Set versions of libraries AlphaFold Colab notebook depends on.

PiperOrigin-RevId: 390553964 Change-Id: Ia5bc6e12ab3f1a7827b7d914c93f6990a1139780

Set versions of libraries AlphaFold Colab notebook depends on.
PiperOrigin-RevId: 390553964 Change-Id: Ia5bc6e12ab3f1a7827b7d914c93f6990a1139780
f65e94fc · Augustin Zidek · Copybara-Service · 05db248e · f65e94fc
Commit f65e94fc authored Aug 13, 2021 by Augustin Zidek Committed by Copybara-Service Aug 13, 2021
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notebooks/AlphaFold.ipynb notebooks/AlphaFold.ipynb +4 -1

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--- a/notebooks/AlphaFold.ipynb
+++ b/notebooks/AlphaFold.ipynb
@@ -125,7 +125,10 @@
    "      %shell rm -rf alphafold\n",
    "      %shell git clone {GIT_REPO} alphafold\n",
    "      pbar.update(8)\n",
-    "      %shell pip3 install ./alphafold\n",
+    "      # Install the required versions of all dependencies.\n",
+    "      %shell pip3 install -r ./alphafold/requirements.txt\n",
+    "      # Run setup.py to install only AlphaFold.\n",
+    "      %shell pip3 install --no-dependencies ./alphafold\n",
    "      pbar.update(10)\n",
    "\n",
    "      # Apply OpenMM patch.\n",