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ModelZoo
alphafold2_jax
Commits
8537f51d
Commit
8537f51d
authored
Nov 26, 2022
by
Hamish Tomlinson
Browse files
Updated Jax to 0.3.25 and Haiku to 0.0.9
parent
b8accc68
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docker/Dockerfile
docker/Dockerfile
+2
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requirements.txt
requirements.txt
+2
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docker/Dockerfile
View file @
8537f51d
...
...
@@ -70,8 +70,8 @@ RUN wget -q -P /app/alphafold/alphafold/common/ \
RUN
pip3
install
--upgrade
pip
--no-cache-dir
\
&&
pip3
install
-r
/app/alphafold/requirements.txt
--no-cache-dir
\
&&
pip3
install
--upgrade
--no-cache-dir
\
jax
==
0.3.
17
\
jaxlib
==
0.3.
1
5+cuda11.cudnn805
\
jax
==
0.3.
25
\
jaxlib
==
0.3.
2
5+cuda11.cudnn805
\
-f
https://storage.googleapis.com/jax-releases/jax_cuda_releases.html
# Apply OpenMM patch.
...
...
requirements.txt
View file @
8537f51d
absl-py
==1.0.0
biopython
==1.79
chex
==0.0.7
dm-haiku
==0.0.
7
dm-haiku
==0.0.
9
dm-tree
==0.1.6
docker
==5.0.0
immutabledict
==2.0.0
jax
==0.3.
17
jax
==0.3.
25
ml-collections
==0.1.0
numpy
==1.21.6
pandas
==1.3.4
...
...
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