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Commit 2028cd0a authored by DeepMind's avatar DeepMind Committed by Copybara-Service
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Write out pdb70_hits.hhr alongside other MSA outputs. 

PiperOrigin-RevId: 386894639
Change-Id: I1ef2018a48398cf8201ac38fe129b004672ad22f
parent 20a70577
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alphafold/data/pipeline.py
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...@@ -148,6 +148,10 @@ class DataPipeline: ...@@ -148,6 +148,10 @@ class DataPipeline:
with open(mgnify_out_path, 'w') as f: with open(mgnify_out_path, 'w') as f:
f.write(jackhmmer_mgnify_result['sto']) f.write(jackhmmer_mgnify_result['sto'])
pdb70_out_path = os.path.join(msa_output_dir, 'pdb70_hits.hhr')
with open(pdb70_out_path, 'w') as f:
f.write(hhsearch_result)
uniref90_msa, uniref90_deletion_matrix, _ = parsers.parse_stockholm( uniref90_msa, uniref90_deletion_matrix, _ = parsers.parse_stockholm(
jackhmmer_uniref90_result['sto']) jackhmmer_uniref90_result['sto'])
mgnify_msa, mgnify_deletion_matrix, _ = parsers.parse_stockholm( mgnify_msa, mgnify_deletion_matrix, _ = parsers.parse_stockholm(
......
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