batch_reader.py

# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ==============================================================================

"""Batch reader to seq2seq attention model, with bucketing support."""

from collections import namedtuple
from random import shuffle
from threading import Thread
import time

import numpy as np
from six.moves import queue as Queue
from six.moves import xrange
import tensorflow as tf

import data

ModelInput = namedtuple('ModelInput',
                        'enc_input dec_input target enc_len dec_len '
                        'origin_article origin_abstract')

BUCKET_CACHE_BATCH = 100
QUEUE_NUM_BATCH = 100


class Batcher(object):
  """Batch reader with shuffling and bucketing support."""

  def __init__(self, data_path, vocab, hps,
               article_key, abstract_key, max_article_sentences,
               max_abstract_sentences, bucketing=True, truncate_input=False):
    """Batcher constructor.

    Args:
      data_path: tf.Example filepattern.
      vocab: Vocabulary.
      hps: Seq2SeqAttention model hyperparameters.
      article_key: article feature key in tf.Example.
      abstract_key: abstract feature key in tf.Example.
      max_article_sentences: Max number of sentences used from article.
      max_abstract_sentences: Max number of sentences used from abstract.
      bucketing: Whether bucket articles of similar length into the same batch.
      truncate_input: Whether to truncate input that is too long. Alternative is
        to discard such examples.
    """
    self._data_path = data_path
    self._vocab = vocab
    self._hps = hps
    self._article_key = article_key
    self._abstract_key = abstract_key
    self._max_article_sentences = max_article_sentences
    self._max_abstract_sentences = max_abstract_sentences
    self._bucketing = bucketing
    self._truncate_input = truncate_input
    self._input_queue = Queue.Queue(QUEUE_NUM_BATCH * self._hps.batch_size)
    self._bucket_input_queue = Queue.Queue(QUEUE_NUM_BATCH)
    self._input_threads = []
    for _ in xrange(16):
      self._input_threads.append(Thread(target=self._FillInputQueue))
      self._input_threads[-1].daemon = True
      self._input_threads[-1].start()
    self._bucketing_threads = []
    for _ in xrange(4):
      self._bucketing_threads.append(Thread(target=self._FillBucketInputQueue))
      self._bucketing_threads[-1].daemon = True
      self._bucketing_threads[-1].start()

    self._watch_thread = Thread(target=self._WatchThreads)
    self._watch_thread.daemon = True
    self._watch_thread.start()

  def NextBatch(self):
    """Returns a batch of inputs for seq2seq attention model.

    Returns:
      enc_batch: A batch of encoder inputs [batch_size, hps.enc_timestamps].
      dec_batch: A batch of decoder inputs [batch_size, hps.dec_timestamps].
      target_batch: A batch of targets [batch_size, hps.dec_timestamps].
      enc_input_len: encoder input lengths of the batch.
      dec_input_len: decoder input lengths of the batch.
      loss_weights: weights for loss function, 1 if not padded, 0 if padded.
      origin_articles: original article words.
      origin_abstracts: original abstract words.
    """
    enc_batch = np.zeros(
        (self._hps.batch_size, self._hps.enc_timesteps), dtype=np.int32)
    enc_input_lens = np.zeros(
        (self._hps.batch_size), dtype=np.int32)
    dec_batch = np.zeros(
        (self._hps.batch_size, self._hps.dec_timesteps), dtype=np.int32)
    dec_output_lens = np.zeros(
        (self._hps.batch_size), dtype=np.int32)
    target_batch = np.zeros(
        (self._hps.batch_size, self._hps.dec_timesteps), dtype=np.int32)
    loss_weights = np.zeros(
        (self._hps.batch_size, self._hps.dec_timesteps), dtype=np.float32)
    origin_articles = ['None'] * self._hps.batch_size
    origin_abstracts = ['None'] * self._hps.batch_size

    buckets = self._bucket_input_queue.get()
    for i in xrange(self._hps.batch_size):
      (enc_inputs, dec_inputs, targets, enc_input_len, dec_output_len,
       article, abstract) = buckets[i]

      origin_articles[i] = article
      origin_abstracts[i] = abstract
      enc_input_lens[i] = enc_input_len
      dec_output_lens[i] = dec_output_len
      enc_batch[i, :] = enc_inputs[:]
      dec_batch[i, :] = dec_inputs[:]
      target_batch[i, :] = targets[:]
      for j in xrange(dec_output_len):
        loss_weights[i][j] = 1
    return (enc_batch, dec_batch, target_batch, enc_input_lens, dec_output_lens,
            loss_weights, origin_articles, origin_abstracts)

  def _FillInputQueue(self):
    """Fill input queue with ModelInput."""
    start_id = self._vocab.WordToId(data.SENTENCE_START)
    end_id = self._vocab.WordToId(data.SENTENCE_END)
    pad_id = self._vocab.WordToId(data.PAD_TOKEN)
    input_gen = self._TextGenerator(data.ExampleGen(self._data_path))
    while True:
      (article, abstract) = input_gen.next()
      article_sentences = [sent.strip() for sent in
                           data.ToSentences(article, include_token=False)]
      abstract_sentences = [sent.strip() for sent in
                            data.ToSentences(abstract, include_token=False)]

      enc_inputs = []
      # Use the <s> as the <GO> symbol for decoder inputs.
      dec_inputs = [start_id]

      # Convert first N sentences to word IDs, stripping existing <s> and </s>.
      for i in xrange(min(self._max_article_sentences,
                          len(article_sentences))):
        enc_inputs += data.GetWordIds(article_sentences[i], self._vocab)
      for i in xrange(min(self._max_abstract_sentences,
                          len(abstract_sentences))):
        dec_inputs += data.GetWordIds(abstract_sentences[i], self._vocab)

      # Filter out too-short input
      if (len(enc_inputs) < self._hps.min_input_len or
          len(dec_inputs) < self._hps.min_input_len):
        tf.logging.warning('Drop an example - too short.\nenc:%d\ndec:%d',
                           len(enc_inputs), len(dec_inputs))
        continue

      # If we're not truncating input, throw out too-long input
      if not self._truncate_input:
        if (len(enc_inputs) > self._hps.enc_timesteps or
            len(dec_inputs) > self._hps.dec_timesteps):
          tf.logging.warning('Drop an example - too long.\nenc:%d\ndec:%d',
                             len(enc_inputs), len(dec_inputs))
          continue
      # If we are truncating input, do so if necessary
      else:
        if len(enc_inputs) > self._hps.enc_timesteps:
          enc_inputs = enc_inputs[:self._hps.enc_timesteps]
        if len(dec_inputs) > self._hps.dec_timesteps:
          dec_inputs = dec_inputs[:self._hps.dec_timesteps]

      # targets is dec_inputs without <s> at beginning, plus </s> at end
      targets = dec_inputs[1:]
      targets.append(end_id)

      # Now len(enc_inputs) should be <= enc_timesteps, and
      # len(targets) = len(dec_inputs) should be <= dec_timesteps

      enc_input_len = len(enc_inputs)
      dec_output_len = len(targets)

      # Pad if necessary
      while len(enc_inputs) < self._hps.enc_timesteps:
        enc_inputs.append(pad_id)
      while len(dec_inputs) < self._hps.dec_timesteps:
        dec_inputs.append(end_id)
      while len(targets) < self._hps.dec_timesteps:
        targets.append(end_id)

      element = ModelInput(enc_inputs, dec_inputs, targets, enc_input_len,
                           dec_output_len, ' '.join(article_sentences),
                           ' '.join(abstract_sentences))
      self._input_queue.put(element)

  def _FillBucketInputQueue(self):
    """Fill bucketed batches into the bucket_input_queue."""
    while True:
      inputs = []
      for _ in xrange(self._hps.batch_size * BUCKET_CACHE_BATCH):
        inputs.append(self._input_queue.get())
      if self._bucketing:
        inputs = sorted(inputs, key=lambda inp: inp.enc_len)

      batches = []
      for i in xrange(0, len(inputs), self._hps.batch_size):
        batches.append(inputs[i:i+self._hps.batch_size])
      shuffle(batches)
      for b in batches:
        self._bucket_input_queue.put(b)

  def _WatchThreads(self):
    """Watch the daemon input threads and restart if dead."""
    while True:
      time.sleep(60)
      input_threads = []
      for t in self._input_threads:
        if t.is_alive():
          input_threads.append(t)
        else:
          tf.logging.error('Found input thread dead.')
          new_t = Thread(target=self._FillInputQueue)
          input_threads.append(new_t)
          input_threads[-1].daemon = True
          input_threads[-1].start()
      self._input_threads = input_threads

      bucketing_threads = []
      for t in self._bucketing_threads:
        if t.is_alive():
          bucketing_threads.append(t)
        else:
          tf.logging.error('Found bucketing thread dead.')
          new_t = Thread(target=self._FillBucketInputQueue)
          bucketing_threads.append(new_t)
          bucketing_threads[-1].daemon = True
          bucketing_threads[-1].start()
      self._bucketing_threads = bucketing_threads

  def _TextGenerator(self, example_gen):
    """Generates article and abstract text from tf.Example."""
    while True:
      e = example_gen.next()
      try:
        article_text = self._GetExFeatureText(e, self._article_key)
        abstract_text = self._GetExFeatureText(e, self._abstract_key)
      except ValueError:
        tf.logging.error('Failed to get article or abstract from example')
        continue

      yield (article_text, abstract_text)

  def _GetExFeatureText(self, ex, key):
    """Extract text for a feature from td.Example.

    Args:
      ex: tf.Example.
      key: key of the feature to be extracted.
    Returns:
      feature: a feature text extracted.
    """
    return ex.features.feature[key].bytes_list.value[0]