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ModelZoo
alphafold2_jax
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3d007e13
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3d007e13
authored
Jul 11, 2024
by
chenzk
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./scripts/download_all_data.sh 数据集下载目录
./scripts/download_all_data.sh 数据集下载目录
数据集快速下载中心:
[
SCNet AIDatasets
](
http://113.200.138.88:18080/aidatasets
)
,项目中数据集可从快速下载通道下载:
[
alphafold
](
http://113.200.138.88:18080/aidatasets/project-dependency/alphafold
)
。
## 推理
## 推理
分别提供了基于Jax的单体和多体的推理脚本.
分别提供了基于Jax的单体和多体的推理脚本.
```
bash
```
bash
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<div
style=
"display: flex; justify-content: center; align-items: center;"
>
<div
style=
"display: flex; justify-content: center; align-items: center;"
>
<img
src=
"./docs/result_pdb.png"
alt=
"Image"
>
<img
src=
"./docs/result_pdb.png"
alt=
"Image"
>
<div
style=
"position: absolute; top: 50%; left: 50%; transform: translate(-50%, -50%); background: rgba(0, 0, 0, 0.5); color: #fff; padding: 10px;"
>
<div
style=
"position: absolute; top: 50%; left: 50%; transform: translate(-50%, -50%); background: rgba(0, 0, 0, 0.5); color: #fff; padding: 10px;"
>
红色为真实结构,蓝色为预测结构
红色为真实结构,蓝色为预测结构
。
</div>
</div>
</div>
</div>
## 精度
##
#
精度
测试数据:
[
casp15
](
https://www.predictioncenter.org/casp15/targetlist.cgi
)
、
[
uniprot
](
https://www.uniprot.org/
)
,
测试数据:
[
casp15
](
https://www.predictioncenter.org/casp15/targetlist.cgi
)
、
[
uniprot
](
https://www.uniprot.org/
)
,
使用的加速卡:1张 Z100L-32G
使用的加速卡:1张 Z100L-32G
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## 应用场景
## 应用场景
### 算法类别
### 算法类别
NLP
蛋白质预测
### 热点应用行业
### 热点应用行业
医疗,科研,教育
医疗,科研,教育
## 预训练权重
预训练权重快速下载中心:
[
SCNet AIModels
](
http://113.200.138.88:18080/aimodels
)
,项目中的预训练权重可从快速下载通道下载:
[
alphafold
](
http://113.200.138.88:18080/aimodels/findsource-dependency/alphafold-params
)
。
## 源码仓库及问题反馈
## 源码仓库及问题反馈
*
[
https://developer.hpccube.com/codes/modelzoo/alphafold2_jax
](
https://developer.hpccube.com/codes/modelzoo/alphafold2_jax
)
*
[
https://developer.hpccube.com/codes/modelzoo/alphafold2_jax
](
https://developer.hpccube.com/codes/modelzoo/alphafold2_jax
)
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