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ModelZoo
alphafold2_jax
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a843db6e
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a843db6e
authored
Aug 29, 2024
by
mashun1
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Update README.md
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README.md
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a843db6e
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@@ -135,13 +135,13 @@ $DOWNLOAD_DIR/
### 单体
```
bash
./
run_monomer.sh
bash
run_monomer.sh
```
单体推理参数说明:download_dir为数据集下载目录,monomer.fasta为推理的单体序列;
`--output_dir`
为输出目录;
`model_names`
为推理的模型名称,
`--model_preset=monomer`
为单体模型配置;
`--run_relax=true`
为进行relax操作;
`--use_gpu_relax=true`
为使用gpu进行relax操作(速度更快,但可能不太稳定),
`--use_gpu_relax=false`
为使用CPU进行relax操作(速度慢,但稳定);若添加--use_precomputed_msas=true则可以加载已有的MSAs,否则默认运行MSA工具。
### 多体
```
bash
./
run_multimer.sh
bash
run_multimer.sh
```
多体推理参数说明:multimer.fasta为推理的多体序列,
`--model_preset=multimer`
为多体模型配置;
`--num_multimer_predictions_per_model`
为每个模型预测数量,其他参数同单体推理参数说明一致。
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