Bump Python in Colab to 3.9.

PiperOrigin-RevId: 515639889 Change-Id: If06429d31e0b82986436d747bf05ef95f8ec91fb

Bump Python in Colab to 3.9.
PiperOrigin-RevId: 515639889 Change-Id: If06429d31e0b82986436d747bf05ef95f8ec91fb
2e6a78f0 · Augustin Zidek · Copybara-Service · 651fe8cd · 2e6a78f0
Commit 2e6a78f0 authored Mar 10, 2023 by Augustin Zidek Committed by Copybara-Service Mar 10, 2023
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notebooks/AlphaFold.ipynb notebooks/AlphaFold.ipynb +5 -5

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--- a/notebooks/AlphaFold.ipynb
+++ b/notebooks/AlphaFold.ipynb
@@ -110,7 +110,7 @@
        "      %env PATH=/opt/conda/bin:{PATH}\n",
        "      %shell conda install -qy conda==4.13.0 \\\n",
        "          \u0026\u0026 conda install -qy -c conda-forge \\\n",
-        "            python=3.8 \\\n",
+        "            python=3.9 \\\n",
        "            openmm=7.5.1 \\\n",
        "            pdbfixer\n",
        "      pbar.update(80)\n",
@@ -161,15 +161,15 @@
        "      pbar.update(10)\n",
        "\n",
        "      # Apply OpenMM patch.\n",
-        "      %shell pushd /opt/conda/lib/python3.8/site-packages/ \u0026\u0026 \\\n",
+        "      %shell pushd /opt/conda/lib/python3.9/site-packages/ \u0026\u0026 \\\n",
        "          patch -p0 \u003c /content/alphafold/docker/openmm.patch \u0026\u0026 \\\n",
        "          popd\n",
        "\n",
        "      # Make sure stereo_chemical_props.txt is in all locations where it could be searched for.\n",
        "      %shell mkdir -p /content/alphafold/alphafold/common\n",
        "      %shell cp -f /content/stereo_chemical_props.txt /content/alphafold/alphafold/common\n",
-        "      %shell mkdir -p /opt/conda/lib/python3.8/site-packages/alphafold/common/\n",
-        "      %shell cp -f /content/stereo_chemical_props.txt /opt/conda/lib/python3.8/site-packages/alphafold/common/\n",
+        "      %shell mkdir -p /opt/conda/lib/python3.9/site-packages/alphafold/common/\n",
+        "      %shell cp -f /content/stereo_chemical_props.txt /opt/conda/lib/python3.9/site-packages/alphafold/common/\n",
        "\n",
        "      # Load parameters\n",
        "      %shell mkdir --parents \"{PARAMS_DIR}\"\n",
@@ -194,7 +194,7 @@
        "\n",
        "# Make sure everything we need is on the path.\n",
        "import sys\n",
-        "sys.path.append('/opt/conda/lib/python3.8/site-packages')\n",
+        "sys.path.append('/opt/conda/lib/python3.9/site-packages')\n",
        "sys.path.append('/content/alphafold')\n",
        "\n",
        "executed_cells.add(2)"