan's avatar
wxchan committed
123

wxchan's avatar
wxchan committed
124
def is_numpy_1d_array(data):
125
    """Check whether data is a numpy 1-D array."""
126
    return isinstance(data, np.ndarray) and len(data.shape) == 1
wxchan's avatar
wxchan committed
127

wxchan's avatar
wxchan committed
128

129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
def is_numpy_column_array(data):
    """Check whether data is a column numpy array."""
    if not isinstance(data, np.ndarray):
        return False
    shape = data.shape
    return len(shape) == 2 and shape[1] == 1


def cast_numpy_1d_array_to_dtype(array, dtype):
    """Cast numpy 1d array to given dtype."""
    if array.dtype == dtype:
        return array
    return array.astype(dtype=dtype, copy=False)


wxchan's avatar
wxchan committed
144
def is_1d_list(data):
145
146
    """Check whether data is a 1-D list."""
    return isinstance(data, list) and (not data or is_numeric(data[0]))
wxchan's avatar
wxchan committed
147

wxchan's avatar
wxchan committed
148

149
def list_to_1d_numpy(data, dtype=np.float32, name='list'):
150
    """Convert data to numpy 1-D array."""
wxchan's avatar
wxchan committed
151
    if is_numpy_1d_array(data):
152
153
154
155
156
        return cast_numpy_1d_array_to_dtype(data, dtype)
    elif is_numpy_column_array(data):
        _log_warning('Converting column-vector to 1d array')
        array = data.ravel()
        return cast_numpy_1d_array_to_dtype(array, dtype)
wxchan's avatar
wxchan committed
157
158
    elif is_1d_list(data):
        return np.array(data, dtype=dtype, copy=False)
159
    elif isinstance(data, pd_Series):
160
161
        if _get_bad_pandas_dtypes([data.dtypes]):
            raise ValueError('Series.dtypes must be int, float or bool')
162
        return np.array(data, dtype=dtype, copy=False)  # SparseArray should be supported as well
wxchan's avatar
wxchan committed
163
    else:
164
165
        raise TypeError("Wrong type({0}) for {1}.\n"
                        "It should be list, numpy 1-D array or pandas Series".format(type(data).__name__, name))
wxchan's avatar
wxchan committed
166

wxchan's avatar
wxchan committed
167

wxchan's avatar
wxchan committed
168
def cfloat32_array_to_numpy(cptr, length):
169
    """Convert a ctypes float pointer array to a numpy array."""
wxchan's avatar
wxchan committed
170
    if isinstance(cptr, ctypes.POINTER(ctypes.c_float)):
171
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
wxchan's avatar
wxchan committed
172
    else:
173
        raise RuntimeError('Expected float pointer')
wxchan's avatar
wxchan committed
174

Guolin Ke's avatar
Guolin Ke committed
175

Guolin Ke's avatar
Guolin Ke committed
176
def cfloat64_array_to_numpy(cptr, length):
177
    """Convert a ctypes double pointer array to a numpy array."""
Guolin Ke's avatar
Guolin Ke committed
178
    if isinstance(cptr, ctypes.POINTER(ctypes.c_double)):
179
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
Guolin Ke's avatar
Guolin Ke committed
180
181
182
    else:
        raise RuntimeError('Expected double pointer')

wxchan's avatar
wxchan committed
183

wxchan's avatar
wxchan committed
184
def cint32_array_to_numpy(cptr, length):
185
    """Convert a ctypes int pointer array to a numpy array."""
wxchan's avatar
wxchan committed
186
    if isinstance(cptr, ctypes.POINTER(ctypes.c_int32)):
187
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
wxchan's avatar
wxchan committed
188
    else:
189
190
191
192
193
194
        raise RuntimeError('Expected int32 pointer')


def cint64_array_to_numpy(cptr, length):
    """Convert a ctypes int pointer array to a numpy array."""
    if isinstance(cptr, ctypes.POINTER(ctypes.c_int64)):
195
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
196
197
    else:
        raise RuntimeError('Expected int64 pointer')
wxchan's avatar
wxchan committed
198

wxchan's avatar
wxchan committed
199

wxchan's avatar
wxchan committed
200
def c_str(string):
201
    """Convert a Python string to C string."""
wxchan's avatar
wxchan committed
202
203
    return ctypes.c_char_p(string.encode('utf-8'))

wxchan's avatar
wxchan committed
204

wxchan's avatar
wxchan committed
205
def c_array(ctype, values):
206
    """Convert a Python array to C array."""
wxchan's avatar
wxchan committed
207
208
    return (ctype * len(values))(*values)

wxchan's avatar
wxchan committed
209

210
211
212
213
214
215
216
217
218
219
def json_default_with_numpy(obj):
    """Convert numpy classes to JSON serializable objects."""
    if isinstance(obj, (np.integer, np.floating, np.bool_)):
        return obj.item()
    elif isinstance(obj, np.ndarray):
        return obj.tolist()
    else:
        return obj


wxchan's avatar
wxchan committed
220
def param_dict_to_str(data):
221
    """Convert Python dictionary to string, which is passed to C API."""
222
    if data is None or not data:
wxchan's avatar
wxchan committed
223
224
225
        return ""
    pairs = []
    for key, val in data.items():
226
        if isinstance(val, (list, tuple, set)) or is_numpy_1d_array(val):
227
228
229
230
231
232
            def to_string(x):
                if isinstance(x, list):
                    return "[{}]".format(','.join(map(str, x)))
                else:
                    return str(x)
            pairs.append(str(key) + '=' + ','.join(map(to_string, val)))
233
        elif isinstance(val, (str, NUMERIC_TYPES)) or is_numeric(val):
wxchan's avatar
wxchan committed
234
            pairs.append(str(key) + '=' + str(val))
235
        elif val is not None:
236
            raise TypeError('Unknown type of parameter:%s, got:%s'
wxchan's avatar
wxchan committed
237
238
                            % (key, type(val).__name__))
    return ' '.join(pairs)
239

wxchan's avatar
wxchan committed
240

241
class _TempFile:
242
243
244
245
    def __enter__(self):
        with NamedTemporaryFile(prefix="lightgbm_tmp_", delete=True) as f:
            self.name = f.name
        return self
wxchan's avatar
wxchan committed
246

247
248
249
    def __exit__(self, exc_type, exc_val, exc_tb):
        if os.path.isfile(self.name):
            os.remove(self.name)
wxchan's avatar
wxchan committed
250

251
252
253
254
    def readlines(self):
        with open(self.name, "r+") as f:
            ret = f.readlines()
        return ret
wxchan's avatar
wxchan committed
255

256
257
    def writelines(self, lines):
        with open(self.name, "w+") as f:
258
            f.writelines(lines)
259

wxchan's avatar
wxchan committed
260

261
class LightGBMError(Exception):
262
263
    """Error thrown by LightGBM."""

264
265
266
    pass


267
268
269
270
271
272
273
274
# DeprecationWarning is not shown by default, so let's create our own with higher level
class LGBMDeprecationWarning(UserWarning):
    """Custom deprecation warning."""

    pass


class _ConfigAliases:
275
276
277
    aliases = {"bin_construct_sample_cnt": {"bin_construct_sample_cnt",
                                            "subsample_for_bin"},
               "boosting": {"boosting",
278
279
280
281
282
283
                            "boosting_type",
                            "boost"},
               "categorical_feature": {"categorical_feature",
                                       "cat_feature",
                                       "categorical_column",
                                       "cat_column"},
284
285
               "data_random_seed": {"data_random_seed",
                                    "data_seed"},
286
287
288
289
               "early_stopping_round": {"early_stopping_round",
                                        "early_stopping_rounds",
                                        "early_stopping",
                                        "n_iter_no_change"},
290
291
292
               "enable_bundle": {"enable_bundle",
                                 "is_enable_bundle",
                                 "bundle"},
293
294
295
296
297
               "eval_at": {"eval_at",
                           "ndcg_eval_at",
                           "ndcg_at",
                           "map_eval_at",
                           "map_at"},
298
299
300
301
302
303
               "group_column": {"group_column",
                                "group",
                                "group_id",
                                "query_column",
                                "query",
                                "query_id"},
304
305
               "header": {"header",
                          "has_header"},
306
307
308
309
310
311
312
313
314
               "ignore_column": {"ignore_column",
                                 "ignore_feature",
                                 "blacklist"},
               "is_enable_sparse": {"is_enable_sparse",
                                    "is_sparse",
                                    "enable_sparse",
                                    "sparse"},
               "label_column": {"label_column",
                                "label"},
315
316
317
               "local_listen_port": {"local_listen_port",
                                     "local_port",
                                     "port"},
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
               "machines": {"machines",
                            "workers",
                            "nodes"},
               "metric": {"metric",
                          "metrics",
                          "metric_types"},
               "num_class": {"num_class",
                             "num_classes"},
               "num_iterations": {"num_iterations",
                                  "num_iteration",
                                  "n_iter",
                                  "num_tree",
                                  "num_trees",
                                  "num_round",
                                  "num_rounds",
                                  "num_boost_round",
                                  "n_estimators"},
335
336
               "num_machines": {"num_machines",
                                "num_machine"},
337
338
339
340
341
               "num_threads": {"num_threads",
                               "num_thread",
                               "nthread",
                               "nthreads",
                               "n_jobs"},
342
343
344
345
               "objective": {"objective",
                             "objective_type",
                             "app",
                             "application"},
346
347
               "pre_partition": {"pre_partition",
                                 "is_pre_partition"},
348
349
350
351
               "tree_learner": {"tree_learner",
                                "tree",
                                "tree_type",
                                "tree_learner_type"},
352
353
354
               "two_round": {"two_round",
                             "two_round_loading",
                             "use_two_round_loading"},
355
               "verbosity": {"verbosity",
356
357
358
                             "verbose"},
               "weight_column": {"weight_column",
                                 "weight"}}
359
360
361
362
363

    @classmethod
    def get(cls, *args):
        ret = set()
        for i in args:
364
            ret |= cls.aliases.get(i, {i})
365
366
367
        return ret


368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
def _choose_param_value(main_param_name: str, params: Dict[str, Any], default_value: Any) -> Dict[str, Any]:
    """Get a single parameter value, accounting for aliases.

    Parameters
    ----------
    main_param_name : str
        Name of the main parameter to get a value for. One of the keys of ``_ConfigAliases``.
    params : dict
        Dictionary of LightGBM parameters.
    default_value : Any
        Default value to use for the parameter, if none is found in ``params``.

    Returns
    -------
    params : dict
        A ``params`` dict with exactly one value for ``main_param_name``, and all aliases ``main_param_name`` removed.
        If both ``main_param_name`` and one or more aliases for it are found, the value of ``main_param_name`` will be preferred.
    """
    # avoid side effects on passed-in parameters
    params = deepcopy(params)

    # find a value, and remove other aliases with .pop()
    # prefer the value of 'main_param_name' if it exists, otherwise search the aliases
    found_value = None
    if main_param_name in params.keys():
        found_value = params[main_param_name]

    for param in _ConfigAliases.get(main_param_name):
        val = params.pop(param, None)
        if found_value is None and val is not None:
            found_value = val

    if found_value is not None:
        params[main_param_name] = found_value
    else:
        params[main_param_name] = default_value

    return params


408
409
MAX_INT32 = (1 << 31) - 1

410
"""Macro definition of data type in C API of LightGBM"""
wxchan's avatar
wxchan committed
411
412
413
414
C_API_DTYPE_FLOAT32 = 0
C_API_DTYPE_FLOAT64 = 1
C_API_DTYPE_INT32 = 2
C_API_DTYPE_INT64 = 3
Guolin Ke's avatar
Guolin Ke committed
415

416
"""Matrix is row major in Python"""
wxchan's avatar
wxchan committed
417
418
C_API_IS_ROW_MAJOR = 1

419
"""Macro definition of prediction type in C API of LightGBM"""
wxchan's avatar
wxchan committed
420
421
422
C_API_PREDICT_NORMAL = 0
C_API_PREDICT_RAW_SCORE = 1
C_API_PREDICT_LEAF_INDEX = 2
423
C_API_PREDICT_CONTRIB = 3
wxchan's avatar
wxchan committed
424

425
426
427
428
"""Macro definition of sparse matrix type"""
C_API_MATRIX_TYPE_CSR = 0
C_API_MATRIX_TYPE_CSC = 1

429
430
431
432
"""Macro definition of feature importance type"""
C_API_FEATURE_IMPORTANCE_SPLIT = 0
C_API_FEATURE_IMPORTANCE_GAIN = 1

433
"""Data type of data field"""
wxchan's avatar
wxchan committed
434
435
FIELD_TYPE_MAPPER = {"label": C_API_DTYPE_FLOAT32,
                     "weight": C_API_DTYPE_FLOAT32,
Guolin Ke's avatar
Guolin Ke committed
436
                     "init_score": C_API_DTYPE_FLOAT64,
437
                     "group": C_API_DTYPE_INT32}
wxchan's avatar
wxchan committed
438

439
440
441
442
"""String name to int feature importance type mapper"""
FEATURE_IMPORTANCE_TYPE_MAPPER = {"split": C_API_FEATURE_IMPORTANCE_SPLIT,
                                  "gain": C_API_FEATURE_IMPORTANCE_GAIN}

wxchan's avatar
wxchan committed
443

444
def convert_from_sliced_object(data):
445
    """Fix the memory of multi-dimensional sliced object."""
446
    if isinstance(data, np.ndarray) and isinstance(data.base, np.ndarray):
447
        if not data.flags.c_contiguous:
448
449
            _log_warning("Usage of np.ndarray subset (sliced data) is not recommended "
                         "due to it will double the peak memory cost in LightGBM.")
450
451
452
453
            return np.copy(data)
    return data


wxchan's avatar
wxchan committed
454
def c_float_array(data):
455
    """Get pointer of float numpy array / list."""
wxchan's avatar
wxchan committed
456
457
458
    if is_1d_list(data):
        data = np.array(data, copy=False)
    if is_numpy_1d_array(data):
459
460
        data = convert_from_sliced_object(data)
        assert data.flags.c_contiguous
wxchan's avatar
wxchan committed
461
462
463
464
465
466
467
        if data.dtype == np.float32:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_float))
            type_data = C_API_DTYPE_FLOAT32
        elif data.dtype == np.float64:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_double))
            type_data = C_API_DTYPE_FLOAT64
        else:
468
            raise TypeError("Expected np.float32 or np.float64, met type({})"
wxchan's avatar
wxchan committed
469
470
                            .format(data.dtype))
    else:
471
        raise TypeError("Unknown type({})".format(type(data).__name__))
472
    return (ptr_data, type_data, data)  # return `data` to avoid the temporary copy is freed
wxchan's avatar
wxchan committed
473

wxchan's avatar
wxchan committed
474

wxchan's avatar
wxchan committed
475
def c_int_array(data):
476
    """Get pointer of int numpy array / list."""
wxchan's avatar
wxchan committed
477
478
479
    if is_1d_list(data):
        data = np.array(data, copy=False)
    if is_numpy_1d_array(data):
480
481
        data = convert_from_sliced_object(data)
        assert data.flags.c_contiguous
wxchan's avatar
wxchan committed
482
483
484
485
486
487
488
        if data.dtype == np.int32:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_int32))
            type_data = C_API_DTYPE_INT32
        elif data.dtype == np.int64:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_int64))
            type_data = C_API_DTYPE_INT64
        else:
489
            raise TypeError("Expected np.int32 or np.int64, met type({})"
wxchan's avatar
wxchan committed
490
491
                            .format(data.dtype))
    else:
492
        raise TypeError("Unknown type({})".format(type(data).__name__))
493
    return (ptr_data, type_data, data)  # return `data` to avoid the temporary copy is freed
wxchan's avatar
wxchan committed
494

wxchan's avatar
wxchan committed
495

496
497
498
499
500
501
502
503
504
505
506
def _get_bad_pandas_dtypes(dtypes):
    pandas_dtype_mapper = {'int8': 'int', 'int16': 'int', 'int32': 'int',
                           'int64': 'int', 'uint8': 'int', 'uint16': 'int',
                           'uint32': 'int', 'uint64': 'int', 'bool': 'int',
                           'float16': 'float', 'float32': 'float', 'float64': 'float'}
    bad_indices = [i for i, dtype in enumerate(dtypes) if (dtype.name not in pandas_dtype_mapper
                                                           and (not is_dtype_sparse(dtype)
                                                                or dtype.subtype.name not in pandas_dtype_mapper))]
    return bad_indices


507
def _data_from_pandas(data, feature_name, categorical_feature, pandas_categorical):
508
    if isinstance(data, pd_DataFrame):
509
510
        if len(data.shape) != 2 or data.shape[0] < 1:
            raise ValueError('Input data must be 2 dimensional and non empty.')
511
512
        if feature_name == 'auto' or feature_name is None:
            data = data.rename(columns=str)
513
514
        cat_cols = list(data.select_dtypes(include=['category']).columns)
        cat_cols_not_ordered = [col for col in cat_cols if not data[col].cat.ordered]
515
516
517
518
519
        if pandas_categorical is None:  # train dataset
            pandas_categorical = [list(data[col].cat.categories) for col in cat_cols]
        else:
            if len(cat_cols) != len(pandas_categorical):
                raise ValueError('train and valid dataset categorical_feature do not match.')
520
            for col, category in zip(cat_cols, pandas_categorical):
521
522
                if list(data[col].cat.categories) != list(category):
                    data[col] = data[col].cat.set_categories(category)
523
        if len(cat_cols):  # cat_cols is list
524
            data = data.copy()  # not alter origin DataFrame
525
            data[cat_cols] = data[cat_cols].apply(lambda x: x.cat.codes).replace({-1: np.nan})
526
527
528
        if categorical_feature is not None:
            if feature_name is None:
                feature_name = list(data.columns)
529
            if categorical_feature == 'auto':  # use cat cols from DataFrame
530
                categorical_feature = cat_cols_not_ordered
531
532
            else:  # use cat cols specified by user
                categorical_feature = list(categorical_feature)
533
534
        if feature_name == 'auto':
            feature_name = list(data.columns)
535
536
        bad_indices = _get_bad_pandas_dtypes(data.dtypes)
        if bad_indices:
537
            raise ValueError("DataFrame.dtypes for data must be int, float or bool.\n"
538
                             "Did not expect the data types in the following fields: "
539
                             + ', '.join(data.columns[bad_indices]))
540
541
542
        data = data.values
        if data.dtype != np.float32 and data.dtype != np.float64:
            data = data.astype(np.float32)
543
544
545
546
547
548
    else:
        if feature_name == 'auto':
            feature_name = None
        if categorical_feature == 'auto':
            categorical_feature = None
    return data, feature_name, categorical_feature, pandas_categorical
549
550
551


def _label_from_pandas(label):
552
    if isinstance(label, pd_DataFrame):
553
554
        if len(label.columns) > 1:
            raise ValueError('DataFrame for label cannot have multiple columns')
555
        if _get_bad_pandas_dtypes(label.dtypes):
556
            raise ValueError('DataFrame.dtypes for label must be int, float or bool')
557
        label = np.ravel(label.values.astype(np.float32, copy=False))
558
559
560
    return label


561
562
563
564
565
566
567
568
569
570
571
def _dump_pandas_categorical(pandas_categorical, file_name=None):
    pandas_str = ('\npandas_categorical:'
                  + json.dumps(pandas_categorical, default=json_default_with_numpy)
                  + '\n')
    if file_name is not None:
        with open(file_name, 'a') as f:
            f.write(pandas_str)
    return pandas_str


def _load_pandas_categorical(file_name=None, model_str=None):
572
573
    pandas_key = 'pandas_categorical:'
    offset = -len(pandas_key)
574
    if file_name is not None:
575
576
577
578
579
580
581
582
583
584
        max_offset = -os.path.getsize(file_name)
        with open(file_name, 'rb') as f:
            while True:
                if offset < max_offset:
                    offset = max_offset
                f.seek(offset, os.SEEK_END)
                lines = f.readlines()
                if len(lines) >= 2:
                    break
                offset *= 2
585
        last_line = lines[-1].decode('utf-8').strip()
586
        if not last_line.startswith(pandas_key):
587
            last_line = lines[-2].decode('utf-8').strip()
588
    elif model_str is not None:
589
590
591
592
593
594
        idx = model_str.rfind('\n', 0, offset)
        last_line = model_str[idx:].strip()
    if last_line.startswith(pandas_key):
        return json.loads(last_line[len(pandas_key):])
    else:
        return None
595
596


597
class _InnerPredictor:
598
599
600
601
602
    """_InnerPredictor of LightGBM.

    Not exposed to user.
    Used only for prediction, usually used for continued training.

Nikita Titov's avatar
Nikita Titov committed
603
604
605
    .. note::

        Can be converted from Booster, but cannot be converted to Booster.
Guolin Ke's avatar
Guolin Ke committed
606
    """
607

608
    def __init__(self, model_file=None, booster_handle=None, pred_parameter=None):
609
        """Initialize the _InnerPredictor.
wxchan's avatar
wxchan committed
610
611
612

        Parameters
        ----------
613
        model_file : string or None, optional (default=None)
wxchan's avatar
wxchan committed
614
            Path to the model file.
615
616
617
618
        booster_handle : object or None, optional (default=None)
            Handle of Booster.
        pred_parameter: dict or None, optional (default=None)
            Other parameters for the prediciton.
wxchan's avatar
wxchan committed
619
620
621
622
623
        """
        self.handle = ctypes.c_void_p()
        self.__is_manage_handle = True
        if model_file is not None:
            """Prediction task"""
Guolin Ke's avatar
Guolin Ke committed
624
            out_num_iterations = ctypes.c_int(0)
wxchan's avatar
wxchan committed
625
626
627
628
            _safe_call(_LIB.LGBM_BoosterCreateFromModelfile(
                c_str(model_file),
                ctypes.byref(out_num_iterations),
                ctypes.byref(self.handle)))
Guolin Ke's avatar
Guolin Ke committed
629
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
630
631
632
633
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
                self.handle,
                ctypes.byref(out_num_class)))
            self.num_class = out_num_class.value
634
            self.num_total_iteration = out_num_iterations.value
635
            self.pandas_categorical = _load_pandas_categorical(file_name=model_file)
wxchan's avatar
wxchan committed
636
        elif booster_handle is not None:
Guolin Ke's avatar
Guolin Ke committed
637
            self.__is_manage_handle = False
wxchan's avatar
wxchan committed
638
            self.handle = booster_handle
Guolin Ke's avatar
Guolin Ke committed
639
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
640
641
642
643
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
                self.handle,
                ctypes.byref(out_num_class)))
            self.num_class = out_num_class.value
644
            self.num_total_iteration = self.current_iteration()
645
            self.pandas_categorical = None
wxchan's avatar
wxchan committed
646
        else:
647
            raise TypeError('Need model_file or booster_handle to create a predictor')
wxchan's avatar
wxchan committed
648

649
650
        pred_parameter = {} if pred_parameter is None else pred_parameter
        self.pred_parameter = param_dict_to_str(pred_parameter)
cbecker's avatar
cbecker committed
651

wxchan's avatar
wxchan committed
652
    def __del__(self):
653
654
655
656
657
        try:
            if self.__is_manage_handle:
                _safe_call(_LIB.LGBM_BoosterFree(self.handle))
        except AttributeError:
            pass
wxchan's avatar
wxchan committed
658

659
660
661
662
663
    def __getstate__(self):
        this = self.__dict__.copy()
        this.pop('handle', None)
        return this

664
    def predict(self, data, start_iteration=0, num_iteration=-1,
665
                raw_score=False, pred_leaf=False, pred_contrib=False, data_has_header=False,
wxchan's avatar
wxchan committed
666
                is_reshape=True):
667
        """Predict logic.
wxchan's avatar
wxchan committed
668
669
670

        Parameters
        ----------
671
        data : string, numpy array, pandas DataFrame, H2O DataTable's Frame or scipy.sparse
672
673
            Data source for prediction.
            When data type is string, it represents the path of txt file.
674
675
        start_iteration : int, optional (default=0)
            Start index of the iteration to predict.
676
677
678
679
680
681
682
683
684
685
686
687
688
        num_iteration : int, optional (default=-1)
            Iteration used for prediction.
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        pred_leaf : bool, optional (default=False)
            Whether to predict leaf index.
        pred_contrib : bool, optional (default=False)
            Whether to predict feature contributions.
        data_has_header : bool, optional (default=False)
            Whether data has header.
            Used only for txt data.
        is_reshape : bool, optional (default=True)
            Whether to reshape to (nrow, ncol).
wxchan's avatar
wxchan committed
689
690
691

        Returns
        -------
692
        result : numpy array, scipy.sparse or list of scipy.sparse
693
            Prediction result.
694
            Can be sparse or a list of sparse objects (each element represents predictions for one class) for feature contributions (when ``pred_contrib=True``).
wxchan's avatar
wxchan committed
695
        """
wxchan's avatar
wxchan committed
696
        if isinstance(data, Dataset):
697
            raise TypeError("Cannot use Dataset instance for prediction, please use raw data instead")
698
        data = _data_from_pandas(data, None, None, self.pandas_categorical)[0]
wxchan's avatar
wxchan committed
699
700
701
702
703
        predict_type = C_API_PREDICT_NORMAL
        if raw_score:
            predict_type = C_API_PREDICT_RAW_SCORE
        if pred_leaf:
            predict_type = C_API_PREDICT_LEAF_INDEX
704
705
        if pred_contrib:
            predict_type = C_API_PREDICT_CONTRIB
wxchan's avatar
wxchan committed
706
        int_data_has_header = 1 if data_has_header else 0
cbecker's avatar
cbecker committed
707

708
        if isinstance(data, str):
709
            with _TempFile() as f:
wxchan's avatar
wxchan committed
710
711
712
                _safe_call(_LIB.LGBM_BoosterPredictForFile(
                    self.handle,
                    c_str(data),
Guolin Ke's avatar
Guolin Ke committed
713
714
                    ctypes.c_int(int_data_has_header),
                    ctypes.c_int(predict_type),
715
                    ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
716
                    ctypes.c_int(num_iteration),
717
                    c_str(self.pred_parameter),
wxchan's avatar
wxchan committed
718
719
                    c_str(f.name)))
                lines = f.readlines()
720
721
                nrow = len(lines)
                preds = [float(token) for line in lines for token in line.split('\t')]
Guolin Ke's avatar
Guolin Ke committed
722
                preds = np.array(preds, dtype=np.float64, copy=False)
wxchan's avatar
wxchan committed
723
        elif isinstance(data, scipy.sparse.csr_matrix):
724
            preds, nrow = self.__pred_for_csr(data, start_iteration, num_iteration, predict_type)
Guolin Ke's avatar
Guolin Ke committed
725
        elif isinstance(data, scipy.sparse.csc_matrix):
726
            preds, nrow = self.__pred_for_csc(data, start_iteration, num_iteration, predict_type)
wxchan's avatar
wxchan committed
727
        elif isinstance(data, np.ndarray):
728
            preds, nrow = self.__pred_for_np2d(data, start_iteration, num_iteration, predict_type)
729
730
731
        elif isinstance(data, list):
            try:
                data = np.array(data)
732
            except BaseException:
733
                raise ValueError('Cannot convert data list to numpy array.')
734
            preds, nrow = self.__pred_for_np2d(data, start_iteration, num_iteration, predict_type)
735
        elif isinstance(data, dt_DataTable):
736
            preds, nrow = self.__pred_for_np2d(data.to_numpy(), start_iteration, num_iteration, predict_type)
wxchan's avatar
wxchan committed
737
738
        else:
            try:
739
                _log_warning('Converting data to scipy sparse matrix.')
wxchan's avatar
wxchan committed
740
                csr = scipy.sparse.csr_matrix(data)
741
            except BaseException:
742
                raise TypeError('Cannot predict data for type {}'.format(type(data).__name__))
743
            preds, nrow = self.__pred_for_csr(csr, start_iteration, num_iteration, predict_type)
wxchan's avatar
wxchan committed
744
745
        if pred_leaf:
            preds = preds.astype(np.int32)
746
747
        is_sparse = scipy.sparse.issparse(preds) or isinstance(preds, list)
        if is_reshape and not is_sparse and preds.size != nrow:
wxchan's avatar
wxchan committed
748
            if preds.size % nrow == 0:
749
                preds = preds.reshape(nrow, -1)
wxchan's avatar
wxchan committed
750
            else:
751
                raise ValueError('Length of predict result (%d) cannot be divide nrow (%d)'
wxchan's avatar
wxchan committed
752
753
754
                                 % (preds.size, nrow))
        return preds

755
    def __get_num_preds(self, start_iteration, num_iteration, nrow, predict_type):
756
        """Get size of prediction result."""
757
758
759
760
761
        if nrow > MAX_INT32:
            raise LightGBMError('LightGBM cannot perform prediction for data'
                                'with number of rows greater than MAX_INT32 (%d).\n'
                                'You can split your data into chunks'
                                'and then concatenate predictions for them' % MAX_INT32)
Guolin Ke's avatar
Guolin Ke committed
762
763
764
        n_preds = ctypes.c_int64(0)
        _safe_call(_LIB.LGBM_BoosterCalcNumPredict(
            self.handle,
Guolin Ke's avatar
Guolin Ke committed
765
766
            ctypes.c_int(nrow),
            ctypes.c_int(predict_type),
767
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
768
            ctypes.c_int(num_iteration),
Guolin Ke's avatar
Guolin Ke committed
769
770
            ctypes.byref(n_preds)))
        return n_preds.value
wxchan's avatar
wxchan committed
771

772
    def __pred_for_np2d(self, mat, start_iteration, num_iteration, predict_type):
773
        """Predict for a 2-D numpy matrix."""
wxchan's avatar
wxchan committed
774
        if len(mat.shape) != 2:
775
            raise ValueError('Input numpy.ndarray or list must be 2 dimensional')
wxchan's avatar
wxchan committed
776

777
        def inner_predict(mat, start_iteration, num_iteration, predict_type, preds=None):
778
779
            if mat.dtype == np.float32 or mat.dtype == np.float64:
                data = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
780
            else:  # change non-float data to float data, need to copy
781
782
                data = np.array(mat.reshape(mat.size), dtype=np.float32)
            ptr_data, type_ptr_data, _ = c_float_array(data)
783
            n_preds = self.__get_num_preds(start_iteration, num_iteration, mat.shape[0], predict_type)
784
785
786
787
788
789
790
791
792
793
794
795
796
            if preds is None:
                preds = np.zeros(n_preds, dtype=np.float64)
            elif len(preds.shape) != 1 or len(preds) != n_preds:
                raise ValueError("Wrong length of pre-allocated predict array")
            out_num_preds = ctypes.c_int64(0)
            _safe_call(_LIB.LGBM_BoosterPredictForMat(
                self.handle,
                ptr_data,
                ctypes.c_int(type_ptr_data),
                ctypes.c_int(mat.shape[0]),
                ctypes.c_int(mat.shape[1]),
                ctypes.c_int(C_API_IS_ROW_MAJOR),
                ctypes.c_int(predict_type),
797
                ctypes.c_int(start_iteration),
798
799
800
801
802
803
804
805
806
807
808
809
                ctypes.c_int(num_iteration),
                c_str(self.pred_parameter),
                ctypes.byref(out_num_preds),
                preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
            if n_preds != out_num_preds.value:
                raise ValueError("Wrong length for predict results")
            return preds, mat.shape[0]

        nrow = mat.shape[0]
        if nrow > MAX_INT32:
            sections = np.arange(start=MAX_INT32, stop=nrow, step=MAX_INT32)
            # __get_num_preds() cannot work with nrow > MAX_INT32, so calculate overall number of predictions piecemeal
810
            n_preds = [self.__get_num_preds(start_iteration, num_iteration, i, predict_type) for i in np.diff([0] + list(sections) + [nrow])]
811
812
            n_preds_sections = np.array([0] + n_preds, dtype=np.intp).cumsum()
            preds = np.zeros(sum(n_preds), dtype=np.float64)
813
814
            for chunk, (start_idx_pred, end_idx_pred) in zip(np.array_split(mat, sections),
                                                             zip(n_preds_sections, n_preds_sections[1:])):
815
                # avoid memory consumption by arrays concatenation operations
816
                inner_predict(chunk, start_iteration, num_iteration, predict_type, preds[start_idx_pred:end_idx_pred])
817
            return preds, nrow
wxchan's avatar
wxchan committed
818
        else:
819
            return inner_predict(mat, start_iteration, num_iteration, predict_type)
wxchan's avatar
wxchan committed
820

821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
    def __create_sparse_native(self, cs, out_shape, out_ptr_indptr, out_ptr_indices, out_ptr_data,
                               indptr_type, data_type, is_csr=True):
        # create numpy array from output arrays
        data_indices_len = out_shape[0]
        indptr_len = out_shape[1]
        if indptr_type == C_API_DTYPE_INT32:
            out_indptr = cint32_array_to_numpy(out_ptr_indptr, indptr_len)
        elif indptr_type == C_API_DTYPE_INT64:
            out_indptr = cint64_array_to_numpy(out_ptr_indptr, indptr_len)
        else:
            raise TypeError("Expected int32 or int64 type for indptr")
        if data_type == C_API_DTYPE_FLOAT32:
            out_data = cfloat32_array_to_numpy(out_ptr_data, data_indices_len)
        elif data_type == C_API_DTYPE_FLOAT64:
            out_data = cfloat64_array_to_numpy(out_ptr_data, data_indices_len)
        else:
            raise TypeError("Expected float32 or float64 type for data")
        out_indices = cint32_array_to_numpy(out_ptr_indices, data_indices_len)
        # break up indptr based on number of rows (note more than one matrix in multiclass case)
        per_class_indptr_shape = cs.indptr.shape[0]
        # for CSC there is extra column added
        if not is_csr:
            per_class_indptr_shape += 1
        out_indptr_arrays = np.split(out_indptr, out_indptr.shape[0] / per_class_indptr_shape)
        # reformat output into a csr or csc matrix or list of csr or csc matrices
        cs_output_matrices = []
        offset = 0
        for cs_indptr in out_indptr_arrays:
            matrix_indptr_len = cs_indptr[cs_indptr.shape[0] - 1]
            cs_indices = out_indices[offset + cs_indptr[0]:offset + matrix_indptr_len]
            cs_data = out_data[offset + cs_indptr[0]:offset + matrix_indptr_len]
            offset += matrix_indptr_len
            # same shape as input csr or csc matrix except extra column for expected value
            cs_shape = [cs.shape[0], cs.shape[1] + 1]
            # note: make sure we copy data as it will be deallocated next
            if is_csr:
                cs_output_matrices.append(scipy.sparse.csr_matrix((cs_data, cs_indices, cs_indptr), cs_shape))
            else:
                cs_output_matrices.append(scipy.sparse.csc_matrix((cs_data, cs_indices, cs_indptr), cs_shape))
        # free the temporary native indptr, indices, and data
        _safe_call(_LIB.LGBM_BoosterFreePredictSparse(out_ptr_indptr, out_ptr_indices, out_ptr_data,
                                                      ctypes.c_int(indptr_type), ctypes.c_int(data_type)))
        if len(cs_output_matrices) == 1:
            return cs_output_matrices[0]
        return cs_output_matrices

867
    def __pred_for_csr(self, csr, start_iteration, num_iteration, predict_type):
868
        """Predict for a CSR data."""
869
        def inner_predict(csr, start_iteration, num_iteration, predict_type, preds=None):
870
            nrow = len(csr.indptr) - 1
871
            n_preds = self.__get_num_preds(start_iteration, num_iteration, nrow, predict_type)
872
873
874
875
876
877
878
879
880
            if preds is None:
                preds = np.zeros(n_preds, dtype=np.float64)
            elif len(preds.shape) != 1 or len(preds) != n_preds:
                raise ValueError("Wrong length of pre-allocated predict array")
            out_num_preds = ctypes.c_int64(0)

            ptr_indptr, type_ptr_indptr, __ = c_int_array(csr.indptr)
            ptr_data, type_ptr_data, _ = c_float_array(csr.data)

881
            assert csr.shape[1] <= MAX_INT32
882
            csr_indices = csr.indices.astype(np.int32, copy=False)
883

884
885
886
887
            _safe_call(_LIB.LGBM_BoosterPredictForCSR(
                self.handle,
                ptr_indptr,
                ctypes.c_int32(type_ptr_indptr),
888
                csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
889
890
891
892
893
894
                ptr_data,
                ctypes.c_int(type_ptr_data),
                ctypes.c_int64(len(csr.indptr)),
                ctypes.c_int64(len(csr.data)),
                ctypes.c_int64(csr.shape[1]),
                ctypes.c_int(predict_type),
895
                ctypes.c_int(start_iteration),
896
897
898
899
900
901
902
                ctypes.c_int(num_iteration),
                c_str(self.pred_parameter),
                ctypes.byref(out_num_preds),
                preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
            if n_preds != out_num_preds.value:
                raise ValueError("Wrong length for predict results")
            return preds, nrow
wxchan's avatar
wxchan committed
903

904
        def inner_predict_sparse(csr, start_iteration, num_iteration, predict_type):
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
            ptr_indptr, type_ptr_indptr, __ = c_int_array(csr.indptr)
            ptr_data, type_ptr_data, _ = c_float_array(csr.data)
            csr_indices = csr.indices.astype(np.int32, copy=False)
            matrix_type = C_API_MATRIX_TYPE_CSR
            if type_ptr_indptr == C_API_DTYPE_INT32:
                out_ptr_indptr = ctypes.POINTER(ctypes.c_int32)()
            else:
                out_ptr_indptr = ctypes.POINTER(ctypes.c_int64)()
            out_ptr_indices = ctypes.POINTER(ctypes.c_int32)()
            if type_ptr_data == C_API_DTYPE_FLOAT32:
                out_ptr_data = ctypes.POINTER(ctypes.c_float)()
            else:
                out_ptr_data = ctypes.POINTER(ctypes.c_double)()
            out_shape = np.zeros(2, dtype=np.int64)
            _safe_call(_LIB.LGBM_BoosterPredictSparseOutput(
                self.handle,
                ptr_indptr,
                ctypes.c_int32(type_ptr_indptr),
                csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
                ptr_data,
                ctypes.c_int(type_ptr_data),
                ctypes.c_int64(len(csr.indptr)),
                ctypes.c_int64(len(csr.data)),
                ctypes.c_int64(csr.shape[1]),
                ctypes.c_int(predict_type),
930
                ctypes.c_int(start_iteration),
931
932
933
934
935
936
937
938
939
940
941
942
943
                ctypes.c_int(num_iteration),
                c_str(self.pred_parameter),
                ctypes.c_int(matrix_type),
                out_shape.ctypes.data_as(ctypes.POINTER(ctypes.c_int64)),
                ctypes.byref(out_ptr_indptr),
                ctypes.byref(out_ptr_indices),
                ctypes.byref(out_ptr_data)))
            matrices = self.__create_sparse_native(csr, out_shape, out_ptr_indptr, out_ptr_indices, out_ptr_data,
                                                   type_ptr_indptr, type_ptr_data, is_csr=True)
            nrow = len(csr.indptr) - 1
            return matrices, nrow

        if predict_type == C_API_PREDICT_CONTRIB:
944
            return inner_predict_sparse(csr, start_iteration, num_iteration, predict_type)
945
946
947
948
        nrow = len(csr.indptr) - 1
        if nrow > MAX_INT32:
            sections = [0] + list(np.arange(start=MAX_INT32, stop=nrow, step=MAX_INT32)) + [nrow]
            # __get_num_preds() cannot work with nrow > MAX_INT32, so calculate overall number of predictions piecemeal
949
            n_preds = [self.__get_num_preds(start_iteration, num_iteration, i, predict_type) for i in np.diff(sections)]
950
951
            n_preds_sections = np.array([0] + n_preds, dtype=np.intp).cumsum()
            preds = np.zeros(sum(n_preds), dtype=np.float64)
952
953
            for (start_idx, end_idx), (start_idx_pred, end_idx_pred) in zip(zip(sections, sections[1:]),
                                                                            zip(n_preds_sections, n_preds_sections[1:])):
954
                # avoid memory consumption by arrays concatenation operations
955
                inner_predict(csr[start_idx:end_idx], start_iteration, num_iteration, predict_type, preds[start_idx_pred:end_idx_pred])
956
957
            return preds, nrow
        else:
958
            return inner_predict(csr, start_iteration, num_iteration, predict_type)
Guolin Ke's avatar
Guolin Ke committed
959

960
    def __pred_for_csc(self, csc, start_iteration, num_iteration, predict_type):
961
        """Predict for a CSC data."""
962
        def inner_predict_sparse(csc, start_iteration, num_iteration, predict_type):
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
            ptr_indptr, type_ptr_indptr, __ = c_int_array(csc.indptr)
            ptr_data, type_ptr_data, _ = c_float_array(csc.data)
            csc_indices = csc.indices.astype(np.int32, copy=False)
            matrix_type = C_API_MATRIX_TYPE_CSC
            if type_ptr_indptr == C_API_DTYPE_INT32:
                out_ptr_indptr = ctypes.POINTER(ctypes.c_int32)()
            else:
                out_ptr_indptr = ctypes.POINTER(ctypes.c_int64)()
            out_ptr_indices = ctypes.POINTER(ctypes.c_int32)()
            if type_ptr_data == C_API_DTYPE_FLOAT32:
                out_ptr_data = ctypes.POINTER(ctypes.c_float)()
            else:
                out_ptr_data = ctypes.POINTER(ctypes.c_double)()
            out_shape = np.zeros(2, dtype=np.int64)
            _safe_call(_LIB.LGBM_BoosterPredictSparseOutput(
                self.handle,
                ptr_indptr,
                ctypes.c_int32(type_ptr_indptr),
                csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
                ptr_data,
                ctypes.c_int(type_ptr_data),
                ctypes.c_int64(len(csc.indptr)),
                ctypes.c_int64(len(csc.data)),
                ctypes.c_int64(csc.shape[0]),
                ctypes.c_int(predict_type),
988
                ctypes.c_int(start_iteration),
989
990
991
992
993
994
995
996
997
998
999
1000
                ctypes.c_int(num_iteration),
                c_str(self.pred_parameter),
                ctypes.c_int(matrix_type),
                out_shape.ctypes.data_as(ctypes.POINTER(ctypes.c_int64)),
                ctypes.byref(out_ptr_indptr),
                ctypes.byref(out_ptr_indices),
                ctypes.byref(out_ptr_data)))
            matrices = self.__create_sparse_native(csc, out_shape, out_ptr_indptr, out_ptr_indices, out_ptr_data,
                                                   type_ptr_indptr, type_ptr_data, is_csr=False)
            nrow = csc.shape[0]
            return matrices, nrow

Guolin Ke's avatar
Guolin Ke committed
1001
        nrow = csc.shape[0]
1002
        if nrow > MAX_INT32:
1003
            return self.__pred_for_csr(csc.tocsr(), start_iteration, num_iteration, predict_type)
1004
        if predict_type == C_API_PREDICT_CONTRIB:
1005
1006
            return inner_predict_sparse(csc, start_iteration, num_iteration, predict_type)
        n_preds = self.__get_num_preds(start_iteration, num_iteration, nrow, predict_type)
Guolin Ke's avatar
Guolin Ke committed
1007
1008
1009
        preds = np.zeros(n_preds, dtype=np.float64)
        out_num_preds = ctypes.c_int64(0)

1010
1011
        ptr_indptr, type_ptr_indptr, __ = c_int_array(csc.indptr)
        ptr_data, type_ptr_data, _ = c_float_array(csc.data)
Guolin Ke's avatar
Guolin Ke committed
1012

1013
        assert csc.shape[0] <= MAX_INT32
1014
        csc_indices = csc.indices.astype(np.int32, copy=False)
1015

Guolin Ke's avatar
Guolin Ke committed
1016
1017
1018
        _safe_call(_LIB.LGBM_BoosterPredictForCSC(
            self.handle,
            ptr_indptr,
Guolin Ke's avatar
Guolin Ke committed
1019
            ctypes.c_int32(type_ptr_indptr),
1020
            csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
Guolin Ke's avatar
Guolin Ke committed
1021
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1022
1023
1024
1025
1026
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csc.indptr)),
            ctypes.c_int64(len(csc.data)),
            ctypes.c_int64(csc.shape[0]),
            ctypes.c_int(predict_type),
1027
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
1028
            ctypes.c_int(num_iteration),
1029
            c_str(self.pred_parameter),
Guolin Ke's avatar
Guolin Ke committed
1030
            ctypes.byref(out_num_preds),
wxchan's avatar
wxchan committed
1031
            preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
wxchan's avatar
wxchan committed
1032
        if n_preds != out_num_preds.value:
1033
            raise ValueError("Wrong length for predict results")
wxchan's avatar
wxchan committed
1034
1035
        return preds, nrow

1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
    def current_iteration(self):
        """Get the index of the current iteration.

        Returns
        -------
        cur_iter : int
            The index of the current iteration.
        """
        out_cur_iter = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetCurrentIteration(
            self.handle,
            ctypes.byref(out_cur_iter)))
        return out_cur_iter.value

wxchan's avatar
wxchan committed
1050

1051
class Dataset:
wxchan's avatar
wxchan committed
1052
    """Dataset in LightGBM."""
1053

1054
    def __init__(self, data, label=None, reference=None,
1055
                 weight=None, group=None, init_score=None, silent=False,
1056
                 feature_name='auto', categorical_feature='auto', params=None,
wxchan's avatar
wxchan committed
1057
                 free_raw_data=True):
1058
        """Initialize Dataset.
1059

wxchan's avatar
wxchan committed
1060
1061
        Parameters
        ----------
1062
        data : string, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse or list of numpy arrays
wxchan's avatar
wxchan committed
1063
            Data source of Dataset.
1064
            If string, it represents the path to txt file.
1065
        label : list, numpy 1-D array, pandas Series / one-column DataFrame or None, optional (default=None)
1066
1067
1068
            Label of the data.
        reference : Dataset or None, optional (default=None)
            If this is Dataset for validation, training data should be used as reference.
1069
        weight : list, numpy 1-D array, pandas Series or None, optional (default=None)
wxchan's avatar
wxchan committed
1070
            Weight for each instance.
1071
        group : list, numpy 1-D array, pandas Series or None, optional (default=None)
1072
1073
1074
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
1075
1076
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
1077
        init_score : list, numpy 1-D array, pandas Series or None, optional (default=None)
1078
            Init score for Dataset.
1079
1080
1081
1082
1083
1084
1085
1086
1087
        silent : bool, optional (default=False)
            Whether to print messages during construction.
        feature_name : list of strings or 'auto', optional (default="auto")
            Feature names.
            If 'auto' and data is pandas DataFrame, data columns names are used.
        categorical_feature : list of strings or int, or 'auto', optional (default="auto")
            Categorical features.
            If list of int, interpreted as indices.
            If list of strings, interpreted as feature names (need to specify ``feature_name`` as well).
1088
            If 'auto' and data is pandas DataFrame, pandas unordered categorical columns are used.
1089
            All values in categorical features should be less than int32 max value (2147483647).
1090
            Large values could be memory consuming. Consider using consecutive integers starting from zero.
1091
            All negative values in categorical features will be treated as missing values.
1092
            The output cannot be monotonically constrained with respect to a categorical feature.
Nikita Titov's avatar
Nikita Titov committed
1093
        params : dict or None, optional (default=None)
1094
            Other parameters for Dataset.
Nikita Titov's avatar
Nikita Titov committed
1095
        free_raw_data : bool, optional (default=True)
1096
            If True, raw data is freed after constructing inner Dataset.
wxchan's avatar
wxchan committed
1097
        """
wxchan's avatar
wxchan committed
1098
1099
1100
1101
1102
1103
        self.handle = None
        self.data = data
        self.label = label
        self.reference = reference
        self.weight = weight
        self.group = group
1104
        self.init_score = init_score
wxchan's avatar
wxchan committed
1105
1106
        self.silent = silent
        self.feature_name = feature_name
1107
        self.categorical_feature = categorical_feature
1108
        self.params = deepcopy(params)
wxchan's avatar
wxchan committed
1109
1110
        self.free_raw_data = free_raw_data
        self.used_indices = None
1111
        self.need_slice = True
wxchan's avatar
wxchan committed
1112
        self._predictor = None
1113
        self.pandas_categorical = None
1114
        self.params_back_up = None
1115
1116
        self.feature_penalty = None
        self.monotone_constraints = None
1117
        self.version = 0
wxchan's avatar
wxchan committed
1118
1119

    def __del__(self):
1120
1121
1122
1123
        try:
            self._free_handle()
        except AttributeError:
            pass
1124

1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
    def get_params(self):
        """Get the used parameters in the Dataset.

        Returns
        -------
        params : dict or None
            The used parameters in this Dataset object.
        """
        if self.params is not None:
            # no min_data, nthreads and verbose in this function
            dataset_params = _ConfigAliases.get("bin_construct_sample_cnt",
                                                "categorical_feature",
                                                "data_random_seed",
                                                "enable_bundle",
                                                "feature_pre_filter",
                                                "forcedbins_filename",
                                                "group_column",
                                                "header",
                                                "ignore_column",
                                                "is_enable_sparse",
                                                "label_column",
1146
                                                "linear_tree",
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
                                                "max_bin",
                                                "max_bin_by_feature",
                                                "min_data_in_bin",
                                                "pre_partition",
                                                "two_round",
                                                "use_missing",
                                                "weight_column",
                                                "zero_as_missing")
            return {k: v for k, v in self.params.items() if k in dataset_params}

1157
    def _free_handle(self):
1158
        if self.handle is not None:
1159
            _safe_call(_LIB.LGBM_DatasetFree(self.handle))
1160
            self.handle = None
Guolin Ke's avatar
Guolin Ke committed
1161
1162
1163
        self.need_slice = True
        if self.used_indices is not None:
            self.data = None
Nikita Titov's avatar
Nikita Titov committed
1164
        return self
wxchan's avatar
wxchan committed
1165

Guolin Ke's avatar
Guolin Ke committed
1166
1167
    def _set_init_score_by_predictor(self, predictor, data, used_indices=None):
        data_has_header = False
1168
        if isinstance(data, str):
Guolin Ke's avatar
Guolin Ke committed
1169
            # check data has header or not
1170
            data_has_header = any(self.params.get(alias, False) for alias in _ConfigAliases.get("header"))
Guolin Ke's avatar
Guolin Ke committed
1171
        num_data = self.num_data()
1172
1173
1174
1175
1176
1177
1178
        if predictor is not None:
            init_score = predictor.predict(data,
                                           raw_score=True,
                                           data_has_header=data_has_header,
                                           is_reshape=False)
            if used_indices is not None:
                assert not self.need_slice
1179
                if isinstance(data, str):
1180
1181
                    sub_init_score = np.zeros(num_data * predictor.num_class, dtype=np.float32)
                    assert num_data == len(used_indices)
1182
1183
                    for i in range(len(used_indices)):
                        for j in range(predictor.num_class):
1184
1185
1186
1187
1188
                            sub_init_score[i * predictor.num_class + j] = init_score[used_indices[i] * predictor.num_class + j]
                    init_score = sub_init_score
            if predictor.num_class > 1:
                # need to regroup init_score
                new_init_score = np.zeros(init_score.size, dtype=np.float32)
1189
1190
                for i in range(num_data):
                    for j in range(predictor.num_class):
1191
1192
1193
1194
1195
1196
                        new_init_score[j * num_data + i] = init_score[i * predictor.num_class + j]
                init_score = new_init_score
        elif self.init_score is not None:
            init_score = np.zeros(self.init_score.shape, dtype=np.float32)
        else:
            return self
Guolin Ke's avatar
Guolin Ke committed
1197
1198
        self.set_init_score(init_score)

1199
    def _lazy_init(self, data, label=None, reference=None,
1200
                   weight=None, group=None, init_score=None, predictor=None,
wxchan's avatar
wxchan committed
1201
                   silent=False, feature_name='auto',
1202
                   categorical_feature='auto', params=None):
wxchan's avatar
wxchan committed
1203
1204
        if data is None:
            self.handle = None
Nikita Titov's avatar
Nikita Titov committed
1205
            return self
Guolin Ke's avatar
Guolin Ke committed
1206
1207
1208
        if reference is not None:
            self.pandas_categorical = reference.pandas_categorical
            categorical_feature = reference.categorical_feature
1209
1210
1211
1212
        data, feature_name, categorical_feature, self.pandas_categorical = _data_from_pandas(data,
                                                                                             feature_name,
                                                                                             categorical_feature,
                                                                                             self.pandas_categorical)
wxchan's avatar
wxchan committed
1213
        label = _label_from_pandas(label)
Guolin Ke's avatar
Guolin Ke committed
1214

1215
        # process for args
wxchan's avatar
wxchan committed
1216
        params = {} if params is None else params
1217
1218
1219
        args_names = (getattr(self.__class__, '_lazy_init')
                      .__code__
                      .co_varnames[:getattr(self.__class__, '_lazy_init').__code__.co_argcount])
1220
1221
        for key, _ in params.items():
            if key in args_names:
1222
1223
1224
                _log_warning('{0} keyword has been found in `params` and will be ignored.\n'
                             'Please use {0} argument of the Dataset constructor to pass this parameter.'
                             .format(key))
1225
        # user can set verbose with params, it has higher priority
1226
        if not any(verbose_alias in params for verbose_alias in _ConfigAliases.get("verbosity")) and silent:
1227
            params["verbose"] = -1
1228
        # get categorical features
1229
1230
1231
1232
1233
1234
        if categorical_feature is not None:
            categorical_indices = set()
            feature_dict = {}
            if feature_name is not None:
                feature_dict = {name: i for i, name in enumerate(feature_name)}
            for name in categorical_feature:
1235
                if isinstance(name, str) and name in feature_dict:
1236
                    categorical_indices.add(feature_dict[name])
1237
                elif isinstance(name, int):
1238
1239
1240
1241
                    categorical_indices.add(name)
                else:
                    raise TypeError("Wrong type({}) or unknown name({}) in categorical_feature"
                                    .format(type(name).__name__, name))
1242
            if categorical_indices:
1243
1244
                for cat_alias in _ConfigAliases.get("categorical_feature"):
                    if cat_alias in params:
1245
                        _log_warning('{} in param dict is overridden.'.format(cat_alias))
1246
                        params.pop(cat_alias, None)
1247
                params['categorical_column'] = sorted(categorical_indices)
1248

wxchan's avatar
wxchan committed
1249
        params_str = param_dict_to_str(params)
1250
        self.params = params
1251
        # process for reference dataset
wxchan's avatar
wxchan committed
1252
        ref_dataset = None
wxchan's avatar
wxchan committed
1253
        if isinstance(reference, Dataset):
1254
            ref_dataset = reference.construct().handle
wxchan's avatar
wxchan committed
1255
1256
        elif reference is not None:
            raise TypeError('Reference dataset should be None or dataset instance')
1257
        # start construct data
1258
        if isinstance(data, str):
wxchan's avatar
wxchan committed
1259
1260
1261
1262
1263
1264
1265
1266
            self.handle = ctypes.c_void_p()
            _safe_call(_LIB.LGBM_DatasetCreateFromFile(
                c_str(data),
                c_str(params_str),
                ref_dataset,
                ctypes.byref(self.handle)))
        elif isinstance(data, scipy.sparse.csr_matrix):
            self.__init_from_csr(data, params_str, ref_dataset)
Guolin Ke's avatar
Guolin Ke committed
1267
1268
        elif isinstance(data, scipy.sparse.csc_matrix):
            self.__init_from_csc(data, params_str, ref_dataset)
wxchan's avatar
wxchan committed
1269
1270
        elif isinstance(data, np.ndarray):
            self.__init_from_np2d(data, params_str, ref_dataset)
1271
1272
        elif isinstance(data, list) and len(data) > 0 and all(isinstance(x, np.ndarray) for x in data):
            self.__init_from_list_np2d(data, params_str, ref_dataset)
1273
        elif isinstance(data, dt_DataTable):
1274
            self.__init_from_np2d(data.to_numpy(), params_str, ref_dataset)
wxchan's avatar
wxchan committed
1275
1276
1277
1278
        else:
            try:
                csr = scipy.sparse.csr_matrix(data)
                self.__init_from_csr(csr, params_str, ref_dataset)
1279
            except BaseException:
wxchan's avatar
wxchan committed
1280
                raise TypeError('Cannot initialize Dataset from {}'.format(type(data).__name__))
wxchan's avatar
wxchan committed
1281
1282
1283
        if label is not None:
            self.set_label(label)
        if self.get_label() is None:
1284
            raise ValueError("Label should not be None")
wxchan's avatar
wxchan committed
1285
1286
1287
1288
        if weight is not None:
            self.set_weight(weight)
        if group is not None:
            self.set_group(group)
1289
1290
        if isinstance(predictor, _InnerPredictor):
            if self._predictor is None and init_score is not None:
1291
                _log_warning("The init_score will be overridden by the prediction of init_model.")
Guolin Ke's avatar
Guolin Ke committed
1292
            self._set_init_score_by_predictor(predictor, data)
1293
1294
        elif init_score is not None:
            self.set_init_score(init_score)
Guolin Ke's avatar
Guolin Ke committed
1295
1296
        elif predictor is not None:
            raise TypeError('Wrong predictor type {}'.format(type(predictor).__name__))
Guolin Ke's avatar
Guolin Ke committed
1297
        # set feature names
Nikita Titov's avatar
Nikita Titov committed
1298
        return self.set_feature_name(feature_name)
wxchan's avatar
wxchan committed
1299
1300

    def __init_from_np2d(self, mat, params_str, ref_dataset):
1301
        """Initialize data from a 2-D numpy matrix."""
wxchan's avatar
wxchan committed
1302
1303
1304
1305
1306
1307
        if len(mat.shape) != 2:
            raise ValueError('Input numpy.ndarray must be 2 dimensional')

        self.handle = ctypes.c_void_p()
        if mat.dtype == np.float32 or mat.dtype == np.float64:
            data = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
1308
        else:  # change non-float data to float data, need to copy
wxchan's avatar
wxchan committed
1309
1310
            data = np.array(mat.reshape(mat.size), dtype=np.float32)

1311
        ptr_data, type_ptr_data, _ = c_float_array(data)
wxchan's avatar
wxchan committed
1312
1313
        _safe_call(_LIB.LGBM_DatasetCreateFromMat(
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1314
1315
1316
1317
            ctypes.c_int(type_ptr_data),
            ctypes.c_int(mat.shape[0]),
            ctypes.c_int(mat.shape[1]),
            ctypes.c_int(C_API_IS_ROW_MAJOR),
wxchan's avatar
wxchan committed
1318
1319
1320
            c_str(params_str),
            ref_dataset,
            ctypes.byref(self.handle)))
Nikita Titov's avatar
Nikita Titov committed
1321
        return self
wxchan's avatar
wxchan committed
1322

1323
    def __init_from_list_np2d(self, mats, params_str, ref_dataset):
1324
        """Initialize data from a list of 2-D numpy matrices."""
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
        ncol = mats[0].shape[1]
        nrow = np.zeros((len(mats),), np.int32)
        if mats[0].dtype == np.float64:
            ptr_data = (ctypes.POINTER(ctypes.c_double) * len(mats))()
        else:
            ptr_data = (ctypes.POINTER(ctypes.c_float) * len(mats))()

        holders = []
        type_ptr_data = None

        for i, mat in enumerate(mats):
            if len(mat.shape) != 2:
                raise ValueError('Input numpy.ndarray must be 2 dimensional')

            if mat.shape[1] != ncol:
                raise ValueError('Input arrays must have same number of columns')

            nrow[i] = mat.shape[0]

            if mat.dtype == np.float32 or mat.dtype == np.float64:
                mats[i] = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
1346
            else:  # change non-float data to float data, need to copy
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
                mats[i] = np.array(mat.reshape(mat.size), dtype=np.float32)

            chunk_ptr_data, chunk_type_ptr_data, holder = c_float_array(mats[i])
            if type_ptr_data is not None and chunk_type_ptr_data != type_ptr_data:
                raise ValueError('Input chunks must have same type')
            ptr_data[i] = chunk_ptr_data
            type_ptr_data = chunk_type_ptr_data
            holders.append(holder)

        self.handle = ctypes.c_void_p()
        _safe_call(_LIB.LGBM_DatasetCreateFromMats(
            ctypes.c_int(len(mats)),
            ctypes.cast(ptr_data, ctypes.POINTER(ctypes.POINTER(ctypes.c_double))),
            ctypes.c_int(type_ptr_data),
            nrow.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
            ctypes.c_int(ncol),
            ctypes.c_int(C_API_IS_ROW_MAJOR),
            c_str(params_str),
            ref_dataset,
            ctypes.byref(self.handle)))
Nikita Titov's avatar
Nikita Titov committed
1367
        return self
1368

wxchan's avatar
wxchan committed
1369
    def __init_from_csr(self, csr, params_str, ref_dataset):
1370
        """Initialize data from a CSR matrix."""
wxchan's avatar
wxchan committed
1371
        if len(csr.indices) != len(csr.data):
1372
            raise ValueError('Length mismatch: {} vs {}'.format(len(csr.indices), len(csr.data)))
wxchan's avatar
wxchan committed
1373
1374
        self.handle = ctypes.c_void_p()

1375
1376
        ptr_indptr, type_ptr_indptr, __ = c_int_array(csr.indptr)
        ptr_data, type_ptr_data, _ = c_float_array(csr.data)
wxchan's avatar
wxchan committed
1377

1378
        assert csr.shape[1] <= MAX_INT32
1379
        csr_indices = csr.indices.astype(np.int32, copy=False)
1380

wxchan's avatar
wxchan committed
1381
1382
        _safe_call(_LIB.LGBM_DatasetCreateFromCSR(
            ptr_indptr,
Guolin Ke's avatar
Guolin Ke committed
1383
            ctypes.c_int(type_ptr_indptr),
1384
            csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
wxchan's avatar
wxchan committed
1385
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1386
1387
1388
1389
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csr.indptr)),
            ctypes.c_int64(len(csr.data)),
            ctypes.c_int64(csr.shape[1]),
wxchan's avatar
wxchan committed
1390
1391
1392
            c_str(params_str),
            ref_dataset,
            ctypes.byref(self.handle)))
Nikita Titov's avatar
Nikita Titov committed
1393
        return self
wxchan's avatar
wxchan committed
1394

Guolin Ke's avatar
Guolin Ke committed
1395
    def __init_from_csc(self, csc, params_str, ref_dataset):
1396
        """Initialize data from a CSC matrix."""
Guolin Ke's avatar
Guolin Ke committed
1397
1398
1399
1400
        if len(csc.indices) != len(csc.data):
            raise ValueError('Length mismatch: {} vs {}'.format(len(csc.indices), len(csc.data)))
        self.handle = ctypes.c_void_p()

1401
1402
        ptr_indptr, type_ptr_indptr, __ = c_int_array(csc.indptr)
        ptr_data, type_ptr_data, _ = c_float_array(csc.data)
Guolin Ke's avatar
Guolin Ke committed
1403

1404
        assert csc.shape[0] <= MAX_INT32
1405
        csc_indices = csc.indices.astype(np.int32, copy=False)
1406

Guolin Ke's avatar
Guolin Ke committed
1407
1408
        _safe_call(_LIB.LGBM_DatasetCreateFromCSC(
            ptr_indptr,
Guolin Ke's avatar
Guolin Ke committed
1409
            ctypes.c_int(type_ptr_indptr),
1410
            csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
Guolin Ke's avatar
Guolin Ke committed
1411
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1412
1413
1414
1415
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csc.indptr)),
            ctypes.c_int64(len(csc.data)),
            ctypes.c_int64(csc.shape[0]),
Guolin Ke's avatar
Guolin Ke committed
1416
1417
1418
            c_str(params_str),
            ref_dataset,
            ctypes.byref(self.handle)))
Nikita Titov's avatar
Nikita Titov committed
1419
        return self
Guolin Ke's avatar
Guolin Ke committed
1420

wxchan's avatar
wxchan committed
1421
    def construct(self):
1422
1423
1424
1425
1426
        """Lazy init.

        Returns
        -------
        self : Dataset
Nikita Titov's avatar
Nikita Titov committed
1427
            Constructed Dataset object.
1428
        """
1429
        if self.handle is None:
wxchan's avatar
wxchan committed
1430
            if self.reference is not None:
1431
1432
                reference_params = self.reference.get_params()
                if self.get_params() != reference_params:
1433
                    _log_warning('Overriding the parameters from Reference Dataset.')
1434
                    self._update_params(reference_params)
wxchan's avatar
wxchan committed
1435
                if self.used_indices is None:
1436
                    # create valid
1437
                    self._lazy_init(self.data, label=self.label, reference=self.reference,
1438
1439
                                    weight=self.weight, group=self.group,
                                    init_score=self.init_score, predictor=self._predictor,
1440
                                    silent=self.silent, feature_name=self.feature_name, params=self.params)
wxchan's avatar
wxchan committed
1441
                else:
1442
                    # construct subset
wxchan's avatar
wxchan committed
1443
                    used_indices = list_to_1d_numpy(self.used_indices, np.int32, name='used_indices')
1444
                    assert used_indices.flags.c_contiguous
Guolin Ke's avatar
Guolin Ke committed
1445
                    if self.reference.group is not None:
1446
                        group_info = np.array(self.reference.group).astype(np.int32, copy=False)
1447
                        _, self.group = np.unique(np.repeat(range(len(group_info)), repeats=group_info)[self.used_indices],
1448
                                                  return_counts=True)
1449
                    self.handle = ctypes.c_void_p()
wxchan's avatar
wxchan committed
1450
1451
                    params_str = param_dict_to_str(self.params)
                    _safe_call(_LIB.LGBM_DatasetGetSubset(
1452
                        self.reference.construct().handle,
wxchan's avatar
wxchan committed
1453
                        used_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
Guolin Ke's avatar
Guolin Ke committed
1454
                        ctypes.c_int(used_indices.shape[0]),
wxchan's avatar
wxchan committed
1455
1456
                        c_str(params_str),
                        ctypes.byref(self.handle)))
Guolin Ke's avatar
Guolin Ke committed
1457
1458
                    if not self.free_raw_data:
                        self.get_data()
Guolin Ke's avatar
Guolin Ke committed
1459
1460
                    if self.group is not None:
                        self.set_group(self.group)
wxchan's avatar
wxchan committed
1461
1462
                    if self.get_label() is None:
                        raise ValueError("Label should not be None.")
Guolin Ke's avatar
Guolin Ke committed
1463
1464
1465
                    if isinstance(self._predictor, _InnerPredictor) and self._predictor is not self.reference._predictor:
                        self.get_data()
                        self._set_init_score_by_predictor(self._predictor, self.data, used_indices)
wxchan's avatar
wxchan committed
1466
            else:
1467
                # create train
1468
                self._lazy_init(self.data, label=self.label,
1469
1470
1471
                                weight=self.weight, group=self.group,
                                init_score=self.init_score, predictor=self._predictor,
                                silent=self.silent, feature_name=self.feature_name,
1472
                                categorical_feature=self.categorical_feature, params=self.params)
wxchan's avatar
wxchan committed
1473
1474
1475
            if self.free_raw_data:
                self.data = None
        return self
wxchan's avatar
wxchan committed
1476

wxchan's avatar
wxchan committed
1477
    def create_valid(self, data, label=None, weight=None, group=None,
1478
                     init_score=None, silent=False, params=None):
1479
        """Create validation data align with current Dataset.
wxchan's avatar
wxchan committed
1480
1481
1482

        Parameters
        ----------
1483
        data : string, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse or list of numpy arrays
wxchan's avatar
wxchan committed
1484
            Data source of Dataset.
1485
            If string, it represents the path to txt file.
1486
        label : list, numpy 1-D array, pandas Series / one-column DataFrame or None, optional (default=None)
1487
1488
            Label of the data.
        weight : list, numpy 1-D array, pandas Series or None, optional (default=None)
wxchan's avatar
wxchan committed
1489
            Weight for each instance.
1490
        group : list, numpy 1-D array, pandas Series or None, optional (default=None)
1491
1492
1493
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
1494
1495
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
1496
        init_score : list, numpy 1-D array, pandas Series or None, optional (default=None)
1497
            Init score for Dataset.
1498
1499
        silent : bool, optional (default=False)
            Whether to print messages during construction.
Nikita Titov's avatar
Nikita Titov committed
1500
        params : dict or None, optional (default=None)
1501
            Other parameters for validation Dataset.
1502
1503
1504

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
1505
1506
        valid : Dataset
            Validation Dataset with reference to self.
wxchan's avatar
wxchan committed
1507
        """
1508
        ret = Dataset(data, label=label, reference=self,
1509
1510
                      weight=weight, group=group, init_score=init_score,
                      silent=silent, params=params, free_raw_data=self.free_raw_data)
wxchan's avatar
wxchan committed
1511
        ret._predictor = self._predictor
1512
        ret.pandas_categorical = self.pandas_categorical
wxchan's avatar
wxchan committed
1513
        return ret
wxchan's avatar
wxchan committed
1514

wxchan's avatar
wxchan committed
1515
    def subset(self, used_indices, params=None):
1516
        """Get subset of current Dataset.
wxchan's avatar
wxchan committed
1517
1518
1519
1520

        Parameters
        ----------
        used_indices : list of int
1521
            Indices used to create the subset.
Nikita Titov's avatar
Nikita Titov committed
1522
        params : dict or None, optional (default=None)
1523
            These parameters will be passed to Dataset constructor.
1524
1525
1526
1527
1528

        Returns
        -------
        subset : Dataset
            Subset of the current Dataset.
wxchan's avatar
wxchan committed
1529
        """
wxchan's avatar
wxchan committed
1530
1531
        if params is None:
            params = self.params
wxchan's avatar
wxchan committed
1532
        ret = Dataset(None, reference=self, feature_name=self.feature_name,
1533
1534
                      categorical_feature=self.categorical_feature, params=params,
                      free_raw_data=self.free_raw_data)
wxchan's avatar
wxchan committed
1535
        ret._predictor = self._predictor
1536
        ret.pandas_categorical = self.pandas_categorical
1537
        ret.used_indices = sorted(used_indices)
wxchan's avatar
wxchan committed
1538
1539
1540
        return ret

    def save_binary(self, filename):
1541
        """Save Dataset to a binary file.
wxchan's avatar
wxchan committed
1542

1543
1544
1545
1546
1547
        .. note::

            Please note that `init_score` is not saved in binary file.
            If you need it, please set it again after loading Dataset.

wxchan's avatar
wxchan committed
1548
1549
1550
1551
        Parameters
        ----------
        filename : string
            Name of the output file.
Nikita Titov's avatar
Nikita Titov committed
1552
1553
1554
1555
1556

        Returns
        -------
        self : Dataset
            Returns self.
wxchan's avatar
wxchan committed
1557
1558
1559
1560
        """
        _safe_call(_LIB.LGBM_DatasetSaveBinary(
            self.construct().handle,
            c_str(filename)))
Nikita Titov's avatar
Nikita Titov committed
1561
        return self
wxchan's avatar
wxchan committed
1562
1563

    def _update_params(self, params):
1564
1565
        if not params:
            return self
1566
        params = deepcopy(params)
1567
1568
1569
1570
1571

        def update():
            if not self.params:
                self.params = params
            else:
1572
                self.params_back_up = deepcopy(self.params)
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
                self.params.update(params)

        if self.handle is None:
            update()
        elif params is not None:
            ret = _LIB.LGBM_DatasetUpdateParamChecking(
                c_str(param_dict_to_str(self.params)),
                c_str(param_dict_to_str(params)))
            if ret != 0:
                # could be updated if data is not freed
                if self.data is not None:
                    update()
                    self._free_handle()
                else:
1587
                    raise LightGBMError(_LIB.LGBM_GetLastError().decode('utf-8'))
Nikita Titov's avatar
Nikita Titov committed
1588
        return self
wxchan's avatar
wxchan committed
1589

1590
    def _reverse_update_params(self):
1591
        if self.handle is None:
1592
            self.params = deepcopy(self.params_back_up)
1593
            self.params_back_up = None
Nikita Titov's avatar
Nikita Titov committed
1594
        return self
1595

wxchan's avatar
wxchan committed
1596
    def set_field(self, field_name, data):
wxchan's avatar
wxchan committed
1597
        """Set property into the Dataset.
wxchan's avatar
wxchan committed
1598
1599
1600

        Parameters
        ----------
Nikita Titov's avatar
Nikita Titov committed
1601
        field_name : string
1602
            The field name of the information.
1603
        data : list, numpy 1-D array, pandas Series or None
1604
            The array of data to be set.
Nikita Titov's avatar
Nikita Titov committed
1605
1606
1607
1608
1609

        Returns
        -------
        self : Dataset
            Dataset with set property.
wxchan's avatar
wxchan committed
1610
        """
1611
1612
        if self.handle is None:
            raise Exception("Cannot set %s before construct dataset" % field_name)
wxchan's avatar
wxchan committed
1613
        if data is None:
1614
            # set to None
wxchan's avatar
wxchan committed
1615
1616
1617
1618
            _safe_call(_LIB.LGBM_DatasetSetField(
                self.handle,
                c_str(field_name),
                None,
Guolin Ke's avatar
Guolin Ke committed
1619
1620
                ctypes.c_int(0),
                ctypes.c_int(FIELD_TYPE_MAPPER[field_name])))
Nikita Titov's avatar
Nikita Titov committed
1621
            return self
Guolin Ke's avatar
Guolin Ke committed
1622
1623
1624
1625
1626
        dtype = np.float32
        if field_name == 'group':
            dtype = np.int32
        elif field_name == 'init_score':
            dtype = np.float64
1627
        data = list_to_1d_numpy(data, dtype, name=field_name)
1628
1629
        if data.dtype == np.float32 or data.dtype == np.float64:
            ptr_data, type_data, _ = c_float_array(data)
wxchan's avatar
wxchan committed
1630
        elif data.dtype == np.int32:
1631
            ptr_data, type_data, _ = c_int_array(data)
wxchan's avatar
wxchan committed
1632
        else:
Nikita Titov's avatar
Nikita Titov committed
1633
            raise TypeError("Expected np.float32/64 or np.int32, met type({})".format(data.dtype))
wxchan's avatar
wxchan committed
1634
        if type_data != FIELD_TYPE_MAPPER[field_name]:
1635
            raise TypeError("Input type error for set_field")
wxchan's avatar
wxchan committed
1636
1637
1638
1639
        _safe_call(_LIB.LGBM_DatasetSetField(
            self.handle,
            c_str(field_name),
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1640
1641
            ctypes.c_int(len(data)),
            ctypes.c_int(type_data)))
1642
        self.version += 1
Nikita Titov's avatar
Nikita Titov committed
1643
        return self
wxchan's avatar
wxchan committed
1644

wxchan's avatar
wxchan committed
1645
1646
    def get_field(self, field_name):
        """Get property from the Dataset.
wxchan's avatar
wxchan committed
1647
1648
1649

        Parameters
        ----------
Nikita Titov's avatar
Nikita Titov committed
1650
        field_name : string
1651
            The field name of the information.
wxchan's avatar
wxchan committed
1652
1653
1654

        Returns
        -------
1655
1656
        info : numpy array
            A numpy array with information from the Dataset.
Guolin Ke's avatar
Guolin Ke committed
1657
        """
1658
        if self.handle is None:
1659
            raise Exception("Cannot get %s before construct Dataset" % field_name)
Guolin Ke's avatar
Guolin Ke committed
1660
1661
        tmp_out_len = ctypes.c_int()
        out_type = ctypes.c_int()
wxchan's avatar
wxchan committed
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
        ret = ctypes.POINTER(ctypes.c_void_p)()
        _safe_call(_LIB.LGBM_DatasetGetField(
            self.handle,
            c_str(field_name),
            ctypes.byref(tmp_out_len),
            ctypes.byref(ret),
            ctypes.byref(out_type)))
        if out_type.value != FIELD_TYPE_MAPPER[field_name]:
            raise TypeError("Return type error for get_field")
        if tmp_out_len.value == 0:
            return None
        if out_type.value == C_API_DTYPE_INT32:
            return cint32_array_to_numpy(ctypes.cast(ret, ctypes.POINTER(ctypes.c_int32)), tmp_out_len.value)
        elif out_type.value == C_API_DTYPE_FLOAT32:
            return cfloat32_array_to_numpy(ctypes.cast(ret, ctypes.POINTER(ctypes.c_float)), tmp_out_len.value)
Guolin Ke's avatar
Guolin Ke committed
1677
1678
        elif out_type.value == C_API_DTYPE_FLOAT64:
            return cfloat64_array_to_numpy(ctypes.cast(ret, ctypes.POINTER(ctypes.c_double)), tmp_out_len.value)
1679
        else:
wxchan's avatar
wxchan committed
1680
            raise TypeError("Unknown type")
Guolin Ke's avatar
Guolin Ke committed
1681

1682
    def set_categorical_feature(self, categorical_feature):
1683
        """Set categorical features.
1684
1685
1686

        Parameters
        ----------
1687
1688
        categorical_feature : list of int or strings
            Names or indices of categorical features.
Nikita Titov's avatar
Nikita Titov committed
1689
1690
1691
1692
1693

        Returns
        -------
        self : Dataset
            Dataset with set categorical features.
1694
1695
        """
        if self.categorical_feature == categorical_feature:
Nikita Titov's avatar
Nikita Titov committed
1696
            return self
1697
        if self.data is not None:
1698
1699
            if self.categorical_feature is None:
                self.categorical_feature = categorical_feature
Nikita Titov's avatar
Nikita Titov committed
1700
                return self._free_handle()
1701
            elif categorical_feature == 'auto':
1702
                _log_warning('Using categorical_feature in Dataset.')
Nikita Titov's avatar
Nikita Titov committed
1703
                return self
1704
            else:
1705
1706
                _log_warning('categorical_feature in Dataset is overridden.\n'
                             'New categorical_feature is {}'.format(sorted(list(categorical_feature))))
1707
                self.categorical_feature = categorical_feature
Nikita Titov's avatar
Nikita Titov committed
1708
                return self._free_handle()
1709
        else:
1710
1711
            raise LightGBMError("Cannot set categorical feature after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
1712

Guolin Ke's avatar
Guolin Ke committed
1713
    def _set_predictor(self, predictor):
1714
1715
1716
1717
        """Set predictor for continued training.

        It is not recommended for user to call this function.
        Please use init_model argument in engine.train() or engine.cv() instead.
Guolin Ke's avatar
Guolin Ke committed
1718
        """
1719
        if predictor is self._predictor and (predictor is None or predictor.current_iteration() == self._predictor.current_iteration()):
Nikita Titov's avatar
Nikita Titov committed
1720
            return self
1721
        if self.handle is None:
Guolin Ke's avatar
Guolin Ke committed
1722
            self._predictor = predictor
1723
1724
1725
1726
1727
1728
        elif self.data is not None:
            self._predictor = predictor
            self._set_init_score_by_predictor(self._predictor, self.data)
        elif self.used_indices is not None and self.reference is not None and self.reference.data is not None:
            self._predictor = predictor
            self._set_init_score_by_predictor(self._predictor, self.reference.data, self.used_indices)
Guolin Ke's avatar
Guolin Ke committed
1729
        else:
1730
1731
            raise LightGBMError("Cannot set predictor after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
1732
        return self
Guolin Ke's avatar
Guolin Ke committed
1733
1734

    def set_reference(self, reference):
1735
        """Set reference Dataset.
Guolin Ke's avatar
Guolin Ke committed
1736
1737
1738
1739

        Parameters
        ----------
        reference : Dataset
1740
            Reference that is used as a template to construct the current Dataset.
Nikita Titov's avatar
Nikita Titov committed
1741
1742
1743
1744
1745

        Returns
        -------
        self : Dataset
            Dataset with set reference.
Guolin Ke's avatar
Guolin Ke committed
1746
        """
1747
1748
1749
        self.set_categorical_feature(reference.categorical_feature) \
            .set_feature_name(reference.feature_name) \
            ._set_predictor(reference._predictor)
1750
1751
        # we're done if self and reference share a common upstrem reference
        if self.get_ref_chain().intersection(reference.get_ref_chain()):
Nikita Titov's avatar
Nikita Titov committed
1752
            return self
Guolin Ke's avatar
Guolin Ke committed
1753
1754
        if self.data is not None:
            self.reference = reference
Nikita Titov's avatar
Nikita Titov committed
1755
            return self._free_handle()
Guolin Ke's avatar
Guolin Ke committed
1756
        else:
1757
1758
            raise LightGBMError("Cannot set reference after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
Guolin Ke's avatar
Guolin Ke committed
1759
1760

    def set_feature_name(self, feature_name):
1761
        """Set feature name.
Guolin Ke's avatar
Guolin Ke committed
1762
1763
1764

        Parameters
        ----------
1765
1766
        feature_name : list of strings
            Feature names.
Nikita Titov's avatar
Nikita Titov committed
1767
1768
1769
1770
1771

        Returns
        -------
        self : Dataset
            Dataset with set feature name.
Guolin Ke's avatar
Guolin Ke committed
1772
        """
1773
1774
        if feature_name != 'auto':
            self.feature_name = feature_name
1775
        if self.handle is not None and feature_name is not None and feature_name != 'auto':
wxchan's avatar
wxchan committed
1776
            if len(feature_name) != self.num_feature():
1777
1778
                raise ValueError("Length of feature_name({}) and num_feature({}) don't match"
                                 .format(len(feature_name), self.num_feature()))
1779
            c_feature_name = [c_str(name) for name in feature_name]
wxchan's avatar
wxchan committed
1780
1781
1782
            _safe_call(_LIB.LGBM_DatasetSetFeatureNames(
                self.handle,
                c_array(ctypes.c_char_p, c_feature_name),
Guolin Ke's avatar
Guolin Ke committed
1783
                ctypes.c_int(len(feature_name))))
Nikita Titov's avatar
Nikita Titov committed
1784
        return self
Guolin Ke's avatar
Guolin Ke committed
1785
1786

    def set_label(self, label):
1787
        """Set label of Dataset.
Guolin Ke's avatar
Guolin Ke committed
1788
1789
1790

        Parameters
        ----------
1791
        label : list, numpy 1-D array, pandas Series / one-column DataFrame or None
1792
            The label information to be set into Dataset.
Nikita Titov's avatar
Nikita Titov committed
1793
1794
1795
1796
1797

        Returns
        -------
        self : Dataset
            Dataset with set label.
Guolin Ke's avatar
Guolin Ke committed
1798
1799
        """
        self.label = label
1800
        if self.handle is not None:
1801
            label = list_to_1d_numpy(_label_from_pandas(label), name='label')
wxchan's avatar
wxchan committed
1802
            self.set_field('label', label)
1803
            self.label = self.get_field('label')  # original values can be modified at cpp side
Nikita Titov's avatar
Nikita Titov committed
1804
        return self
Guolin Ke's avatar
Guolin Ke committed
1805
1806

    def set_weight(self, weight):
1807
        """Set weight of each instance.
Guolin Ke's avatar
Guolin Ke committed
1808
1809
1810

        Parameters
        ----------
1811
        weight : list, numpy 1-D array, pandas Series or None
1812
            Weight to be set for each data point.
Nikita Titov's avatar
Nikita Titov committed
1813
1814
1815
1816
1817

        Returns
        -------
        self : Dataset
            Dataset with set weight.
Guolin Ke's avatar
Guolin Ke committed
1818
        """
1819
1820
        if weight is not None and np.all(weight == 1):
            weight = None
Guolin Ke's avatar
Guolin Ke committed
1821
        self.weight = weight
1822
        if self.handle is not None and weight is not None:
wxchan's avatar
wxchan committed
1823
1824
            weight = list_to_1d_numpy(weight, name='weight')
            self.set_field('weight', weight)
1825
            self.weight = self.get_field('weight')  # original values can be modified at cpp side
Nikita Titov's avatar
Nikita Titov committed
1826
        return self
Guolin Ke's avatar
Guolin Ke committed
1827
1828

    def set_init_score(self, init_score):
1829
        """Set init score of Booster to start from.
Guolin Ke's avatar
Guolin Ke committed
1830
1831
1832

        Parameters
        ----------
1833
        init_score : list, numpy 1-D array, pandas Series or None
1834
            Init score for Booster.
Nikita Titov's avatar
Nikita Titov committed
1835
1836
1837
1838
1839

        Returns
        -------
        self : Dataset
            Dataset with set init score.
Guolin Ke's avatar
Guolin Ke committed
1840
1841
        """
        self.init_score = init_score
1842
        if self.handle is not None and init_score is not None:
Guolin Ke's avatar
Guolin Ke committed
1843
            init_score = list_to_1d_numpy(init_score, np.float64, name='init_score')
wxchan's avatar
wxchan committed
1844
            self.set_field('init_score', init_score)
1845
            self.init_score = self.get_field('init_score')  # original values can be modified at cpp side
Nikita Titov's avatar
Nikita Titov committed
1846
        return self
Guolin Ke's avatar
Guolin Ke committed
1847
1848

    def set_group(self, group):
1849
        """Set group size of Dataset (used for ranking).
Guolin Ke's avatar
Guolin Ke committed
1850
1851
1852

        Parameters
        ----------
1853
        group : list, numpy 1-D array, pandas Series or None
1854
1855
1856
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
1857
1858
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
Nikita Titov's avatar
Nikita Titov committed
1859
1860
1861
1862
1863

        Returns
        -------
        self : Dataset
            Dataset with set group.
Guolin Ke's avatar
Guolin Ke committed
1864
1865
        """
        self.group = group
1866
        if self.handle is not None and group is not None:
wxchan's avatar
wxchan committed
1867
1868
            group = list_to_1d_numpy(group, np.int32, name='group')
            self.set_field('group', group)
Nikita Titov's avatar
Nikita Titov committed
1869
        return self
Guolin Ke's avatar
Guolin Ke committed
1870

1871
1872
1873
1874
1875
1876
1877
1878
1879
1880
1881
1882
1883
1884
    def get_feature_name(self):
        """Get the names of columns (features) in the Dataset.

        Returns
        -------
        feature_names : list
            The names of columns (features) in the Dataset.
        """
        if self.handle is None:
            raise LightGBMError("Cannot get feature_name before construct dataset")
        num_feature = self.num_feature()
        tmp_out_len = ctypes.c_int(0)
        reserved_string_buffer_size = 255
        required_string_buffer_size = ctypes.c_size_t(0)
1885
        string_buffers = [ctypes.create_string_buffer(reserved_string_buffer_size) for i in range(num_feature)]
1886
1887
1888
        ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
        _safe_call(_LIB.LGBM_DatasetGetFeatureNames(
            self.handle,
1889
            ctypes.c_int(num_feature),
1890
            ctypes.byref(tmp_out_len),
1891
            ctypes.c_size_t(reserved_string_buffer_size),
1892
1893
1894
1895
1896
1897
1898
1899
1900
            ctypes.byref(required_string_buffer_size),
            ptr_string_buffers))
        if num_feature != tmp_out_len.value:
            raise ValueError("Length of feature names doesn't equal with num_feature")
        if reserved_string_buffer_size < required_string_buffer_size.value:
            raise BufferError(
                "Allocated feature name buffer size ({}) was inferior to the needed size ({})."
                .format(reserved_string_buffer_size, required_string_buffer_size.value)
            )
1901
        return [string_buffers[i].value.decode('utf-8') for i in range(num_feature)]
1902

Guolin Ke's avatar
Guolin Ke committed
1903
    def get_label(self):
1904
        """Get the label of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
1905
1906
1907

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
1908
        label : numpy array or None
1909
            The label information from the Dataset.
Guolin Ke's avatar
Guolin Ke committed
1910
        """
1911
        if self.label is None:
wxchan's avatar
wxchan committed
1912
            self.label = self.get_field('label')
Guolin Ke's avatar
Guolin Ke committed
1913
1914
1915
        return self.label

    def get_weight(self):
1916
        """Get the weight of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
1917
1918
1919

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
1920
        weight : numpy array or None
1921
            Weight for each data point from the Dataset.
Guolin Ke's avatar
Guolin Ke committed
1922
        """
1923
        if self.weight is None:
wxchan's avatar
wxchan committed
1924
            self.weight = self.get_field('weight')
Guolin Ke's avatar
Guolin Ke committed
1925
1926
1927
        return self.weight

    def get_init_score(self):
1928
        """Get the initial score of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
1929
1930
1931

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
1932
        init_score : numpy array or None
1933
            Init score of Booster.
Guolin Ke's avatar
Guolin Ke committed
1934
        """
1935
        if self.init_score is None:
wxchan's avatar
wxchan committed
1936
            self.init_score = self.get_field('init_score')
Guolin Ke's avatar
Guolin Ke committed
1937
1938
        return self.init_score

1939
1940
1941
1942
1943
    def get_data(self):
        """Get the raw data of the Dataset.

        Returns
        -------
1944
        data : string, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, list of numpy arrays or None
1945
1946
1947
1948
            Raw data used in the Dataset construction.
        """
        if self.handle is None:
            raise Exception("Cannot get data before construct Dataset")
Guolin Ke's avatar
Guolin Ke committed
1949
1950
1951
1952
1953
        if self.need_slice and self.used_indices is not None and self.reference is not None:
            self.data = self.reference.data
            if self.data is not None:
                if isinstance(self.data, np.ndarray) or scipy.sparse.issparse(self.data):
                    self.data = self.data[self.used_indices, :]
1954
                elif isinstance(self.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
1955
                    self.data = self.data.iloc[self.used_indices].copy()
1956
                elif isinstance(self.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
1957
1958
                    self.data = self.data[self.used_indices, :]
                else:
1959
1960
                    _log_warning("Cannot subset {} type of raw data.\n"
                                 "Returning original raw data".format(type(self.data).__name__))
1961
            self.need_slice = False
Guolin Ke's avatar
Guolin Ke committed
1962
1963
1964
        if self.data is None:
            raise LightGBMError("Cannot call `get_data` after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
1965
1966
        return self.data

Guolin Ke's avatar
Guolin Ke committed
1967
    def get_group(self):
1968
        """Get the group of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
1969
1970
1971

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
1972
        group : numpy array or None
1973
1974
1975
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
1976
1977
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
Guolin Ke's avatar
Guolin Ke committed
1978
        """
1979
        if self.group is None:
wxchan's avatar
wxchan committed
1980
            self.group = self.get_field('group')
Guolin Ke's avatar
Guolin Ke committed
1981
1982
            if self.group is not None:
                # group data from LightGBM is boundaries data, need to convert to group size
Nikita Titov's avatar
Nikita Titov committed
1983
                self.group = np.diff(self.group)
Guolin Ke's avatar
Guolin Ke committed
1984
1985
1986
        return self.group

    def num_data(self):
1987
        """Get the number of rows in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
1988
1989
1990

        Returns
        -------
1991
1992
        number_of_rows : int
            The number of rows in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
1993
        """
1994
        if self.handle is not None:
Guolin Ke's avatar
Guolin Ke committed
1995
            ret = ctypes.c_int()
wxchan's avatar
wxchan committed
1996
1997
1998
            _safe_call(_LIB.LGBM_DatasetGetNumData(self.handle,
                                                   ctypes.byref(ret)))
            return ret.value
Guolin Ke's avatar
Guolin Ke committed
1999
        else:
2000
            raise LightGBMError("Cannot get num_data before construct dataset")
Guolin Ke's avatar
Guolin Ke committed
2001
2002

    def num_feature(self):
2003
        """Get the number of columns (features) in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2004
2005
2006

        Returns
        -------
2007
2008
        number_of_columns : int
            The number of columns (features) in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2009
        """
2010
        if self.handle is not None:
Guolin Ke's avatar
Guolin Ke committed
2011
            ret = ctypes.c_int()
wxchan's avatar
wxchan committed
2012
2013
2014
            _safe_call(_LIB.LGBM_DatasetGetNumFeature(self.handle,
                                                      ctypes.byref(ret)))
            return ret.value
Guolin Ke's avatar
Guolin Ke committed
2015
        else:
2016
            raise LightGBMError("Cannot get num_feature before construct dataset")
Guolin Ke's avatar
Guolin Ke committed
2017

2018
    def get_ref_chain(self, ref_limit=100):
2019
2020
2021
2022
2023
        """Get a chain of Dataset objects.

        Starts with r, then goes to r.reference (if exists),
        then to r.reference.reference, etc.
        until we hit ``ref_limit`` or a reference loop.
2024
2025
2026
2027
2028

        Parameters
        ----------
        ref_limit : int, optional (default=100)
            The limit number of references.
2029
2030
2031

        Returns
        -------
2032
2033
2034
        ref_chain : set of Dataset
            Chain of references of the Datasets.
        """
2035
        head = self
2036
        ref_chain = set()
2037
2038
        while len(ref_chain) < ref_limit:
            if isinstance(head, Dataset):
2039
                ref_chain.add(head)
2040
2041
2042
2043
2044
2045
                if (head.reference is not None) and (head.reference not in ref_chain):
                    head = head.reference
                else:
                    break
            else:
                break
Nikita Titov's avatar
Nikita Titov committed
2046
        return ref_chain
2047

2048
2049
2050
2051
2052
2053
2054
2055
2056
2057
2058
2059
2060
2061
2062
2063
2064
2065
    def add_features_from(self, other):
        """Add features from other Dataset to the current Dataset.

        Both Datasets must be constructed before calling this method.

        Parameters
        ----------
        other : Dataset
            The Dataset to take features from.

        Returns
        -------
        self : Dataset
            Dataset with the new features added.
        """
        if self.handle is None or other.handle is None:
            raise ValueError('Both source and target Datasets must be constructed before adding features')
        _safe_call(_LIB.LGBM_DatasetAddFeaturesFrom(self.handle, other.handle))
Guolin Ke's avatar
Guolin Ke committed
2066
2067
2068
2069
2070
2071
2072
2073
2074
2075
        was_none = self.data is None
        old_self_data_type = type(self.data).__name__
        if other.data is None:
            self.data = None
        elif self.data is not None:
            if isinstance(self.data, np.ndarray):
                if isinstance(other.data, np.ndarray):
                    self.data = np.hstack((self.data, other.data))
                elif scipy.sparse.issparse(other.data):
                    self.data = np.hstack((self.data, other.data.toarray()))
2076
                elif isinstance(other.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
2077
                    self.data = np.hstack((self.data, other.data.values))
2078
                elif isinstance(other.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
2079
2080
2081
2082
2083
2084
2085
                    self.data = np.hstack((self.data, other.data.to_numpy()))
                else:
                    self.data = None
            elif scipy.sparse.issparse(self.data):
                sparse_format = self.data.getformat()
                if isinstance(other.data, np.ndarray) or scipy.sparse.issparse(other.data):
                    self.data = scipy.sparse.hstack((self.data, other.data), format=sparse_format)
2086
                elif isinstance(other.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
2087
                    self.data = scipy.sparse.hstack((self.data, other.data.values), format=sparse_format)
2088
                elif isinstance(other.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
2089
2090
2091
                    self.data = scipy.sparse.hstack((self.data, other.data.to_numpy()), format=sparse_format)
                else:
                    self.data = None
2092
            elif isinstance(self.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
2093
2094
2095
2096
                if not PANDAS_INSTALLED:
                    raise LightGBMError("Cannot add features to DataFrame type of raw data "
                                        "without pandas installed")
                if isinstance(other.data, np.ndarray):
2097
                    self.data = concat((self.data, pd_DataFrame(other.data)),
Guolin Ke's avatar
Guolin Ke committed
2098
2099
                                       axis=1, ignore_index=True)
                elif scipy.sparse.issparse(other.data):
2100
                    self.data = concat((self.data, pd_DataFrame(other.data.toarray())),
Guolin Ke's avatar
Guolin Ke committed
2101
                                       axis=1, ignore_index=True)
2102
                elif isinstance(other.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
2103
2104
                    self.data = concat((self.data, other.data),
                                       axis=1, ignore_index=True)
2105
2106
                elif isinstance(other.data, dt_DataTable):
                    self.data = concat((self.data, pd_DataFrame(other.data.to_numpy())),
Guolin Ke's avatar
Guolin Ke committed
2107
2108
2109
                                       axis=1, ignore_index=True)
                else:
                    self.data = None
2110
            elif isinstance(self.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
2111
                if isinstance(other.data, np.ndarray):
2112
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data)))
Guolin Ke's avatar
Guolin Ke committed
2113
                elif scipy.sparse.issparse(other.data):
2114
2115
2116
2117
2118
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.toarray())))
                elif isinstance(other.data, pd_DataFrame):
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.values)))
                elif isinstance(other.data, dt_DataTable):
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.to_numpy())))
Guolin Ke's avatar
Guolin Ke committed
2119
2120
2121
2122
2123
2124
2125
2126
2127
2128
                else:
                    self.data = None
            else:
                self.data = None
        if self.data is None:
            err_msg = ("Cannot add features from {} type of raw data to "
                       "{} type of raw data.\n").format(type(other.data).__name__,
                                                        old_self_data_type)
            err_msg += ("Set free_raw_data=False when construct Dataset to avoid this"
                        if was_none else "Freeing raw data")
2129
            _log_warning(err_msg)
Guolin Ke's avatar
Guolin Ke committed
2130
        self.feature_name = self.get_feature_name()
2131
2132
        _log_warning("Reseting categorical features.\n"
                     "You can set new categorical features via ``set_categorical_feature`` method")
Guolin Ke's avatar
Guolin Ke committed
2133
2134
        self.categorical_feature = "auto"
        self.pandas_categorical = None
2135
2136
        return self

2137
    def _dump_text(self, filename):
2138
2139
2140
2141
2142
2143
2144
2145
2146
2147
2148
2149
2150
2151
2152
2153
2154
2155
2156
        """Save Dataset to a text file.

        This format cannot be loaded back in by LightGBM, but is useful for debugging purposes.

        Parameters
        ----------
        filename : string
            Name of the output file.

        Returns
        -------
        self : Dataset
            Returns self.
        """
        _safe_call(_LIB.LGBM_DatasetDumpText(
            self.construct().handle,
            c_str(filename)))
        return self

wxchan's avatar
wxchan committed
2157

2158
class Booster:
2159
    """Booster in LightGBM."""
2160

2161
    def __init__(self, params=None, train_set=None, model_file=None, model_str=None, silent=False):
2162
        """Initialize the Booster.
wxchan's avatar
wxchan committed
2163
2164
2165

        Parameters
        ----------
Nikita Titov's avatar
Nikita Titov committed
2166
        params : dict or None, optional (default=None)
2167
2168
2169
2170
            Parameters for Booster.
        train_set : Dataset or None, optional (default=None)
            Training dataset.
        model_file : string or None, optional (default=None)
wxchan's avatar
wxchan committed
2171
            Path to the model file.
2172
2173
        model_str : string or None, optional (default=None)
            Model will be loaded from this string.
2174
2175
        silent : bool, optional (default=False)
            Whether to print messages during construction.
wxchan's avatar
wxchan committed
2176
        """
2177
        self.handle = None
2178
        self.network = False
wxchan's avatar
wxchan committed
2179
        self.__need_reload_eval_info = True
2180
        self._train_data_name = "training"
wxchan's avatar
wxchan committed
2181
        self.__attr = {}
2182
        self.__set_objective_to_none = False
wxchan's avatar
wxchan committed
2183
        self.best_iteration = -1
wxchan's avatar
wxchan committed
2184
        self.best_score = {}
2185
        params = {} if params is None else deepcopy(params)
2186
        # user can set verbose with params, it has higher priority
2187
        if not any(verbose_alias in params for verbose_alias in _ConfigAliases.get("verbosity")) and silent:
2188
            params["verbose"] = -1
wxchan's avatar
wxchan committed
2189
        if train_set is not None:
2190
            # Training task
wxchan's avatar
wxchan committed
2191
            if not isinstance(train_set, Dataset):
2192
2193
                raise TypeError('Training data should be Dataset instance, met {}'
                                .format(type(train_set).__name__))
2194
2195
2196
2197
2198
2199
2200
2201
2202
2203
2204
2205
2206
2207
2208
2209
2210
2211
2212
2213
2214
2215
2216
2217
2218
2219
2220
2221
2222
2223
2224
2225
2226
2227
            params = _choose_param_value(
                main_param_name="machines",
                params=params,
                default_value=None
            )
            # if "machines" is given, assume user wants to do distributed learning, and set up network
            if params["machines"] is None:
                params.pop("machines", None)
            else:
                machines = params["machines"]
                if isinstance(machines, str):
                    num_machines_from_machine_list = len(machines.split(','))
                elif isinstance(machines, (list, set)):
                    num_machines_from_machine_list = len(machines)
                    machines = ','.join(machines)
                else:
                    raise ValueError("Invalid machines in params.")

                params = _choose_param_value(
                    main_param_name="num_machines",
                    params=params,
                    default_value=num_machines_from_machine_list
                )
                params = _choose_param_value(
                    main_param_name="local_listen_port",
                    params=params,
                    default_value=12400
                )
                self.set_network(
                    machines=machines,
                    local_listen_port=params["local_listen_port"],
                    listen_time_out=params.get("time_out", 120),
                    num_machines=params["num_machines"]
                )
2228
            # construct booster object
2229
2230
2231
2232
            train_set.construct()
            # copy the parameters from train_set
            params.update(train_set.get_params())
            params_str = param_dict_to_str(params)
2233
            self.handle = ctypes.c_void_p()
wxchan's avatar
wxchan committed
2234
            _safe_call(_LIB.LGBM_BoosterCreate(
2235
                train_set.handle,
wxchan's avatar
wxchan committed
2236
2237
                c_str(params_str),
                ctypes.byref(self.handle)))
2238
            # save reference to data
wxchan's avatar
wxchan committed
2239
2240
2241
2242
            self.train_set = train_set
            self.valid_sets = []
            self.name_valid_sets = []
            self.__num_dataset = 1
Guolin Ke's avatar
Guolin Ke committed
2243
2244
            self.__init_predictor = train_set._predictor
            if self.__init_predictor is not None:
wxchan's avatar
wxchan committed
2245
2246
                _safe_call(_LIB.LGBM_BoosterMerge(
                    self.handle,
Guolin Ke's avatar
Guolin Ke committed
2247
                    self.__init_predictor.handle))
Guolin Ke's avatar
Guolin Ke committed
2248
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
2249
2250
2251
2252
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
                self.handle,
                ctypes.byref(out_num_class)))
            self.__num_class = out_num_class.value
2253
            # buffer for inner predict
wxchan's avatar
wxchan committed
2254
2255
2256
            self.__inner_predict_buffer = [None]
            self.__is_predicted_cur_iter = [False]
            self.__get_eval_info()
2257
            self.pandas_categorical = train_set.pandas_categorical
2258
            self.train_set_version = train_set.version
wxchan's avatar
wxchan committed
2259
        elif model_file is not None:
2260
            # Prediction task
Guolin Ke's avatar
Guolin Ke committed
2261
            out_num_iterations = ctypes.c_int(0)
2262
            self.handle = ctypes.c_void_p()
wxchan's avatar
wxchan committed
2263
2264
2265
2266
            _safe_call(_LIB.LGBM_BoosterCreateFromModelfile(
                c_str(model_file),
                ctypes.byref(out_num_iterations),
                ctypes.byref(self.handle)))
Guolin Ke's avatar
Guolin Ke committed
2267
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
2268
2269
2270
2271
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
                self.handle,
                ctypes.byref(out_num_class)))
            self.__num_class = out_num_class.value
2272
            self.pandas_categorical = _load_pandas_categorical(file_name=model_file)
2273
2274
        elif model_str is not None:
            self.model_from_string(model_str, not silent)
wxchan's avatar
wxchan committed
2275
        else:
2276
2277
            raise TypeError('Need at least one training dataset or model file or model string '
                            'to create Booster instance')
2278
        self.params = params
wxchan's avatar
wxchan committed
2279
2280

    def __del__(self):
2281
2282
2283
2284
2285
2286
2287
2288
2289
2290
        try:
            if self.network:
                self.free_network()
        except AttributeError:
            pass
        try:
            if self.handle is not None:
                _safe_call(_LIB.LGBM_BoosterFree(self.handle))
        except AttributeError:
            pass
wxchan's avatar
wxchan committed
2291

wxchan's avatar
wxchan committed
2292
2293
2294
2295
    def __copy__(self):
        return self.__deepcopy__(None)

    def __deepcopy__(self, _):
2296
        model_str = self.model_to_string(num_iteration=-1)
2297
        booster = Booster(model_str=model_str)
2298
        return booster
wxchan's avatar
wxchan committed
2299
2300
2301
2302
2303
2304
2305

    def __getstate__(self):
        this = self.__dict__.copy()
        handle = this['handle']
        this.pop('train_set', None)
        this.pop('valid_sets', None)
        if handle is not None:
2306
            this["handle"] = self.model_to_string(num_iteration=-1)
wxchan's avatar
wxchan committed
2307
2308
2309
        return this

    def __setstate__(self, state):
2310
2311
        model_str = state.get('handle', None)
        if model_str is not None:
wxchan's avatar
wxchan committed
2312
            handle = ctypes.c_void_p()
Guolin Ke's avatar
Guolin Ke committed
2313
            out_num_iterations = ctypes.c_int(0)
2314
2315
2316
2317
            _safe_call(_LIB.LGBM_BoosterLoadModelFromString(
                c_str(model_str),
                ctypes.byref(out_num_iterations),
                ctypes.byref(handle)))
wxchan's avatar
wxchan committed
2318
2319
2320
            state['handle'] = handle
        self.__dict__.update(state)

wxchan's avatar
wxchan committed
2321
    def free_dataset(self):
Nikita Titov's avatar
Nikita Titov committed
2322
2323
2324
2325
2326
2327
2328
        """Free Booster's Datasets.

        Returns
        -------
        self : Booster
            Booster without Datasets.
        """
wxchan's avatar
wxchan committed
2329
2330
        self.__dict__.pop('train_set', None)
        self.__dict__.pop('valid_sets', None)
2331
        self.__num_dataset = 0
Nikita Titov's avatar
Nikita Titov committed
2332
        return self
wxchan's avatar
wxchan committed
2333

2334
2335
2336
    def _free_buffer(self):
        self.__inner_predict_buffer = []
        self.__is_predicted_cur_iter = []
Nikita Titov's avatar
Nikita Titov committed
2337
        return self
2338

2339
2340
2341
2342
2343
2344
2345
    def set_network(
        self,
        machines: Union[List[str], Set[str], str],
        local_listen_port: int = 12400,
        listen_time_out: int = 120,
        num_machines: int = 1
    ) -> "Booster":
2346
2347
2348
2349
        """Set the network configuration.

        Parameters
        ----------
Nikita Titov's avatar
Nikita Titov committed
2350
        machines : list, set or string
2351
            Names of machines.
Nikita Titov's avatar
Nikita Titov committed
2352
        local_listen_port : int, optional (default=12400)
2353
            TCP listen port for local machines.
Nikita Titov's avatar
Nikita Titov committed
2354
        listen_time_out : int, optional (default=120)
2355
            Socket time-out in minutes.
Nikita Titov's avatar
Nikita Titov committed
2356
        num_machines : int, optional (default=1)
2357
            The number of machines for distributed learning application.
Nikita Titov's avatar
Nikita Titov committed
2358
2359
2360
2361
2362

        Returns
        -------
        self : Booster
            Booster with set network.
2363
        """
2364
2365
        if isinstance(machines, (list, set)):
            machines = ','.join(machines)
2366
2367
2368
2369
2370
        _safe_call(_LIB.LGBM_NetworkInit(c_str(machines),
                                         ctypes.c_int(local_listen_port),
                                         ctypes.c_int(listen_time_out),
                                         ctypes.c_int(num_machines)))
        self.network = True
Nikita Titov's avatar
Nikita Titov committed
2371
        return self
2372
2373

    def free_network(self):
Nikita Titov's avatar
Nikita Titov committed
2374
2375
2376
2377
2378
2379
2380
        """Free Booster's network.

        Returns
        -------
        self : Booster
            Booster with freed network.
        """
2381
2382
        _safe_call(_LIB.LGBM_NetworkFree())
        self.network = False
Nikita Titov's avatar
Nikita Titov committed
2383
        return self
2384

2385
2386
2387
    def trees_to_dataframe(self):
        """Parse the fitted model and return in an easy-to-read pandas DataFrame.

2388
2389
2390
2391
2392
2393
2394
2395
2396
2397
2398
        The returned DataFrame has the following columns.

            - ``tree_index`` : int64, which tree a node belongs to. 0-based, so a value of ``6``, for example, means "this node is in the 7th tree".
            - ``node_depth`` : int64, how far a node is from the root of the tree. The root node has a value of ``1``, its direct children are ``2``, etc.
            - ``node_index`` : string, unique identifier for a node.
            - ``left_child`` : string, ``node_index`` of the child node to the left of a split. ``None`` for leaf nodes.
            - ``right_child`` : string, ``node_index`` of the child node to the right of a split. ``None`` for leaf nodes.
            - ``parent_index`` : string, ``node_index`` of this node's parent. ``None`` for the root node.
            - ``split_feature`` : string, name of the feature used for splitting. ``None`` for leaf nodes.
            - ``split_gain`` : float64, gain from adding this split to the tree. ``NaN`` for leaf nodes.
            - ``threshold`` : float64, value of the feature used to decide which side of the split a record will go down. ``NaN`` for leaf nodes.
2399
2400
2401
            - ``decision_type`` : string, logical operator describing how to compare a value to ``threshold``.
              For example, ``split_feature = "Column_10", threshold = 15, decision_type = "<="`` means that
              records where ``Column_10 <= 15`` follow the left side of the split, otherwise follows the right side of the split. ``None`` for leaf nodes.
2402
2403
2404
2405
2406
2407
            - ``missing_direction`` : string, split direction that missing values should go to. ``None`` for leaf nodes.
            - ``missing_type`` : string, describes what types of values are treated as missing.
            - ``value`` : float64, predicted value for this leaf node, multiplied by the learning rate.
            - ``weight`` : float64 or int64, sum of hessian (second-order derivative of objective), summed over observations that fall in this node.
            - ``count`` : int64, number of records in the training data that fall into this node.

2408
2409
2410
2411
2412
2413
2414
2415
2416
2417
2418
2419
2420
2421
2422
2423
2424
2425
2426
2427
2428
2429
2430
2431
2432
2433
2434
2435
2436
2437
2438
2439
2440
2441
2442
2443
        Returns
        -------
        result : pandas DataFrame
            Returns a pandas DataFrame of the parsed model.
        """
        if not PANDAS_INSTALLED:
            raise LightGBMError('This method cannot be run without pandas installed')

        if self.num_trees() == 0:
            raise LightGBMError('There are no trees in this Booster and thus nothing to parse')

        def _is_split_node(tree):
            return 'split_index' in tree.keys()

        def create_node_record(tree, node_depth=1, tree_index=None,
                               feature_names=None, parent_node=None):

            def _get_node_index(tree, tree_index):
                tree_num = str(tree_index) + '-' if tree_index is not None else ''
                is_split = _is_split_node(tree)
                node_type = 'S' if is_split else 'L'
                # if a single node tree it won't have `leaf_index` so return 0
                node_num = str(tree.get('split_index' if is_split else 'leaf_index', 0))
                return tree_num + node_type + node_num

            def _get_split_feature(tree, feature_names):
                if _is_split_node(tree):
                    if feature_names is not None:
                        feature_name = feature_names[tree['split_feature']]
                    else:
                        feature_name = tree['split_feature']
                else:
                    feature_name = None
                return feature_name

            def _is_single_node_tree(tree):
2444
                return set(tree.keys()) == {'leaf_value'}
2445
2446
2447
2448
2449
2450
2451
2452
2453
2454
2455
2456
2457
2458
2459
2460
2461
2462
2463
2464
2465
2466
2467
2468
2469
2470
2471
2472
2473
2474
2475
2476
2477
2478
2479
2480
2481
2482
2483
2484
2485
2486
2487
2488
2489
2490
2491
2492
2493
2494
2495
2496
2497
2498
2499
2500
2501
2502
2503
2504
2505
2506
2507
2508
2509
2510
2511
2512
2513
2514
2515
2516
2517

            # Create the node record, and populate universal data members
            node = OrderedDict()
            node['tree_index'] = tree_index
            node['node_depth'] = node_depth
            node['node_index'] = _get_node_index(tree, tree_index)
            node['left_child'] = None
            node['right_child'] = None
            node['parent_index'] = parent_node
            node['split_feature'] = _get_split_feature(tree, feature_names)
            node['split_gain'] = None
            node['threshold'] = None
            node['decision_type'] = None
            node['missing_direction'] = None
            node['missing_type'] = None
            node['value'] = None
            node['weight'] = None
            node['count'] = None

            # Update values to reflect node type (leaf or split)
            if _is_split_node(tree):
                node['left_child'] = _get_node_index(tree['left_child'], tree_index)
                node['right_child'] = _get_node_index(tree['right_child'], tree_index)
                node['split_gain'] = tree['split_gain']
                node['threshold'] = tree['threshold']
                node['decision_type'] = tree['decision_type']
                node['missing_direction'] = 'left' if tree['default_left'] else 'right'
                node['missing_type'] = tree['missing_type']
                node['value'] = tree['internal_value']
                node['weight'] = tree['internal_weight']
                node['count'] = tree['internal_count']
            else:
                node['value'] = tree['leaf_value']
                if not _is_single_node_tree(tree):
                    node['weight'] = tree['leaf_weight']
                    node['count'] = tree['leaf_count']

            return node

        def tree_dict_to_node_list(tree, node_depth=1, tree_index=None,
                                   feature_names=None, parent_node=None):

            node = create_node_record(tree,
                                      node_depth=node_depth,
                                      tree_index=tree_index,
                                      feature_names=feature_names,
                                      parent_node=parent_node)

            res = [node]

            if _is_split_node(tree):
                # traverse the next level of the tree
                children = ['left_child', 'right_child']
                for child in children:
                    subtree_list = tree_dict_to_node_list(
                        tree[child],
                        node_depth=node_depth + 1,
                        tree_index=tree_index,
                        feature_names=feature_names,
                        parent_node=node['node_index'])
                    # In tree format, "subtree_list" is a list of node records (dicts),
                    # and we add node to the list.
                    res.extend(subtree_list)
            return res

        model_dict = self.dump_model()
        feature_names = model_dict['feature_names']
        model_list = []
        for tree in model_dict['tree_info']:
            model_list.extend(tree_dict_to_node_list(tree['tree_structure'],
                                                     tree_index=tree['tree_index'],
                                                     feature_names=feature_names))

2518
        return pd_DataFrame(model_list, columns=model_list[0].keys())
2519

wxchan's avatar
wxchan committed
2520
    def set_train_data_name(self, name):
2521
2522
2523
2524
        """Set the name to the training Dataset.

        Parameters
        ----------
Nikita Titov's avatar
Nikita Titov committed
2525
2526
2527
2528
2529
2530
2531
        name : string
            Name for the training Dataset.

        Returns
        -------
        self : Booster
            Booster with set training Dataset name.
2532
        """
2533
        self._train_data_name = name
Nikita Titov's avatar
Nikita Titov committed
2534
        return self
wxchan's avatar
wxchan committed
2535
2536

    def add_valid(self, data, name):
2537
        """Add validation data.
wxchan's avatar
wxchan committed
2538
2539
2540
2541

        Parameters
        ----------
        data : Dataset
2542
2543
2544
            Validation data.
        name : string
            Name of validation data.
Nikita Titov's avatar
Nikita Titov committed
2545
2546
2547
2548
2549

        Returns
        -------
        self : Booster
            Booster with set validation data.
wxchan's avatar
wxchan committed
2550
        """
Guolin Ke's avatar
Guolin Ke committed
2551
        if not isinstance(data, Dataset):
2552
2553
            raise TypeError('Validation data should be Dataset instance, met {}'
                            .format(type(data).__name__))
Guolin Ke's avatar
Guolin Ke committed
2554
        if data._predictor is not self.__init_predictor:
2555
2556
            raise LightGBMError("Add validation data failed, "
                                "you should use same predictor for these data")
wxchan's avatar
wxchan committed
2557
2558
        _safe_call(_LIB.LGBM_BoosterAddValidData(
            self.handle,
wxchan's avatar
wxchan committed
2559
            data.construct().handle))
wxchan's avatar
wxchan committed
2560
2561
2562
2563
2564
        self.valid_sets.append(data)
        self.name_valid_sets.append(name)
        self.__num_dataset += 1
        self.__inner_predict_buffer.append(None)
        self.__is_predicted_cur_iter.append(False)
Nikita Titov's avatar
Nikita Titov committed
2565
        return self
wxchan's avatar
wxchan committed
2566
2567

    def reset_parameter(self, params):
2568
        """Reset parameters of Booster.
wxchan's avatar
wxchan committed
2569
2570
2571
2572

        Parameters
        ----------
        params : dict
2573
            New parameters for Booster.
Nikita Titov's avatar
Nikita Titov committed
2574
2575
2576
2577
2578

        Returns
        -------
        self : Booster
            Booster with new parameters.
wxchan's avatar
wxchan committed
2579
2580
2581
2582
2583
2584
        """
        params_str = param_dict_to_str(params)
        if params_str:
            _safe_call(_LIB.LGBM_BoosterResetParameter(
                self.handle,
                c_str(params_str)))
Guolin Ke's avatar
Guolin Ke committed
2585
        self.params.update(params)
Nikita Titov's avatar
Nikita Titov committed
2586
        return self
wxchan's avatar
wxchan committed
2587
2588

    def update(self, train_set=None, fobj=None):
Nikita Titov's avatar
Nikita Titov committed
2589
        """Update Booster for one iteration.
2590

wxchan's avatar
wxchan committed
2591
2592
        Parameters
        ----------
2593
2594
2595
2596
        train_set : Dataset or None, optional (default=None)
            Training data.
            If None, last training data is used.
        fobj : callable or None, optional (default=None)
wxchan's avatar
wxchan committed
2597
            Customized objective function.
2598
2599
2600
2601
2602
            Should accept two parameters: preds, train_data,
            and return (grad, hess).

                preds : list or numpy 1-D array
                    The predicted values.
2603
2604
                    Predicted values are returned before any transformation,
                    e.g. they are raw margin instead of probability of positive class for binary task.
2605
2606
2607
                train_data : Dataset
                    The training dataset.
                grad : list or numpy 1-D array
2608
2609
                    The value of the first order derivative (gradient) of the loss
                    with respect to the elements of preds for each sample point.
2610
                hess : list or numpy 1-D array
2611
2612
                    The value of the second order derivative (Hessian) of the loss
                    with respect to the elements of preds for each sample point.
wxchan's avatar
wxchan committed
2613

2614
2615
            For multi-class task, the preds is group by class_id first, then group by row_id.
            If you want to get i-th row preds in j-th class, the access way is score[j * num_data + i]
2616
2617
            and you should group grad and hess in this way as well.

wxchan's avatar
wxchan committed
2618
2619
        Returns
        -------
2620
2621
        is_finished : bool
            Whether the update was successfully finished.
wxchan's avatar
wxchan committed
2622
        """
2623
        # need reset training data
2624
2625
2626
2627
2628
2629
        if train_set is None and self.train_set_version != self.train_set.version:
            train_set = self.train_set
            is_the_same_train_set = False
        else:
            is_the_same_train_set = train_set is self.train_set and self.train_set_version == train_set.version
        if train_set is not None and not is_the_same_train_set:
Guolin Ke's avatar
Guolin Ke committed
2630
            if not isinstance(train_set, Dataset):
2631
2632
                raise TypeError('Training data should be Dataset instance, met {}'
                                .format(type(train_set).__name__))
Guolin Ke's avatar
Guolin Ke committed
2633
            if train_set._predictor is not self.__init_predictor:
2634
2635
                raise LightGBMError("Replace training data failed, "
                                    "you should use same predictor for these data")
wxchan's avatar
wxchan committed
2636
2637
2638
            self.train_set = train_set
            _safe_call(_LIB.LGBM_BoosterResetTrainingData(
                self.handle,
wxchan's avatar
wxchan committed
2639
                self.train_set.construct().handle))
wxchan's avatar
wxchan committed
2640
            self.__inner_predict_buffer[0] = None
2641
            self.train_set_version = self.train_set.version
wxchan's avatar
wxchan committed
2642
2643
        is_finished = ctypes.c_int(0)
        if fobj is None:
2644
            if self.__set_objective_to_none:
2645
                raise LightGBMError('Cannot update due to null objective function.')
wxchan's avatar
wxchan committed
2646
2647
2648
            _safe_call(_LIB.LGBM_BoosterUpdateOneIter(
                self.handle,
                ctypes.byref(is_finished)))
2649
            self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
wxchan's avatar
wxchan committed
2650
2651
            return is_finished.value == 1
        else:
2652
            if not self.__set_objective_to_none:
Nikita Titov's avatar
Nikita Titov committed
2653
                self.reset_parameter({"objective": "none"}).__set_objective_to_none = True
wxchan's avatar
wxchan committed
2654
2655
2656
2657
            grad, hess = fobj(self.__inner_predict(0), self.train_set)
            return self.__boost(grad, hess)

    def __boost(self, grad, hess):
2658
        """Boost Booster for one iteration with customized gradient statistics.
Nikita Titov's avatar
Nikita Titov committed
2659

Nikita Titov's avatar
Nikita Titov committed
2660
2661
        .. note::

2662
2663
            Score is returned before any transformation,
            e.g. it is raw margin instead of probability of positive class for binary task.
Nikita Titov's avatar
Nikita Titov committed
2664
2665
2666
            For multi-class task, the score is group by class_id first, then group by row_id.
            If you want to get i-th row score in j-th class, the access way is score[j * num_data + i]
            and you should group grad and hess in this way as well.
2667

wxchan's avatar
wxchan committed
2668
2669
        Parameters
        ----------
2670
        grad : list or numpy 1-D array
2671
2672
            The value of the first order derivative (gradient) of the loss
            with respect to the elements of score for each sample point.
2673
        hess : list or numpy 1-D array
2674
2675
            The value of the second order derivative (Hessian) of the loss
            with respect to the elements of score for each sample point.
wxchan's avatar
wxchan committed
2676
2677
2678

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
2679
2680
        is_finished : bool
            Whether the boost was successfully finished.
wxchan's avatar
wxchan committed
2681
        """
2682
2683
        grad = list_to_1d_numpy(grad, name='gradient')
        hess = list_to_1d_numpy(hess, name='hessian')
2684
2685
        assert grad.flags.c_contiguous
        assert hess.flags.c_contiguous
wxchan's avatar
wxchan committed
2686
        if len(grad) != len(hess):
2687
2688
            raise ValueError("Lengths of gradient({}) and hessian({}) don't match"
                             .format(len(grad), len(hess)))
wxchan's avatar
wxchan committed
2689
2690
2691
2692
2693
2694
        is_finished = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterUpdateOneIterCustom(
            self.handle,
            grad.ctypes.data_as(ctypes.POINTER(ctypes.c_float)),
            hess.ctypes.data_as(ctypes.POINTER(ctypes.c_float)),
            ctypes.byref(is_finished)))
2695
        self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
wxchan's avatar
wxchan committed
2696
2697
2698
        return is_finished.value == 1

    def rollback_one_iter(self):
Nikita Titov's avatar
Nikita Titov committed
2699
2700
2701
2702
2703
2704
2705
        """Rollback one iteration.

        Returns
        -------
        self : Booster
            Booster with rolled back one iteration.
        """
wxchan's avatar
wxchan committed
2706
2707
        _safe_call(_LIB.LGBM_BoosterRollbackOneIter(
            self.handle))
2708
        self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
Nikita Titov's avatar
Nikita Titov committed
2709
        return self
wxchan's avatar
wxchan committed
2710
2711

    def current_iteration(self):
2712
2713
2714
2715
2716
2717
2718
        """Get the index of the current iteration.

        Returns
        -------
        cur_iter : int
            The index of the current iteration.
        """
Guolin Ke's avatar
Guolin Ke committed
2719
        out_cur_iter = ctypes.c_int(0)
wxchan's avatar
wxchan committed
2720
2721
2722
2723
2724
        _safe_call(_LIB.LGBM_BoosterGetCurrentIteration(
            self.handle,
            ctypes.byref(out_cur_iter)))
        return out_cur_iter.value

2725
2726
2727
2728
2729
2730
2731
2732
2733
2734
2735
2736
2737
2738
2739
2740
2741
2742
2743
2744
2745
2746
2747
2748
2749
2750
2751
2752
    def num_model_per_iteration(self):
        """Get number of models per iteration.

        Returns
        -------
        model_per_iter : int
            The number of models per iteration.
        """
        model_per_iter = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterNumModelPerIteration(
            self.handle,
            ctypes.byref(model_per_iter)))
        return model_per_iter.value

    def num_trees(self):
        """Get number of weak sub-models.

        Returns
        -------
        num_trees : int
            The number of weak sub-models.
        """
        num_trees = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterNumberOfTotalModel(
            self.handle,
            ctypes.byref(num_trees)))
        return num_trees.value

2753
2754
2755
2756
2757
2758
2759
2760
2761
2762
2763
2764
2765
2766
2767
2768
2769
2770
2771
2772
2773
2774
2775
2776
2777
2778
2779
2780
    def upper_bound(self):
        """Get upper bound value of a model.

        Returns
        -------
        upper_bound : double
            Upper bound value of the model.
        """
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetUpperBoundValue(
            self.handle,
            ctypes.byref(ret)))
        return ret.value

    def lower_bound(self):
        """Get lower bound value of a model.

        Returns
        -------
        lower_bound : double
            Lower bound value of the model.
        """
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetLowerBoundValue(
            self.handle,
            ctypes.byref(ret)))
        return ret.value

wxchan's avatar
wxchan committed
2781
    def eval(self, data, name, feval=None):
2782
        """Evaluate for data.
wxchan's avatar
wxchan committed
2783
2784
2785

        Parameters
        ----------
2786
2787
2788
2789
2790
        data : Dataset
            Data for the evaluating.
        name : string
            Name of the data.
        feval : callable or None, optional (default=None)
2791
            Customized evaluation function.
2792
            Should accept two parameters: preds, eval_data,
2793
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
2794
2795
2796

                preds : list or numpy 1-D array
                    The predicted values.
2797
2798
                    If ``fobj`` is specified, predicted values are returned before any transformation,
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
2799
2800
2801
                eval_data : Dataset
                    The evaluation dataset.
                eval_name : string
2802
                    The name of evaluation function (without whitespaces).
2803
2804
2805
2806
2807
                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

2808
2809
            For multi-class task, the preds is group by class_id first, then group by row_id.
            If you want to get i-th row preds in j-th class, the access way is preds[j * num_data + i].
2810

wxchan's avatar
wxchan committed
2811
2812
        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
2813
        result : list
2814
            List with evaluation results.
wxchan's avatar
wxchan committed
2815
        """
Guolin Ke's avatar
Guolin Ke committed
2816
2817
        if not isinstance(data, Dataset):
            raise TypeError("Can only eval for Dataset instance")
wxchan's avatar
wxchan committed
2818
2819
2820
2821
        data_idx = -1
        if data is self.train_set:
            data_idx = 0
        else:
2822
            for i in range(len(self.valid_sets)):
wxchan's avatar
wxchan committed
2823
2824
2825
                if data is self.valid_sets[i]:
                    data_idx = i + 1
                    break
2826
        # need to push new valid data
wxchan's avatar
wxchan committed
2827
2828
2829
2830
2831
2832
2833
        if data_idx == -1:
            self.add_valid(data, name)
            data_idx = self.__num_dataset - 1

        return self.__inner_eval(name, data_idx, feval)

    def eval_train(self, feval=None):
2834
        """Evaluate for training data.
wxchan's avatar
wxchan committed
2835
2836
2837

        Parameters
        ----------
2838
        feval : callable or None, optional (default=None)
2839
            Customized evaluation function.
2840
2841
            Should accept two parameters: preds, train_data,
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
2842
2843
2844

                preds : list or numpy 1-D array
                    The predicted values.
2845
2846
                    If ``fobj`` is specified, predicted values are returned before any transformation,
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
2847
2848
2849
                train_data : Dataset
                    The training dataset.
                eval_name : string
2850
                    The name of evaluation function (without whitespaces).
2851
2852
2853
2854
2855
                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

2856
2857
            For multi-class task, the preds is group by class_id first, then group by row_id.
            If you want to get i-th row preds in j-th class, the access way is preds[j * num_data + i].
wxchan's avatar
wxchan committed
2858
2859
2860

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
2861
        result : list
2862
            List with evaluation results.
wxchan's avatar
wxchan committed
2863
        """
2864
        return self.__inner_eval(self._train_data_name, 0, feval)
wxchan's avatar
wxchan committed
2865
2866

    def eval_valid(self, feval=None):
2867
        """Evaluate for validation data.
wxchan's avatar
wxchan committed
2868
2869
2870

        Parameters
        ----------
2871
        feval : callable or None, optional (default=None)
2872
            Customized evaluation function.
2873
            Should accept two parameters: preds, valid_data,
2874
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
2875
2876
2877

                preds : list or numpy 1-D array
                    The predicted values.
2878
2879
                    If ``fobj`` is specified, predicted values are returned before any transformation,
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
2880
2881
2882
                valid_data : Dataset
                    The validation dataset.
                eval_name : string
2883
                    The name of evaluation function (without whitespaces).
2884
2885
2886
2887
2888
                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

2889
2890
            For multi-class task, the preds is group by class_id first, then group by row_id.
            If you want to get i-th row preds in j-th class, the access way is preds[j * num_data + i].
wxchan's avatar
wxchan committed
2891
2892
2893

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
2894
        result : list
2895
            List with evaluation results.
wxchan's avatar
wxchan committed
2896
        """
2897
        return [item for i in range(1, self.__num_dataset)
wxchan's avatar
wxchan committed
2898
                for item in self.__inner_eval(self.name_valid_sets[i - 1], i, feval)]
wxchan's avatar
wxchan committed
2899

2900
    def save_model(self, filename, num_iteration=None, start_iteration=0, importance_type='split'):
2901
        """Save Booster to file.
wxchan's avatar
wxchan committed
2902
2903
2904

        Parameters
        ----------
2905
2906
        filename : string
            Filename to save Booster.
2907
2908
2909
2910
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be saved.
            If None, if the best iteration exists, it is saved; otherwise, all iterations are saved.
            If <= 0, all iterations are saved.
Nikita Titov's avatar
Nikita Titov committed
2911
        start_iteration : int, optional (default=0)
2912
            Start index of the iteration that should be saved.
2913
2914
2915
2916
        importance_type : string, optional (default="split")
            What type of feature importance should be saved.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
Nikita Titov's avatar
Nikita Titov committed
2917
2918
2919
2920
2921

        Returns
        -------
        self : Booster
            Returns self.
wxchan's avatar
wxchan committed
2922
        """
2923
        if num_iteration is None:
2924
            num_iteration = self.best_iteration
2925
        importance_type_int = FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
wxchan's avatar
wxchan committed
2926
2927
        _safe_call(_LIB.LGBM_BoosterSaveModel(
            self.handle,
2928
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
2929
            ctypes.c_int(num_iteration),
2930
            ctypes.c_int(importance_type_int),
wxchan's avatar
wxchan committed
2931
            c_str(filename)))
2932
        _dump_pandas_categorical(self.pandas_categorical, filename)
Nikita Titov's avatar
Nikita Titov committed
2933
        return self
wxchan's avatar
wxchan committed
2934

2935
    def shuffle_models(self, start_iteration=0, end_iteration=-1):
2936
        """Shuffle models.
Nikita Titov's avatar
Nikita Titov committed
2937

2938
2939
2940
        Parameters
        ----------
        start_iteration : int, optional (default=0)
2941
            The first iteration that will be shuffled.
2942
2943
        end_iteration : int, optional (default=-1)
            The last iteration that will be shuffled.
2944
            If <= 0, means the last available iteration.
2945

Nikita Titov's avatar
Nikita Titov committed
2946
2947
2948
2949
        Returns
        -------
        self : Booster
            Booster with shuffled models.
2950
        """
2951
2952
        _safe_call(_LIB.LGBM_BoosterShuffleModels(
            self.handle,
Guolin Ke's avatar
Guolin Ke committed
2953
2954
            ctypes.c_int(start_iteration),
            ctypes.c_int(end_iteration)))
Nikita Titov's avatar
Nikita Titov committed
2955
        return self
2956
2957
2958
2959
2960
2961

    def model_from_string(self, model_str, verbose=True):
        """Load Booster from a string.

        Parameters
        ----------
Nikita Titov's avatar
Nikita Titov committed
2962
        model_str : string
2963
            Model will be loaded from this string.
Nikita Titov's avatar
Nikita Titov committed
2964
2965
        verbose : bool, optional (default=True)
            Whether to print messages while loading model.
2966
2967
2968

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
2969
        self : Booster
2970
2971
            Loaded Booster object.
        """
2972
2973
2974
2975
        if self.handle is not None:
            _safe_call(_LIB.LGBM_BoosterFree(self.handle))
        self._free_buffer()
        self.handle = ctypes.c_void_p()
2976
2977
2978
2979
2980
2981
2982
2983
2984
        out_num_iterations = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterLoadModelFromString(
            c_str(model_str),
            ctypes.byref(out_num_iterations),
            ctypes.byref(self.handle)))
        out_num_class = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetNumClasses(
            self.handle,
            ctypes.byref(out_num_class)))
2985
        if verbose:
2986
            _log_info('Finished loading model, total used %d iterations' % int(out_num_iterations.value))
2987
        self.__num_class = out_num_class.value
2988
        self.pandas_categorical = _load_pandas_categorical(model_str=model_str)
2989
2990
        return self

2991
    def model_to_string(self, num_iteration=None, start_iteration=0, importance_type='split'):
2992
        """Save Booster to string.
2993

2994
2995
2996
2997
2998
2999
        Parameters
        ----------
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be saved.
            If None, if the best iteration exists, it is saved; otherwise, all iterations are saved.
            If <= 0, all iterations are saved.
Nikita Titov's avatar
Nikita Titov committed
3000
        start_iteration : int, optional (default=0)
3001
            Start index of the iteration that should be saved.
3002
3003
3004
3005
        importance_type : string, optional (default="split")
            What type of feature importance should be saved.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
3006
3007
3008

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
3009
        str_repr : string
3010
3011
            String representation of Booster.
        """
3012
        if num_iteration is None:
3013
            num_iteration = self.best_iteration
3014
        importance_type_int = FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
3015
        buffer_len = 1 << 20
3016
        tmp_out_len = ctypes.c_int64(0)
3017
3018
3019
3020
        string_buffer = ctypes.create_string_buffer(buffer_len)
        ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
        _safe_call(_LIB.LGBM_BoosterSaveModelToString(
            self.handle,
3021
            ctypes.c_int(start_iteration),
3022
            ctypes.c_int(num_iteration),
3023
            ctypes.c_int(importance_type_int),
3024
            ctypes.c_int64(buffer_len),
3025
3026
3027
            ctypes.byref(tmp_out_len),
            ptr_string_buffer))
        actual_len = tmp_out_len.value
3028
        # if buffer length is not long enough, re-allocate a buffer
3029
3030
3031
3032
3033
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
            ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
            _safe_call(_LIB.LGBM_BoosterSaveModelToString(
                self.handle,
3034
                ctypes.c_int(start_iteration),
3035
                ctypes.c_int(num_iteration),
3036
                ctypes.c_int(importance_type_int),
3037
                ctypes.c_int64(actual_len),
3038
3039
                ctypes.byref(tmp_out_len),
                ptr_string_buffer))
3040
        ret = string_buffer.value.decode('utf-8')
3041
3042
        ret += _dump_pandas_categorical(self.pandas_categorical)
        return ret
3043

3044
    def dump_model(self, num_iteration=None, start_iteration=0, importance_type='split'):
Nikita Titov's avatar
Nikita Titov committed
3045
        """Dump Booster to JSON format.
wxchan's avatar
wxchan committed
3046

3047
3048
        Parameters
        ----------
3049
3050
3051
3052
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be dumped.
            If None, if the best iteration exists, it is dumped; otherwise, all iterations are dumped.
            If <= 0, all iterations are dumped.
Nikita Titov's avatar
Nikita Titov committed
3053
        start_iteration : int, optional (default=0)
3054
            Start index of the iteration that should be dumped.
3055
3056
3057
3058
        importance_type : string, optional (default="split")
            What type of feature importance should be dumped.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
3059

wxchan's avatar
wxchan committed
3060
3061
        Returns
        -------
3062
        json_repr : dict
Nikita Titov's avatar
Nikita Titov committed
3063
            JSON format of Booster.
wxchan's avatar
wxchan committed
3064
        """
3065
        if num_iteration is None:
3066
            num_iteration = self.best_iteration
3067
        importance_type_int = FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
wxchan's avatar
wxchan committed
3068
        buffer_len = 1 << 20
3069
        tmp_out_len = ctypes.c_int64(0)
wxchan's avatar
wxchan committed
3070
3071
3072
3073
        string_buffer = ctypes.create_string_buffer(buffer_len)
        ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
        _safe_call(_LIB.LGBM_BoosterDumpModel(
            self.handle,
3074
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
3075
            ctypes.c_int(num_iteration),
3076
            ctypes.c_int(importance_type_int),
3077
            ctypes.c_int64(buffer_len),
wxchan's avatar
wxchan committed
3078
            ctypes.byref(tmp_out_len),
Guolin Ke's avatar
Guolin Ke committed
3079
            ptr_string_buffer))
wxchan's avatar
wxchan committed
3080
        actual_len = tmp_out_len.value
3081
        # if buffer length is not long enough, reallocate a buffer
wxchan's avatar
wxchan committed
3082
3083
3084
3085
3086
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
            ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
            _safe_call(_LIB.LGBM_BoosterDumpModel(
                self.handle,
3087
                ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
3088
                ctypes.c_int(num_iteration),
3089
                ctypes.c_int(importance_type_int),
3090
                ctypes.c_int64(actual_len),
wxchan's avatar
wxchan committed
3091
                ctypes.byref(tmp_out_len),
Guolin Ke's avatar
Guolin Ke committed
3092
                ptr_string_buffer))
3093
        ret = json.loads(string_buffer.value.decode('utf-8'))
3094
3095
3096
        ret['pandas_categorical'] = json.loads(json.dumps(self.pandas_categorical,
                                                          default=json_default_with_numpy))
        return ret
wxchan's avatar
wxchan committed
3097

3098
    def predict(self, data, start_iteration=0, num_iteration=None,
3099
                raw_score=False, pred_leaf=False, pred_contrib=False,
3100
                data_has_header=False, is_reshape=True, **kwargs):
3101
        """Make a prediction.
wxchan's avatar
wxchan committed
3102
3103
3104

        Parameters
        ----------
3105
        data : string, numpy array, pandas DataFrame, H2O DataTable's Frame or scipy.sparse
3106
3107
            Data source for prediction.
            If string, it represents the path to txt file.
3108
        start_iteration : int, optional (default=0)
3109
            Start index of the iteration to predict.
3110
            If <= 0, starts from the first iteration.
3111
        num_iteration : int or None, optional (default=None)
3112
3113
3114
3115
            Total number of iterations used in the prediction.
            If None, if the best iteration exists and start_iteration <= 0, the best iteration is used;
            otherwise, all iterations from ``start_iteration`` are used (no limits).
            If <= 0, all iterations from ``start_iteration`` are used (no limits).
3116
3117
3118
3119
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        pred_leaf : bool, optional (default=False)
            Whether to predict leaf index.
3120
3121
        pred_contrib : bool, optional (default=False)
            Whether to predict feature contributions.
3122

Nikita Titov's avatar
Nikita Titov committed
3123
3124
3125
3126
3127
3128
3129
            .. note::

                If you want to get more explanations for your model's predictions using SHAP values,
                like SHAP interaction values,
                you can install the shap package (https://github.com/slundberg/shap).
                Note that unlike the shap package, with ``pred_contrib`` we return a matrix with an extra
                column, where the last column is the expected value.
3130

3131
3132
3133
3134
3135
        data_has_header : bool, optional (default=False)
            Whether the data has header.
            Used only if data is string.
        is_reshape : bool, optional (default=True)
            If True, result is reshaped to [nrow, ncol].
3136
3137
        **kwargs
            Other parameters for the prediction.
wxchan's avatar
wxchan committed
3138
3139
3140

        Returns
        -------
3141
        result : numpy array, scipy.sparse or list of scipy.sparse
3142
            Prediction result.
3143
            Can be sparse or a list of sparse objects (each element represents predictions for one class) for feature contributions (when ``pred_contrib=True``).
wxchan's avatar
wxchan committed
3144
        """
3145
        predictor = self._to_predictor(deepcopy(kwargs))
3146
        if num_iteration is None:
3147
            if start_iteration <= 0:
3148
3149
3150
3151
                num_iteration = self.best_iteration
            else:
                num_iteration = -1
        return predictor.predict(data, start_iteration, num_iteration,
3152
3153
                                 raw_score, pred_leaf, pred_contrib,
                                 data_has_header, is_reshape)
wxchan's avatar
wxchan committed
3154

3155
    def refit(self, data, label, decay_rate=0.9, **kwargs):
Guolin Ke's avatar
Guolin Ke committed
3156
3157
3158
3159
        """Refit the existing Booster by new data.

        Parameters
        ----------
3160
        data : string, numpy array, pandas DataFrame, H2O DataTable's Frame or scipy.sparse
Guolin Ke's avatar
Guolin Ke committed
3161
3162
            Data source for refit.
            If string, it represents the path to txt file.
3163
        label : list, numpy 1-D array or pandas Series / one-column DataFrame
Guolin Ke's avatar
Guolin Ke committed
3164
3165
            Label for refit.
        decay_rate : float, optional (default=0.9)
3166
3167
            Decay rate of refit,
            will use ``leaf_output = decay_rate * old_leaf_output + (1.0 - decay_rate) * new_leaf_output`` to refit trees.
3168
3169
        **kwargs
            Other parameters for refit.
3170
            These parameters will be passed to ``predict`` method.
Guolin Ke's avatar
Guolin Ke committed
3171
3172
3173
3174
3175
3176

        Returns
        -------
        result : Booster
            Refitted Booster.
        """
3177
3178
        if self.__set_objective_to_none:
            raise LightGBMError('Cannot refit due to null objective function.')
3179
        predictor = self._to_predictor(deepcopy(kwargs))
3180
        leaf_preds = predictor.predict(data, -1, pred_leaf=True)
3181
        nrow, ncol = leaf_preds.shape
3182
3183
3184
3185
        out_is_linear = ctypes.c_bool(False)
        _safe_call(_LIB.LGBM_BoosterGetLinear(
            self.handle,
            ctypes.byref(out_is_linear)))
3186
        new_params = deepcopy(self.params)
3187
3188
        new_params["linear_tree"] = out_is_linear.value
        train_set = Dataset(data, label, silent=True, params=new_params)
3189
        new_params['refit_decay_rate'] = decay_rate
3190
        new_booster = Booster(new_params, train_set)
Guolin Ke's avatar
Guolin Ke committed
3191
3192
3193
3194
3195
        # Copy models
        _safe_call(_LIB.LGBM_BoosterMerge(
            new_booster.handle,
            predictor.handle))
        leaf_preds = leaf_preds.reshape(-1)
3196
        ptr_data, _, _ = c_int_array(leaf_preds)
Guolin Ke's avatar
Guolin Ke committed
3197
3198
3199
3200
3201
        _safe_call(_LIB.LGBM_BoosterRefit(
            new_booster.handle,
            ptr_data,
            ctypes.c_int(nrow),
            ctypes.c_int(ncol)))
3202
3203
        new_booster.network = self.network
        new_booster.__attr = self.__attr.copy()
Guolin Ke's avatar
Guolin Ke committed
3204
3205
        return new_booster

3206
    def get_leaf_output(self, tree_id, leaf_id):
3207
3208
3209
3210
3211
3212
3213
3214
3215
3216
3217
3218
3219
3220
        """Get the output of a leaf.

        Parameters
        ----------
        tree_id : int
            The index of the tree.
        leaf_id : int
            The index of the leaf in the tree.

        Returns
        -------
        result : float
            The output of the leaf.
        """
3221
3222
3223
3224
3225
3226
3227
3228
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetLeafValue(
            self.handle,
            ctypes.c_int(tree_id),
            ctypes.c_int(leaf_id),
            ctypes.byref(ret)))
        return ret.value

3229
    def _to_predictor(self, pred_parameter=None):
3230
        """Convert to predictor."""
3231
        predictor = _InnerPredictor(booster_handle=self.handle, pred_parameter=pred_parameter)
3232
        predictor.pandas_categorical = self.pandas_categorical
wxchan's avatar
wxchan committed
3233
3234
        return predictor

3235
    def num_feature(self):
3236
3237
3238
3239
3240
3241
3242
        """Get number of features.

        Returns
        -------
        num_feature : int
            The number of features.
        """
3243
3244
3245
3246
3247
3248
        out_num_feature = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetNumFeature(
            self.handle,
            ctypes.byref(out_num_feature)))
        return out_num_feature.value

wxchan's avatar
wxchan committed
3249
    def feature_name(self):
3250
        """Get names of features.
wxchan's avatar
wxchan committed
3251
3252
3253

        Returns
        -------
3254
3255
        result : list
            List with names of features.
wxchan's avatar
wxchan committed
3256
        """
3257
        num_feature = self.num_feature()
3258
        # Get name of features
wxchan's avatar
wxchan committed
3259
        tmp_out_len = ctypes.c_int(0)
3260
3261
        reserved_string_buffer_size = 255
        required_string_buffer_size = ctypes.c_size_t(0)
3262
        string_buffers = [ctypes.create_string_buffer(reserved_string_buffer_size) for i in range(num_feature)]
wxchan's avatar
wxchan committed
3263
3264
3265
        ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
        _safe_call(_LIB.LGBM_BoosterGetFeatureNames(
            self.handle,
3266
            ctypes.c_int(num_feature),
wxchan's avatar
wxchan committed
3267
            ctypes.byref(tmp_out_len),
3268
            ctypes.c_size_t(reserved_string_buffer_size),
3269
            ctypes.byref(required_string_buffer_size),
wxchan's avatar
wxchan committed
3270
3271
3272
            ptr_string_buffers))
        if num_feature != tmp_out_len.value:
            raise ValueError("Length of feature names doesn't equal with num_feature")
3273
3274
3275
3276
3277
        if reserved_string_buffer_size < required_string_buffer_size.value:
            raise BufferError(
                "Allocated feature name buffer size ({}) was inferior to the needed size ({})."
                .format(reserved_string_buffer_size, required_string_buffer_size.value)
            )
3278
        return [string_buffers[i].value.decode('utf-8') for i in range(num_feature)]
wxchan's avatar
wxchan committed
3279

3280
    def feature_importance(self, importance_type='split', iteration=None):
3281
        """Get feature importances.
3282

3283
3284
        Parameters
        ----------
3285
3286
3287
3288
        importance_type : string, optional (default="split")
            How the importance is calculated.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
3289
3290
3291
3292
        iteration : int or None, optional (default=None)
            Limit number of iterations in the feature importance calculation.
            If None, if the best iteration exists, it is used; otherwise, all trees are used.
            If <= 0, all trees are used (no limits).
3293

3294
3295
        Returns
        -------
3296
3297
        result : numpy array
            Array with feature importances.
3298
        """
3299
3300
        if iteration is None:
            iteration = self.best_iteration
3301
        importance_type_int = FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
Nikita Titov's avatar
Nikita Titov committed
3302
        result = np.zeros(self.num_feature(), dtype=np.float64)
3303
3304
3305
3306
3307
3308
        _safe_call(_LIB.LGBM_BoosterFeatureImportance(
            self.handle,
            ctypes.c_int(iteration),
            ctypes.c_int(importance_type_int),
            result.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
        if importance_type_int == 0:
3309
            return result.astype(np.int32)
3310
3311
        else:
            return result
3312

3313
3314
3315
3316
3317
3318
3319
3320
3321
    def get_split_value_histogram(self, feature, bins=None, xgboost_style=False):
        """Get split value histogram for the specified feature.

        Parameters
        ----------
        feature : int or string
            The feature name or index the histogram is calculated for.
            If int, interpreted as index.
            If string, interpreted as name.
3322

Nikita Titov's avatar
Nikita Titov committed
3323
3324
3325
            .. warning::

                Categorical features are not supported.
3326

3327
3328
3329
3330
3331
3332
3333
3334
3335
3336
3337
3338
3339
3340
3341
3342
3343
3344
3345
3346
3347
3348
        bins : int, string or None, optional (default=None)
            The maximum number of bins.
            If None, or int and > number of unique split values and ``xgboost_style=True``,
            the number of bins equals number of unique split values.
            If string, it should be one from the list of the supported values by ``numpy.histogram()`` function.
        xgboost_style : bool, optional (default=False)
            Whether the returned result should be in the same form as it is in XGBoost.
            If False, the returned value is tuple of 2 numpy arrays as it is in ``numpy.histogram()`` function.
            If True, the returned value is matrix, in which the first column is the right edges of non-empty bins
            and the second one is the histogram values.

        Returns
        -------
        result_tuple : tuple of 2 numpy arrays
            If ``xgboost_style=False``, the values of the histogram of used splitting values for the specified feature
            and the bin edges.
        result_array_like : numpy array or pandas DataFrame (if pandas is installed)
            If ``xgboost_style=True``, the histogram of used splitting values for the specified feature.
        """
        def add(root):
            """Recursively add thresholds."""
            if 'split_index' in root:  # non-leaf
3349
                if feature_names is not None and isinstance(feature, str):
3350
3351
3352
3353
                    split_feature = feature_names[root['split_feature']]
                else:
                    split_feature = root['split_feature']
                if split_feature == feature:
3354
                    if isinstance(root['threshold'], str):
3355
3356
3357
                        raise LightGBMError('Cannot compute split value histogram for the categorical feature')
                    else:
                        values.append(root['threshold'])
3358
3359
3360
3361
3362
3363
3364
3365
3366
3367
                add(root['left_child'])
                add(root['right_child'])

        model = self.dump_model()
        feature_names = model.get('feature_names')
        tree_infos = model['tree_info']
        values = []
        for tree_info in tree_infos:
            add(tree_info['tree_structure'])

3368
        if bins is None or isinstance(bins, int) and xgboost_style:
3369
3370
3371
3372
3373
3374
3375
            n_unique = len(np.unique(values))
            bins = max(min(n_unique, bins) if bins is not None else n_unique, 1)
        hist, bin_edges = np.histogram(values, bins=bins)
        if xgboost_style:
            ret = np.column_stack((bin_edges[1:], hist))
            ret = ret[ret[:, 1] > 0]
            if PANDAS_INSTALLED:
3376
                return pd_DataFrame(ret, columns=['SplitValue', 'Count'])
3377
3378
3379
3380
3381
            else:
                return ret
        else:
            return hist, bin_edges

wxchan's avatar
wxchan committed
3382
    def __inner_eval(self, data_name, data_idx, feval=None):
3383
        """Evaluate training or validation data."""
wxchan's avatar
wxchan committed
3384
        if data_idx >= self.__num_dataset:
3385
            raise ValueError("Data_idx should be smaller than number of dataset")
wxchan's avatar
wxchan committed
3386
3387
3388
        self.__get_eval_info()
        ret = []
        if self.__num_inner_eval > 0:
3389
            result = np.zeros(self.__num_inner_eval, dtype=np.float64)
Guolin Ke's avatar
Guolin Ke committed
3390
            tmp_out_len = ctypes.c_int(0)
wxchan's avatar
wxchan committed
3391
3392
            _safe_call(_LIB.LGBM_BoosterGetEval(
                self.handle,
Guolin Ke's avatar
Guolin Ke committed
3393
                ctypes.c_int(data_idx),
wxchan's avatar
wxchan committed
3394
                ctypes.byref(tmp_out_len),
Guolin Ke's avatar
Guolin Ke committed
3395
                result.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
wxchan's avatar
wxchan committed
3396
            if tmp_out_len.value != self.__num_inner_eval:
3397
                raise ValueError("Wrong length of eval results")
3398
            for i in range(self.__num_inner_eval):
3399
3400
                ret.append((data_name, self.__name_inner_eval[i],
                            result[i], self.__higher_better_inner_eval[i]))
3401
3402
        if callable(feval):
            feval = [feval]
wxchan's avatar
wxchan committed
3403
3404
3405
3406
3407
        if feval is not None:
            if data_idx == 0:
                cur_data = self.train_set
            else:
                cur_data = self.valid_sets[data_idx - 1]
3408
3409
3410
3411
3412
3413
3414
3415
3416
            for eval_function in feval:
                if eval_function is None:
                    continue
                feval_ret = eval_function(self.__inner_predict(data_idx), cur_data)
                if isinstance(feval_ret, list):
                    for eval_name, val, is_higher_better in feval_ret:
                        ret.append((data_name, eval_name, val, is_higher_better))
                else:
                    eval_name, val, is_higher_better = feval_ret
wxchan's avatar
wxchan committed
3417
3418
3419
3420
                    ret.append((data_name, eval_name, val, is_higher_better))
        return ret

    def __inner_predict(self, data_idx):
3421
        """Predict for training and validation dataset."""
wxchan's avatar
wxchan committed
3422
        if data_idx >= self.__num_dataset:
3423
            raise ValueError("Data_idx should be smaller than number of dataset")
wxchan's avatar
wxchan committed
3424
3425
3426
3427
3428
        if self.__inner_predict_buffer[data_idx] is None:
            if data_idx == 0:
                n_preds = self.train_set.num_data() * self.__num_class
            else:
                n_preds = self.valid_sets[data_idx - 1].num_data() * self.__num_class
3429
            self.__inner_predict_buffer[data_idx] = np.zeros(n_preds, dtype=np.float64)
3430
        # avoid to predict many time in one iteration
wxchan's avatar
wxchan committed
3431
3432
        if not self.__is_predicted_cur_iter[data_idx]:
            tmp_out_len = ctypes.c_int64(0)
Guolin Ke's avatar
Guolin Ke committed
3433
            data_ptr = self.__inner_predict_buffer[data_idx].ctypes.data_as(ctypes.POINTER(ctypes.c_double))
wxchan's avatar
wxchan committed
3434
3435
            _safe_call(_LIB.LGBM_BoosterGetPredict(
                self.handle,
Guolin Ke's avatar
Guolin Ke committed
3436
                ctypes.c_int(data_idx),
wxchan's avatar
wxchan committed
3437
3438
3439
                ctypes.byref(tmp_out_len),
                data_ptr))
            if tmp_out_len.value != len(self.__inner_predict_buffer[data_idx]):
3440
                raise ValueError("Wrong length of predict results for data %d" % (data_idx))
wxchan's avatar
wxchan committed
3441
3442
3443
3444
            self.__is_predicted_cur_iter[data_idx] = True
        return self.__inner_predict_buffer[data_idx]

    def __get_eval_info(self):
3445
        """Get inner evaluation count and names."""
wxchan's avatar
wxchan committed
3446
3447
        if self.__need_reload_eval_info:
            self.__need_reload_eval_info = False
Guolin Ke's avatar
Guolin Ke committed
3448
            out_num_eval = ctypes.c_int(0)
3449
            # Get num of inner evals
wxchan's avatar
wxchan committed
3450
3451
3452
3453
3454
            _safe_call(_LIB.LGBM_BoosterGetEvalCounts(
                self.handle,
                ctypes.byref(out_num_eval)))
            self.__num_inner_eval = out_num_eval.value
            if self.__num_inner_eval > 0:
3455
                # Get name of evals
Guolin Ke's avatar
Guolin Ke committed
3456
                tmp_out_len = ctypes.c_int(0)
3457
3458
3459
                reserved_string_buffer_size = 255
                required_string_buffer_size = ctypes.c_size_t(0)
                string_buffers = [
3460
                    ctypes.create_string_buffer(reserved_string_buffer_size) for i in range(self.__num_inner_eval)
3461
                ]
wxchan's avatar
wxchan committed
3462
                ptr_string_buffers = (ctypes.c_char_p * self.__num_inner_eval)(*map(ctypes.addressof, string_buffers))
wxchan's avatar
wxchan committed
3463
3464
                _safe_call(_LIB.LGBM_BoosterGetEvalNames(
                    self.handle,
3465
                    ctypes.c_int(self.__num_inner_eval),
wxchan's avatar
wxchan committed
3466
                    ctypes.byref(tmp_out_len),
3467
                    ctypes.c_size_t(reserved_string_buffer_size),
3468
                    ctypes.byref(required_string_buffer_size),
wxchan's avatar
wxchan committed
3469
3470
                    ptr_string_buffers))
                if self.__num_inner_eval != tmp_out_len.value:
3471
                    raise ValueError("Length of eval names doesn't equal with num_evals")
3472
3473
3474
3475
3476
                if reserved_string_buffer_size < required_string_buffer_size.value:
                    raise BufferError(
                        "Allocated eval name buffer size ({}) was inferior to the needed size ({})."
                        .format(reserved_string_buffer_size, required_string_buffer_size.value)
                    )
3477
                self.__name_inner_eval = \
3478
                    [string_buffers[i].value.decode('utf-8') for i in range(self.__num_inner_eval)]
3479
                self.__higher_better_inner_eval = \
3480
                    [name.startswith(('auc', 'ndcg@', 'map@', 'average_precision')) for name in self.__name_inner_eval]
3481

wxchan's avatar
wxchan committed
3482
    def attr(self, key):
3483
        """Get attribute string from the Booster.
wxchan's avatar
wxchan committed
3484
3485
3486

        Parameters
        ----------
3487
3488
        key : string
            The name of the attribute.
wxchan's avatar
wxchan committed
3489
3490
3491

        Returns
        -------
3492
3493
        value : string or None
            The attribute value.
Nikita Titov's avatar
Nikita Titov committed
3494
            Returns None if attribute does not exist.
wxchan's avatar
wxchan committed
3495
        """
3496
        return self.__attr.get(key, None)
wxchan's avatar
wxchan committed
3497
3498

    def set_attr(self, **kwargs):
3499
        """Set attributes to the Booster.
wxchan's avatar
wxchan committed
3500
3501
3502
3503

        Parameters
        ----------
        **kwargs
3504
3505
            The attributes to set.
            Setting a value to None deletes an attribute.
Nikita Titov's avatar
Nikita Titov committed
3506
3507
3508
3509

        Returns
        -------
        self : Booster
3510
            Booster with set attributes.
wxchan's avatar
wxchan committed
3511
3512
3513
        """
        for key, value in kwargs.items():
            if value is not None:
3514
                if not isinstance(value, str):
Nikita Titov's avatar
Nikita Titov committed
3515
                    raise ValueError("Only string values are accepted")
wxchan's avatar
wxchan committed
3516
3517
3518
                self.__attr[key] = value
            else:
                self.__attr.pop(key, None)
Nikita Titov's avatar
Nikita Titov committed
3519
        return self