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ModelZoo
CIRI-deep_tensorflow
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0c3c0154
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Jul 26, 2023
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adaZ-9
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Jul 26, 2023
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# CIRIdeep
# CIRI-deep
-
CIRIdeep is a deep-learning model used to predict differentially spliced circRNAs between two biological samples using totalRNA sequencing data.
-
CIRI-deep is a deep-learning model used to predict differentially spliced circRNAs between two biological samples using totalRNA sequencing data.
-
An adapted version of CIRIdeep, CIRIdeepA, was trained for poly(A) selected RNA-seq data.
-
An adapted version of CIRI-deep, CIRI-deepA, was trained for poly(A) selected RNA-seq data.
# Installation
The CIRI-deep model was constructed based on Keras. The
`requirements.txt`
was provided and the dependencies can be installed as the follow:
```
git clone https://github.com/gyjames/CIRIdeep.git
cd CIRIdeep
conda env create --name CIRIdeep --file ./requirements.txt
```
# Usage
# Usage
The main program
`CIRIdeep.py`
can be used to predict differentially spliced circRNAs with CIRIdeep or CIRIdeep(A) or train your own model.
The main program
`CIRIdeep.py`
can be used to predict differentially spliced circRNAs with CIRIdeep or CIRIdeep(A) or train your own model.
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