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ModelZoo
FastFold_pytorch
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171dff09
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171dff09
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Apr 21, 2023
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zhuwenwen
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@@ -90,28 +90,6 @@ Alphafold的数据预处理需要花费大量时间,因此我们通过[ray](ht
##### 多体推理参数说明
SUGP1.fasta为推理的多体序列;--param_path为加载多体模型路径,需要和--model_name保持一致,其他参数同单体推理参数说明一致。
## 性能和准确率数据
测试数据:
[
casp14
](
https://www.predictioncenter.org/casp14/targetlist.cgi
)
、
[
uniprot
](
https://www.uniprot.org/
)
,使用的加速卡:4张 DCU 1代-16G
性能数据:
| 数据类型 | 序列类型 | 序列标签 | 序列长度 | Speed(s) |
| :------: | :------: | :------: | :------: |:------: |
| fp32 | 单体 | T1024 | 408 | 80 |
| fp32 | 单体 | Q9NYK1 | 1046 | 488 |
| fp32 | 单体 | Q8CHI8 | 3072 | 8718 |
| fp32 | 多体 | H1036 | 856 | 324 |
| fp32 | 多体 | H1060 | 1106 | 449 |
| fp32 | 多体 | 6h3c | 2030 | 2142 |
准确性数据:
| 数据类型 | 序列类型 | 序列标签 | 序列长度 | GDT-TS | GDT-HA | LDDT | TM score | MaxSub | RMSD |
| :------: | :------: | :------: | :------: |:------: |:------: | :------: | :------: | :------: |:------: |
| fp32 | 单体 | T1026 | 172 | 0.914 | 0.765 | 79.634 | 0.941 | 0.907 | 1.289 |
| fp32 | 单体 | T1053 | 580 | 0.937 | 0.782 | 92.284 | 0.984 | 0.929 | 1.105 |
| fp32 | 单体 | Q9NYK1 | 1046 | 0.907 | 0.744 | 86.642 | 0.962 | 0.905 | 5.757 |
## 历史版本
*
https://developer.hpccube.com/codes/modelzoo/FastFold
## 参考
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