GitLab

* add ruff and isort. remove black and flake8

* remove unnecessary dependencies

* remove dependency from table

* change order

* ran ruff

* check 3.9

* exclude evaluator

* update CI workflow

* use ruff config in pyproject.toml

* test

* add isort rules to ruff

* sort imports

* import `make_table`

* try stages for no-commit-to-branch

* turn on mypy for pre-commit

* test

* test

* test

* change no-commit-to-branch to default

* nits

* fixed dependency

* doc_to_decontamination_query can use function

* add option for doc_to_decontamination_query to follow doc_to_text

* added documentation for doc_to_decontamination_query

* adjust description

* format

* Additional process for doc_to_choice

* doc_to_choice can also parse a string