Commits · e1d2d53af8619247411a9ac445856cebb8da8a40 · ModelZoo / alphafold2_jax

20 Mar, 2023 1 commit

Hamish Tomlinson authored Mar 20, 2023

PiperOrigin-RevId: 517987165
Change-Id: I6fbb517b9991a9b0bb83bfd612f2c5158067d60f

e1d2d53a

10 Mar, 2023 1 commit

Bump Python in Colab to 3.9. · 2e6a78f0

Augustin Zidek authored Mar 10, 2023

PiperOrigin-RevId: 515639889
Change-Id: If06429d31e0b82986436d747bf05ef95f8ec91fb

2e6a78f0

06 Mar, 2023 1 commit
- Turn off bfloat16 in colab. · 651fe8cd
  Hamish Tomlinson authored Mar 06, 2023
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PiperOrigin-RevId: 514446997
Change-Id: I8b1113d39b62f7124d301e40c4b2e4418618bb7c
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  651fe8cd
09 Feb, 2023 1 commit
- Add cell execution order error checking. · 502d7a19
  Hamish Tomlinson authored Feb 09, 2023
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Change-Id: I1d976ac08808e4356f89c29428668c1093816056
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  502d7a19
12 Jan, 2023 1 commit
- Use shutil to zip and download colab outputs · 0d9a24b2
  Hamish Tomlinson authored Jan 12, 2023
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PiperOrigin-RevId: 501595938
Change-Id: Ib586090d13279eca1371f0e0b046379b728a3e87
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  0d9a24b2
11 Jan, 2023 1 commit

Bump version to 2.3.1 · d6d2fc07

Hamish Tomlinson authored Jan 11, 2023

PiperOrigin-RevId: 501297397
Change-Id: Ic1bb166581047e0e8c46845f41f8c55c10f32ef9

d6d2fc07

20 Dec, 2022 1 commit
- Speed up Colab multimer MSA search: fetch each db chunk only once and run all queries against it. · 4b726a2e
  Augustin Zidek authored Dec 20, 2022
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PiperOrigin-RevId: 496636186
Change-Id: I0a428b6269f8e1bcb1a6efb33cad2fc70b0d1f35
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  4b726a2e
15 Dec, 2022 1 commit
- Restore the max sequence limit to 4000 now that unified memory is fixed. · e80e2524
  Andrew Cowie authored Dec 15, 2022
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PiperOrigin-RevId: 495602713
Change-Id: I091644565b3bbb2e95ee434c6cd80d6d54d677dc
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  e80e2524
13 Dec, 2022 1 commit
- Set environment variables before any other code is executed. · a0b0cd9c
  Andrew Cowie authored Dec 13, 2022
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Change-Id: I3b1a6ddceca1961bffdaba443e7db47bbfbc4fad
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  a0b0cd9c
11 Dec, 2022 1 commit
- Release code for v2.3.0 · 9b18d6a9
  Augustin Zidek authored Dec 11, 2022
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PiperOrigin-RevId: 494507694
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  9b18d6a9
01 Dec, 2022 1 commit
- Bump python in colab to 3.8 · 4494af84
  Hamish Tomlinson authored Dec 01, 2022
  
  4494af84
12 Oct, 2022 1 commit

Update version in colab · ff4f1c61

Hamish Tomlinson authored Oct 12, 2022

PiperOrigin-RevId: 480643781
Change-Id: Id4bfa90b71cd59b148a3c2a61ddb65c41192712b

ff4f1c61

31 Aug, 2022 1 commit
- Make using GPU in relaxation optional, with default not to use. · 2eb6c0cc
  Hamish Tomlinson authored Aug 31, 2022
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PiperOrigin-RevId: 471264036
Change-Id: Ic2201048f5c9d9d741cb20fdf46f2f27986587f4
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  2eb6c0cc
25 Aug, 2022 1 commit

Pin Conda version to 4.13.0. · dad1f286

Augustin Zidek authored Aug 25, 2022

PiperOrigin-RevId: 469937063
Change-Id: I24ebf6e1afc9e6f64200ee195ff708be27edb327

dad1f286

12 Aug, 2022 1 commit
- Changed PAE json output to new format that matches the format used in AFDB. · 6f6e8c2e
  DeepMind authored Aug 12, 2022
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  6f6e8c2e
16 Mar, 2022 1 commit
- Add info for getting in touch via email to colab and readme. · 8cdec539
  Alex Bridgland authored Mar 16, 2022
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PiperOrigin-RevId: 435031203
Change-Id: Ib3fdb9931219f3a139b324e751914a00f425fe2c
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  8cdec539
03 Mar, 2022 1 commit
- Update multimer models to v2. · eba82a65
  Sebastian Bodenstein authored Mar 03, 2022
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  eba82a65
18 Feb, 2022 1 commit
- Remove prokaryotic pairing from AFOS. · 89a6875f
  Rich Evans authored Feb 18, 2022
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  89a6875f
27 Jan, 2022 1 commit
- Release code for v2.1.2 · 57a2455e
  Augustin Zidek authored Jan 27, 2022
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  57a2455e
19 Jan, 2022 1 commit
- Update license of AlphaFold parameters. · 81731171
  Augustin-Zidek authored Jan 19, 2022
  
  81731171
05 Nov, 2021 1 commit
- Fix PAE visualization for single chain predictions. · 91b43223
  Rich Evans authored Nov 05, 2021
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PiperOrigin-RevId: 407773747
Change-Id: I8635dd77ecf366f4f5a362993b964adffc3ff186
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  91b43223
02 Nov, 2021 1 commit
- Add code for AlphaFold-Multimer. · 0be2b30b
  Augustin-Zidek authored Nov 02, 2021
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  0be2b30b
25 Aug, 2021 1 commit
- Fix TensorFlow versions in AlphaFold Colab notebook. · b1d772d1
  DeepMind authored Aug 25, 2021
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PiperOrigin-RevId: 392861510
Change-Id: I266255479210e5c9b6cbc02977f4024d40c5b94d
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  b1d772d1
13 Aug, 2021 1 commit
- Set versions of libraries AlphaFold Colab notebook depends on. · f65e94fc
  Augustin Zidek authored Aug 13, 2021
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PiperOrigin-RevId: 390553964
Change-Id: Ia5bc6e12ab3f1a7827b7d914c93f6990a1139780
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  f65e94fc
22 Jul, 2021 1 commit
- Add a Colab notebook, add reduced BFD, and various other fixes and improvements. · 0bab1bf8
  Saran Tunyasuvunakool authored Jul 22, 2021
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  0bab1bf8