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ModelZoo
Geneformer_pytorch
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4be13c7a
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4be13c7a
authored
Sep 30, 2024
by
wangsen
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update readme.md
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4be13c7a
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@@ -100,7 +100,7 @@ git clone https://hf-mirror.com/datasets/ctheodoris/Genecorpus-30M
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@@ -100,7 +100,7 @@ git clone https://hf-mirror.com/datasets/ctheodoris/Genecorpus-30M
cd /path/to
cd /path/to
git clone -b pr146_branch https://hf-mirror.com/ctheodoris/Geneformer
git clone -b pr146_branch https://hf-mirror.com/ctheodoris/Geneformer
cd Geneformer
cd Geneformer
p
ython
install -e .
p
ip
install -e .
```
```
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@@ -112,15 +112,10 @@ python install -e .
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@@ -112,15 +112,10 @@ python install -e .
单卡运行 gene classification
单卡运行 gene classification
```
```
cd geneformer/
cd geneformer/
python train.py
python train
_cell
.py
```
```
详情可以参考 Geneformer/examples/cell_classification.ipynb
详情可以参考 Geneformer/examples/cell_classification.ipynb
```
python train_cell.py # 替换py文件中dataset的路径
```
# 参考
# 参考
https://hf-mirror.com/ctheodoris/Geneformer
https://hf-mirror.com/ctheodoris/Geneformer
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