update readme

README.md

@@ -19,14 +19,16 @@ Uni-Fold,参考https://github.com/dptech-corp/Uni-Fold
 
 示例中验证的数据集来自：
 
+```
 bash scripts/download/download_all_data.sh /path/to/database/directory
+```
 
 ## 预训练模型参数
-
+```
 wget https://github.com/dptech-corp/Uni-Fold/releases/download/v2.0.0/unifold_params_2022-08-01.tar.gz
 
 tar -zxf unifold_params_2022-08-01.tar.gz
-
+```
 ## 推理
 
 ### 环境配置
@@ -34,15 +36,15 @@ tar -zxf unifold_params_2022-08-01.tar.gz
 提供[光源](https://www.sourcefind.cn/#/service-details)拉取的训练的docker镜像：
 
 * 推理镜像：
-
+```
 docker pull image.sourcefind.cn:5000/dcu/admin/base/custom:unifold-latest
 
 cd /root/Uni-Fold-main
-
+```
 * 依赖安装：(如使用镜像，则无需再次安装)
 
 安装requirement.txt中的工具，镜像中已经安装好,加载方式
-
+```
 export PATH=/root/software/hmmer/bin${PATH:+:${PATH}}
 
 export PATH=/root/software/hh-suite-master/bin${PATH:+:${PATH}}
@@ -50,33 +52,29 @@ export PATH=/root/software/hh-suite-master/bin${PATH:+:${PATH}}
 export PATH=/root/software/kalign/bin${PATH:+:${PATH}}
 
 export LD_LIBRARY_PATH=/root/software/hh-suite-master/lib${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}
-
+```
 ### 安装
 #### 安装Uni-Core-main(如使用镜像，则无需再次安装)
-
+```
 cd Uni-Core-main
 
 export CUDA_HOME=/opt/dtk-22.04.2
 
 python3 setup.py install
-
+```
 #### 安装Uni-Fold-main(如使用镜像，则无需再次安装)
-
+```
 pip install -e .
-
+```
 ### 单卡测试
 #### 多聚体参考脚本,需要根据实际情况修改路径配置
-
+```
 sh run_multimer.sh 
-
+```
 #### 单聚体参考脚本,需要根据实际情况修改路径配置
-
+```
 sh run_monomer.sh
-
-### 准确率验证
-
-参考https://zhanggroup.org/TM-score/
-
+```
 ## 历史版本
 * https://developer.hpccube.com/codes/modelzoo/uni-fold