Commit 617733d0 authored by yuhai's avatar yuhai
Browse files

Update README.md

parent a7f63ab6
......@@ -25,18 +25,18 @@ docker pull image.sourcefind.cn:5000/dcu/admin/base/custom:proteinmpnn-dtk-22.10
# <Image ID>用上面拉取docker镜像的ID替换
# <Host Path>主机端路径
# <Container Path>容器映射路径
docker run -it --name proteinmpnn --shm-size=32G --device=/dev/kfd --device=/dev/dri/ --cap-add=SYS_PTRACE --security-opt seccomp=unconfined --ulimit memlock=-1:-1 --ipc=host --network host --group-add video -v <Host Path>:<Container Path> <Image ID> /bin/bash
docker run -it --name proteinmpnn --shm-size=32G --device=/dev/kfd --device=/dev/dri/ --cap-add=SYS_PTRACE --security-opt seccomp=unconfined --ulimit memlock=-1:-1 --ipc=host --network host --group-add video -v /opt/hyhal:/opt/hyhal:ro -v <Host Path>:<Container Path> <Image ID> /bin/bash
```
镜像版本依赖:
* DTK驱动:dtk22.10
* Pytorch: 1.10
* Torchvision >= 1.10.0
* Torchaudio >= 1.10.0
* python: python3.7
* DTK驱动:dtk24.04.2
* Pytorch: 2.3.0
* Torchvision >= 0.18.1
* Torchaudio >= 2.1.2
* python: python3.10
激活镜像环境:
`source /opt/dtk-22.10/env.sh`
`source /opt/dtk-24.04.2/env.sh`
测试目录:
`/opt/ProteinMPNN-main`
......@@ -108,15 +108,15 @@ outputs/
```
## 精度
测试数据:`/opt/ProteinMPNN-main/inputs`,使用的加速卡:1张 DCU Z100L-32G
测试数据:`/opt/ProteinMPNN-main/inputs`,使用的加速卡:1张 DCU K100_AI-64G
准确率数据:
| batch size | 数据类型 | 序列类型 | 序列标签 | 序列长度 | Sequence recovery(%) |
| :------: | :------: | :------: |:------: |:------: |:------: |
| 1 | fp32 | 单体 | 5L33 | 106 | 39.6 |
| 1 | fp32 | 单体 | 6MRR | 68 | 39.7 |
| 1 | fp32 | 多体 | 3HTN | 429 | 55.7 |
| 1 | fp32 | 多体 | 4YOW | 693 | 57.7 |
| 1 | fp32 | 单体 | 5L33 | 106 | 46.23 |
| 1 | fp32 | 单体 | 6MRR | 68 | 57.35 |
| 1 | fp32 | 多体 | 3HTN | 429 | 61.35 |
| 1 | fp32 | 多体 | 4YOW | 693 | 64.32 |
## 应用场景
......
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