Commits · 9b18d6a966b9b08b2095dd77d8414a68d3d31fc9 · ModelZoo / alphafold2_jax

11 Dec, 2022 1 commit
- Release code for v2.3.0 · 9b18d6a9
  Augustin Zidek authored Dec 11, 2022
```
PiperOrigin-RevId: 494507694
```
  9b18d6a9
26 Nov, 2022 1 commit
- Updated Jax to 0.3.25 and Haiku to 0.0.9 · 8537f51d
  Hamish Tomlinson authored Nov 26, 2022
  
  8537f51d
16 Sep, 2022 2 commits
- Reduce size of docker image by cleaning apt, conda and pip caches · 54c73580
  Hamish Tomlinson authored Sep 16, 2022
```
PiperOrigin-RevId: 474805792
Change-Id: I103efb2884b056ddb397b424fce8488b04f00348
```
  54c73580
- Update Jax and Haiku versions · 5e702ce1
  Hamish Tomlinson authored Sep 16, 2022
```
PiperOrigin-RevId: 474776295
Change-Id: I8f5add84f45069f2c48ac905801a611cb298b319
```
  5e702ce1
25 Aug, 2022 1 commit

Augustin Zidek authored Aug 25, 2022

PiperOrigin-RevId: 469937063
Change-Id: I24ebf6e1afc9e6f64200ee195ff708be27edb327

dad1f286

20 Jun, 2022 1 commit
- Fix Dockerfile breakage due to google/jax#11142. · 624a4496
  Tim Green authored Jun 20, 2022
```
PiperOrigin-RevId: 456029742
Change-Id: I908c5fe07d14168d65fccc3e42cb5c994200b0e2
```
  624a4496
14 Jun, 2022 1 commit

Remove unneeded `__init__.py` · 253d1fea

Tom Ward authored Jun 14, 2022

PiperOrigin-RevId: 454823637
Change-Id: Ia7a4361b9d2a6bfe5f93542db76fb9ac1797d903

253d1fea

13 Jun, 2022 1 commit
- Replace period with hyphens in place, instead of declaring environment variable. · ab105145
  Tom Ward authored Jun 13, 2022
```
PiperOrigin-RevId: 454618760
Change-Id: Ia6501f62ff3769a591497ac3413dc7526b31d1cc
```
  ab105145
31 May, 2022 1 commit
- Add support for CUDA patch versions. · 55c948c1
  Tom Ward authored May 31, 2022
```
PiperOrigin-RevId: 452008235
Change-Id: Ic6ae00a207d3b0eb809b039b5df9e7bebdaee558
```
  55c948c1
02 Mar, 2022 1 commit

No longer use `runtime=nvidia` to expose GPUs to the container. · 5f37a5a2

Tom Ward authored Mar 02, 2022

Instead use `DeviceRequest`, which is equivalent to running with `--gpu all`.

PiperOrigin-RevId: 431933575
Change-Id: Iee9f70ae8f291d16850e4f58349559d9468ef4d8

5f37a5a2

23 Feb, 2022 1 commit

Simplify mounting of files. · 552586eb

Andrew Cowie authored Feb 23, 2022

PiperOrigin-RevId: 430450270
Change-Id: Ie9f30b253d1cabf6b20e596732b9bab4963dc776

552586eb

18 Feb, 2022 1 commit
- Remove prokaryotic pairing from AFOS. · 89a6875f
  Rich Evans authored Feb 18, 2022
```
PiperOrigin-RevId: 429521382
Change-Id: Ib9bfce50834bb129af0dbd3508cd0b92856a9bb1
```
  89a6875f
17 Feb, 2022 1 commit
- Enable multiple seeds per model for AlphaFold-Multimer. · eb49d157
  Rich Evans authored Feb 17, 2022
```
PiperOrigin-RevId: 429318717
Change-Id: Ib07df7ecd4bc52feea80a66c585ce51f332ac7a1
```
  eb49d157
27 Jan, 2022 1 commit
- Release code for v2.1.2 · 57a2455e
  Augustin Zidek authored Jan 27, 2022
```
PiperOrigin-RevId: 424591903
```
  57a2455e
05 Nov, 2021 1 commit

Explain better how to run the AlphaFold-Multimer system. · be37a41d

Augustin Zidek authored Nov 05, 2021

* Remove a confusing example that folds multiple complexes at once.
* Add examples on how to create the multimer input FASTA files.
* Add a note about the `model_preset` flag to the API changes.

PiperOrigin-RevId: 407774039
Change-Id: I80277c47febc977ba3956d0615944e62b0d5c3fc

be37a41d

02 Nov, 2021 1 commit
- Add code for AlphaFold-Multimer. · 0be2b30b
  Augustin-Zidek authored Nov 02, 2021
```
PiperOrigin-RevId: 407076987
```
  0be2b30b
02 Aug, 2021 1 commit

Fix a few typos. · 41232dc7

Augustin Zidek authored Aug 02, 2021

PiperOrigin-RevId: 388172326
Change-Id: I11d9e498c226cd752947feb51b7d1eb343b4d7ab

41232dc7

30 Jul, 2021 1 commit

Use Ubuntu 18.04 LTS image. · c9ffb0bc

Tim Green authored Jul 30, 2021

PiperOrigin-RevId: 387763552
Change-Id: I2a9753dfca2853de7f5c07c17cc7b2f7d12cf197

c9ffb0bc

27 Jul, 2021 2 commits
- Collapse hh-suite install steps into single layer. · c9e6fedb
  Tom Ward authored Jul 27, 2021
```
PiperOrigin-RevId: 387060806
Change-Id: Ifa71ce119182ed79a379e57946b2b694e134ef14
```
  c9e6fedb
- Switch to using cudnn base image. · acf25fc8
  DeepMind authored Jul 27, 2021
```
PiperOrigin-RevId: 387058301
Change-Id: If7d2716bfe89228e9fb8f909b72c425bd89f1f7f
```
  acf25fc8
26 Jul, 2021 1 commit

Correct mgnify clusters filename. · 20a70577

DeepMind authored Jul 26, 2021

PiperOrigin-RevId: 386841647
Change-Id: Ie3ad390fc4b53b839f15c01f3b24bd25c77578b6

20a70577

22 Jul, 2021 1 commit
- Add a Colab notebook, add reduced BFD, and various other fixes and improvements. · 0bab1bf8
  Saran Tunyasuvunakool authored Jul 22, 2021
```
PiperOrigin-RevId: 386228948
```
  0bab1bf8
15 Jul, 2021 1 commit
- Initial release of AlphaFold. · 1109480e
  Augustin-Zidek authored Jul 15, 2021
```
PiperOrigin-RevId: 384954738
```
  1109480e