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Apache License
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\ No newline at end of file
README.md
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......@@ -67,15 +67,14 @@ Tips：以上dtk驱动、torch等工具版本需要严格一一对应。
pip install -r requirements.txt -i http://mirrors.aliyun.com/pypi/simple/ --trusted-host mirrors.aliyun.com
```
# 下载
# 数据集
## 安装git-lfs
```
sudo apt-get update
sudo apt-get install git-lfs
```
数据集[Geneformer](http://113.200.138.88:18080/aimodels/ctheodoris/Geneformer.git)下载
## 数据集下载
```
......@@ -85,9 +84,15 @@ cd /path/to
git lfs clone http://113.200.138.88:18080/aimodels/ctheodoris/Geneformer.git
```
# 模型训练
## geneformer模型下载
模型下载以及安装geneformer
模型[Geneformer](http://113.200.138.88:18080/aimodels/ctheodoris/Geneformer.git)下载以及安装geneformer
```
cd /path/to
......@@ -96,17 +101,16 @@ cd Geneformer
pip install -e .
```
# 模型训练
单卡运行 gene classification
## 单卡运行 gene classification
```
cd geneformer/
python train_cell.py
```
详情可以参考 Geneformer/examples/cell_classification.ipynb
## result
![Alt text](./media/image5.png)
......@@ -114,18 +118,26 @@ python train_cell.py
暂无
# 应用场景
## 算法类别
ai for science
# 行业
科研
# 热点应用行业
科研 基因预测 医疗
# 源码仓库及问题反馈
```
http://developer.sourcefind.cn/codes/modelzoo/geneformer.git
```
# 参考资料
```
https://hf-mirror.com/ctheodoris/Geneformer
```
......
model.properties 0 → 100644
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# 模型唯一标识
modelCode=1020
# 模型名称
modelName=Geneformer_pytorch
# 模型描述
modelDescription=基于pytorch的geneformer
# 应用场景
appScenario=医疗,教育,科研
# 框架类型
frameType=Pytorch
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