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# Example input.yaml for training SevenNet.
# '*' signifies default. You can check log.sevenn for defaults.

model:
    chemical_species: 'Auto'                      # Elements model should know. [ 'Univ' | 'Auto' | manual_user_input ]
    cutoff: 5.0                                   # Cutoff radius in Angstroms. If two atoms are within the cutoff, they are connected.
    channel: 32                                   # The multiplicity(channel) of node features.
    lmax: 2                                       # Maximum order of irreducible representations (rotation order).
    num_convolution_layer: 3                      # The number of message passing layers.

    #irreps_manual:                               # Manually set irreps of the model in each layer
        #- "128x0e"
        #- "128x0e+64x1e+32x2e"
        #- "128x0e+64x1e+32x2e"
        #- "128x0e+64x1e+32x2e"
        #- "128x0e+64x1e+32x2e"
        #- "128x0e"

    weight_nn_hidden_neurons: [64, 64]            # Hidden neurons in convolution weight neural network
    radial_basis:                                 # Function and its parameters to encode radial distance
        radial_basis_name: 'bessel'               # Only 'bessel' is currently supported
        bessel_basis_num: 8

    cutoff_function:                              # Envelop function, multiplied to radial_basis functions to init edge features
        cutoff_function_name: 'poly_cut'          # {'poly_cut' and 'poly_cut_p_value'} or {'XPLOR' and 'cutoff_on'}
        poly_cut_p_value: 6

    act_gate: {'e': 'silu', 'o': 'tanh'}          # Equivalent to 'nonlinearity_gates' in nequip
    act_scalar: {'e': 'silu', 'o': 'tanh'}        # Equivalent to 'nonlinearity_scalars' in nequip

    is_parity: False                              # Pairy True (E(3) group) or False (to SE(3) group)

    self_connection_type: 'nequip'                # Default is 'nequip'. 'linear' is used for SevenNet-0. I recommend 'linear' for 'Univ' chemical_species

    conv_denominator: "avg_num_neigh"             # Valid options are "avg_num_neigh*", "sqrt_avg_num_neigh", or float
    train_denominator: False                      # Enable training for denominator in convolution layer
    train_shift_scale: False                      # Enable training for shift & scale in output layer

train:
    random_seed: 1
    is_train_stress: True                         # Includes stress in the loss function
    epoch: 200                                    # Ends training after this number of epochs

    #loss: 'Huber'                                # Default is 'mse' (mean squared error)
    #loss_param:
        #delta: 0.01

    # Each optimizer and scheduler have different available parameters.
    # You can refer to sevenn/train/optim.py for supporting optimizer & schedulers
    optimizer: 'adam'                             # Options available are 'sgd', 'adagrad', 'adam', 'adamw', 'radam'
    optim_param:
        lr: 0.005
    scheduler: 'exponentiallr'                    # 'steplr', 'multisteplr', 'exponentiallr', 'cosineannealinglr', 'reducelronplateau', 'linearlr'
    scheduler_param:
        gamma: 0.99

    force_loss_weight: 0.1                        # Coefficient for force loss
    stress_loss_weight: 1e-06                     # Coefficient for stress loss (to kbar unit)

    per_epoch: 10                                 # Generate checkpoints every this epoch

    # ['target y', 'metric']
    # Target y: TotalEnergy, Energy, Force, Stress, Stress_GPa, TotalLoss
    # Metric  : RMSE, MAE, or Loss
    error_record:
        - ['Energy', 'RMSE']
        - ['Force', 'RMSE']
        - ['Stress', 'RMSE']
        - ['TotalLoss', 'None']

    # Continue training model from given checkpoint, or pre-trained model checkpoint for fine-tuning
    #continue:
        #checkpoint: 'checkpoint_best.pth'         # Checkpoint of pre-trained model or a model want to continue training.
        #reset_optimizer: False                    # Set True for fine-tuning
        #reset_scheduler: False                    # Set True for fine-tuning

data:
    batch_size: 4                                 # Per GPU batch size.
    data_divide_ratio: 0.1                        # Split dataset into training and validation sets by this ratio

    shift: 'per_atom_energy_mean'                 # One of 'per_atom_energy_mean*', 'elemwise_reference_energies', float
    scale: 'force_rms'                            # One of 'force_rms*', 'per_atom_energy_std', float

    # SevenNet automatically matches data format from its filename.
    # For those not `structure_list` or `.pt` files, assumes it is ASE readable
    # In this case, below arguments are directly passed to `ase.io.read`
    data_format_args:
        index: ':'                                # see `https://wiki.fysik.dtu.dk/ase/ase/io/io.html` for more valid arguments

    # validset is needed if you want '_best.pth' during training. If not, both validset and testset is optional.
    load_trainset_path: ['./structure_list']  # Example of using ase as data_format, support multiple files and expansion(*)
    #load_validset_path: ['./valid.extxyz']
    #load_testset_path:  ['./sevenn_data/mydata.pt']  # Graph can be preprocessed using `sevenn_graph_build` and accessible like this