remove duplicated code

2f0d89e7 · zhuwenwen · a1597f3f · a1597f3f · a1597f3f · a1597f3f
Commit 2f0d89e7 authored Aug 24, 2023 by zhuwenwen
20 changed files
--- a/alphafold/relax/relax.py
+++ b/alphafold/relax/relax.py
--- a/alphafold/relax/relax_test.py
+++ b/alphafold/relax/relax_test.py
--- a/alphafold/relax/testdata/model_output.pdb
+++ b/alphafold/relax/testdata/model_output.pdb
--- a/alphafold/relax/testdata/multiple_disulfides_target.pdb
+++ b/alphafold/relax/testdata/multiple_disulfides_target.pdb
--- a/alphafold/relax/testdata/with_violations.pdb
+++ b/alphafold/relax/testdata/with_violations.pdb
--- a/alphafold/relax/testdata/with_violations_casp14.pdb
+++ b/alphafold/relax/testdata/with_violations_casp14.pdb
--- a/alphafold/relax/utils.py
+++ b/alphafold/relax/utils.py
--- a/alphafold/relax/utils_test.py
+++ b/alphafold/relax/utils_test.py
--- a/docker/__init__.py
+++ b/docker/__init__.py
--- a/docker/jax_0.3.14_ROCM.patch
+++ b/docker/jax_0.3.14_ROCM.patch
--- a/docker/openmm.patch
+++ b/docker/openmm.patch
--- a/docker/openmm.patch.orig
+++ b/docker/openmm.patch.orig
--- a/docker/openmm.patch.rej
+++ b/docker/openmm.patch.rej
--- a/docker/run_patch.sh
+++ b/docker/run_patch.sh
-cd ../
-work_path="$PWD"
-a="$(which python)"
-cd "$(dirname "$(dirname "$a")")/lib/python3.8/site-packages" 
-patch -p0 < "$work_path/docker/openmm.patch"
-patch -p1 < "$work_path/docker/jax_0.3.14_ROCM.patch"
--- a/exp/run_docker.sh
+++ b/exp/run_docker.sh
--- a/exp/run_local.sh
+++ b/exp/run_local.sh
--- a/imgs/casp14_predictions.gif
+++ b/imgs/casp14_predictions.gif
--- a/imgs/header.jpg
+++ b/imgs/header.jpg
--- a/install_on_local.sh
+++ b/install_on_local.sh
--- a/notebooks/AlphaFold.ipynb
+++ b/notebooks/AlphaFold.ipynb