- 07 Oct, 2022 1 commit
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Ralf W. Grosse-Kunstleve authored
* Disable test triggering ASAN failure (to pin-point where the problem is). * Fix unsafe "block" implementation in test_eigen.cpp * Undo changes (i.e. revert back to master). * Detect "type_caster for Eigen::Ref made a copy." This is achieved without * reaching into internals, * making test_eigen.cpp depend on pybind11/numpy.h. * Add comment pointing to PR, for easy reference.
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- 24 Aug, 2022 1 commit
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Brad Messer authored
* Remove sanity check from code base. * Use main over master. * Better alternative that doesn't collide with language keywords/frequent usage words.
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- 29 Jun, 2022 1 commit
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Matthew Woehlke authored
When converting an array to an Eigen matrix, ignore the strides if any dimension size is 0. If the array is empty, the strides aren't relevant, and especially numpy ≥ 1.23 explicitly sets the strides to 0 in this case. (See numpy commit dd5ab7b11520.) Update tests to verify that this works, and continues to work.
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- 12 Feb, 2022 1 commit
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Henry Schreiner authored
* chore: drop Python 3.5 support * chore: more fstrings with flynt's help * ci: drop Python 3.5 * chore: bump dependency versions * docs: touch up py::args * tests: remove deprecation warning * Ban smartquotes * Very minor tweaks (by-product of reviewing PR #3719). Co-authored-by:
Aaron Gokaslan <skylion.aaron@gmail.com> Co-authored-by:
Ralf W. Grosse-Kunstleve <rwgk@google.com>
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- 11 Feb, 2022 1 commit
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Ralf W. Grosse-Kunstleve authored
* `#error BYE_BYE_GOLDEN_SNAKE` * Removing everything related to 2.7 from ci.yml * Commenting-out Centos7 * Removing `PYTHON: 27` from .appveyor.yml * "PY2" removal, mainly from tests. C++ code is not touched. * Systematic removal of `u` prefix from `u"..."` and `u'...'` literals. Collateral cleanup of a couple minor other things. * Cleaning up around case-insensitive hits for `[^a-z]py.*2` in tests/. * Removing obsolete Python 2 mention in compiling.rst * Proper `#error` for Python 2. * Using PY_VERSION_HEX to guard `#error "PYTHON 2 IS NO LONGER SUPPORTED.` * chore: bump pre-commit * style: run pre-commit for pyupgrade 3+ * tests: use sys.version_info, not PY * chore: more Python 2 removal * Uncommenting Centos7 block (PR #3691 showed that it is working again). * Update pre-commit hooks * Fix pre-commit hook * refactor: remove Python 2 from CMake * refactor: remove Python 2 from setup code * refactor: simplify, better static typing * feat: fail with nice messages * refactor: drop Python 2 C++ code * docs: cleanup for Python 3 * revert: intree revert: intree * docs: minor touchup to py2 statement Co-authored-by:
Henry Schreiner <henryschreineriii@gmail.com> Co-authored-by:
Aaron Gokaslan <skylion.aaron@gmail.com>
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- 13 Aug, 2021 1 commit
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Aaron Gokaslan authored
* Apply isort * Tweak isort config * Add env.py as a known_first_party * Add one missing known first party * Make config compat with older isort versions * Add another comment * Revert pyproject setting
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- 16 Oct, 2020 1 commit
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Henry Schreiner authored
* style: use Black everywhere * style: minor touchup from review
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- 16 Aug, 2020 1 commit
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Henry Schreiner authored
* tests: refactor and cleanup * refactor: more consistent * tests: vendor six * tests: more xfails, nicer system * tests: simplify to info * tests: suggestions from @YannickJadoul and @bstaletic * tests: restore some pypy tests that now pass * tests: rename info to env * tests: strict False/True * tests: drop explicit strict=True again * tests: reduce minimum PyTest to 3.1
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- 20 Jul, 2020 1 commit
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Henry Schreiner authored
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- 10 Jun, 2020 1 commit
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Sergei Izmailov authored
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- 06 Jul, 2019 1 commit
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Wenzel Jakob authored
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- 28 Aug, 2018 1 commit
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Wenzel Jakob authored
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- 11 Jan, 2018 1 commit
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Jason Rhinelander authored
- UPDATEIFCOPY is deprecated, replaced with similar (but not identical) WRITEBACKIFCOPY; trying to access the flag causes a deprecation warning under numpy 1.14, so just check the new flag there. - Numpy `repr` formatting of floats changed in 1.14.0 to `[1., 2., 3.]` instead of the pre-1.14 `[ 1., 2., 3.]`. Updated the tests to check for equality with the `repr(...)` value rather than the hard-coded (and now version-dependent) string representation.
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- 12 Oct, 2017 1 commit
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Jason Rhinelander authored
This fixes a bug introduced in b68959e8 when passing in a two-dimensional, but conformable, array as the value for a compile-time Eigen vector (such as VectorXd or RowVectorXd). The commit switched to using numpy to copy into the eigen data, but this broke the described case because numpy refuses to broadcast a (N,1) into a (N). This commit fixes it by squeezing the input array whenever the output array is 1-dimensional, which will let the problematic case through. (This shouldn't squeeze inappropriately as dimension compatibility is already checked for conformability before getting to the copy code).
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- 05 Aug, 2017 1 commit
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Jason Rhinelander authored
This udpates all the remaining tests to the new test suite code and comment styles started in #898. For the most part, the test coverage here is unchanged, with a few minor exceptions as noted below. - test_constants_and_functions: this adds more overload tests with overloads with different number of arguments for more comprehensive overload_cast testing. The test style conversion broke the overload tests under MSVC 2015, prompting the additional tests while looking for a workaround. - test_eigen: this dropped the unused functions `get_cm_corners` and `get_cm_corners_const`--these same tests were duplicates of the same things provided (and used) via ReturnTester methods. - test_opaque_types: this test had a hidden dependence on ExampleMandA which is now fixed by using the global UserType which suffices for the relevant test. - test_methods_and_attributes: this required some additions to UserType to make it usable as a replacement for the test's previous SimpleType: UserType gained a value mutator, and the `value` property is not mutable (it was previously readonly). Some overload tests were also added to better test overload_cast (as described above). - test_numpy_array: removed the untemplated mutate_data/mutate_data_t: the templated versions with an empty parameter pack expand to the same thing. - test_stl: this was already mostly in the new style; this just tweaks things a bit, localizing a class, and adding some missing `// test_whatever` comments. - test_virtual_functions: like `test_stl`, this was mostly in the new test style already, but needed some `// test_whatever` comments. This commit also moves the inherited virtual example code to the end of the file, after the main set of tests (since it is less important than the other tests, and rather length); it also got renamed to `test_inherited_virtuals` (from `test_inheriting_repeat`) because it tests both inherited virtual approaches, not just the repeat approach.
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- 29 Jun, 2017 1 commit
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Dean Moldovan authored
Put the caster's temporary array on life support to ensure correct lifetime when it's being used as a subcaster.
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- 11 May, 2017 1 commit
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Dean Moldovan authored
Missing conformability check was causing Eigen to create a 0x0 matrix with an error in debug mode and silent corruption in release mode.
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- 07 May, 2017 2 commits
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Cris Luengo authored
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Cris Luengo authored
`EigenConformable::stride_compatible` returns false if the strides are negative. In this case, do not use `EigenConformable::stride`, as it is {0,0}. We cannot write negative strides in this element, as Eigen will throw an assertion if we do. The `type_caster` specialization for regular, dense Eigen matrices now does a second `array_t::ensure` to copy data in case of negative strides. I'm not sure that this is the best way to implement this. I have added "TODO" tags linking these changes to Eigen bug #747, which, when fixed, will allow Eigen to accept negative strides.
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- 09 Apr, 2017 1 commit
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Jason Rhinelander authored
Many of the Eigen type casters' name() methods weren't wrapping the type description in a `type_descr` object, which thus wasn't adding the "{...}" annotation used to identify an argument which broke the help output by skipping eigen arguments. The test code I had added even had some (unnoticed) broken output (with the "arg0: " showing up in the return value). This commit also adds test code to ensure that named eigen arguments actually work properly, despite the invalid help output. (The added tests pass without the rest of this commit).
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- 22 Mar, 2017 1 commit
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Dean Moldovan authored
Fixes #754.
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- 17 Mar, 2017 1 commit
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Jason Rhinelander authored
Fixes #738 The current check for conformability fails when given a 2D, 1xN or Nx1 input to a row-major or column-major, respectively, Eigen::Ref, leading to a copy-required state in the type_caster, but this later failed because the copy was also non-conformable because it had the same shape and strides (because a 1xN or Nx1 is both F and C contiguous). In such cases we can safely ignore the stride on the "1" dimension since it'll never be used: only the "N" dimension stride needs to match the Eigen::Ref stride, which both fixes the non-conformable copy problem, but also avoids a copy entirely as long as the "N" dimension has a compatible stride.
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- 28 Feb, 2017 1 commit
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Dean Moldovan authored
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- 24 Feb, 2017 3 commits
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Jason Rhinelander authored
test_eigen.py and test_numpy_*.py have the same @pytest.requires_eigen_and_numpy or @pytest.requires_numpy on every single test; this changes them to use pytest's global `pytestmark = ...` instead to disable the entire module when numpy and/or eigen aren't available.
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Jason Rhinelander authored
This commit largely rewrites the Eigen dense matrix support to avoid copying in many cases: Eigen arguments can now reference numpy data, and numpy objects can now reference Eigen data (given compatible types). Eigen::Ref<...> arguments now also make use of the new `convert` argument use (added in PR #634) to avoid conversion, allowing `py::arg().noconvert()` to be used when binding a function to prohibit copying when invoking the function. Respecting `convert` also means Eigen overloads that avoid copying will be preferred during overload resolution to ones that require copying. This commit also rewrites the Eigen documentation and test suite to explain and test the new capabilities.
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Jason Rhinelander authored
Currently when we do a conversion between a numpy array and an Eigen Vector, we allow the conversion only if the Eigen type is a compile-time vector (i.e. at least one dimension is fixed at 1 at compile time), or if the type is dynamic on *both* dimensions. This means we can run into cases where MatrixXd allow things that conforming, compile-time sizes does not: for example, `Matrix<double,4,Dynamic>` is currently not allowed, even when assigning from a 4-element vector, but it *is* allowed for a `Matrix<double,Dynamic,Dynamic>`. This commit also reverts the current behaviour of using the matrix's storage order to determine the structure when the Matrix is fully dynamic (i.e. in both dimensions). Currently we assign to an eigen row if the storage order is row-major, and column otherwise: this seems wrong (the storage order has nothing to do with the shape!). While numpy doesn't distinguish between a row/column vector, Eigen does, but it makes more sense to consistently choose one than to produce something with a different shape based on the intended storage layout.
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- 12 Dec, 2016 1 commit
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Dean Moldovan authored
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- 25 Aug, 2016 1 commit
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Dean Moldovan authored
Fixes #357.
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- 19 Aug, 2016 1 commit
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Dean Moldovan authored
Use simple asserts and pytest's powerful introspection to make testing simpler. This merges the old .py/.ref file pairs into simple .py files where the expected values are right next to the code being tested. This commit does not touch the C++ part of the code and replicates the Python tests exactly like the old .ref-file-based approach.
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