Update multimer models to v2.

PiperOrigin-RevId: 432150462
Change-Id: I508371123adf9dad20f4fe1082c7a6c7cd6815d4

README.md

@@ -149,7 +149,7 @@ parameters are made available under the terms of the CC BY 4.0 license. Please
 see the [Disclaimer](#license-and-disclaimer) below for more detail.
 
 The AlphaFold parameters are available from
-https://storage.googleapis.com/alphafold/alphafold_params_2022-01-19.tar, and
+https://storage.googleapis.com/alphafold/alphafold_params_2022-03-02.tar, and
 are downloaded as part of the `scripts/download_all_data.sh` script. This script
 will download parameters for:
 

alphafold/model/config.py

@@ -52,11 +52,11 @@ MODEL_PRESETS = {
         'model_5_ptm',
     ),
     'multimer': (
-        'model_1_multimer',
-        'model_2_multimer',
-        'model_3_multimer',
-        'model_4_multimer',
-        'model_5_multimer',
+        'model_1_multimer_v2',
+        'model_2_multimer_v2',
+        'model_3_multimer_v2',
+        'model_4_multimer_v2',
+        'model_5_multimer_v2',
     ),
 }
 MODEL_PRESETS['monomer_casp14'] = MODEL_PRESETS['monomer']

notebooks/AlphaFold.ipynb

@@ -132,7 +132,7 @@
         "\n",
         "GIT_REPO = 'https://github.com/deepmind/alphafold'\n",
         "\n",
-        "SOURCE_URL = 'https://storage.googleapis.com/alphafold/alphafold_params_colab_2022-01-19.tar'\n",
+        "SOURCE_URL = 'https://storage.googleapis.com/alphafold/alphafold_params_colab_2022-03-02.tar'\n",
         "PARAMS_DIR = './alphafold/data/params'\n",
         "PARAMS_PATH = os.path.join(PARAMS_DIR, os.path.basename(SOURCE_URL))\n",
         "\n",

scripts/download_alphafold_params.sh

@@ -31,7 +31,7 @@ fi
 
 DOWNLOAD_DIR="$1"
 ROOT_DIR="${DOWNLOAD_DIR}/params"
-SOURCE_URL="https://storage.googleapis.com/alphafold/alphafold_params_2022-01-19.tar"
+SOURCE_URL="https://storage.googleapis.com/alphafold/alphafold_params_2022-03-02.tar"
 BASENAME=$(basename "${SOURCE_URL}")
 
 mkdir --parents "${ROOT_DIR}"